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Mutant Information

Mutant Name	FN2583-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2583-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 78

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3893032 G-A Hetero INTERGENIC
SBS Chr1 4898458 C-T Hetero INTERGENIC
SBS Chr1 6706174 C-G Hetero INTERGENIC
SBS Chr1 9599477 G-A Hetero INTERGENIC
SBS Chr1 17700413 C-A Hetero INTERGENIC
SBS Chr1 25194353 A-C Hetero INTERGENIC
SBS Chr1 27765773 C-A Hetero INTERGENIC
SBS Chr2 5053662 A-T Homo INTERGENIC
SBS Chr2 5801017 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g080100
SBS Chr2 7040146 C-T Hetero INTERGENIC
SBS Chr2 9031003 C-T Hetero INTERGENIC
SBS Chr2 9510366 G-A Homo INTERGENIC
SBS Chr2 14890355 C-T Hetero INTERGENIC
SBS Chr2 15322658 C-G Hetero INTERGENIC
SBS Chr2 19801543 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 30140401 C-T Hetero INTERGENIC
SBS Chr2 32353611 G-T Hetero INTRON
SBS Chr2 35438047 G-A Hetero INTERGENIC
SBS Chr3 5970455 G-A Hetero INTERGENIC
SBS Chr3 18211225 A-T Hetero INTERGENIC
SBS Chr3 20345063 C-T Hetero INTERGENIC
SBS Chr3 28582556 T-A Hetero INTRON
SBS Chr3 29037242 C-T Hetero INTERGENIC
SBS Chr3 33842016 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g364700
SBS Chr3 35767499 G-T Hetero INTERGENIC
SBS Chr4 3827678 G-C Hetero INTERGENIC
SBS Chr4 8495933 T-C Hetero INTERGENIC
SBS Chr4 9646404 G-A Hetero INTERGENIC
SBS Chr4 13537956 T-A Hetero INTERGENIC
SBS Chr4 29445979 G-A Hetero INTERGENIC
SBS Chr4 30795998 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g238000
SBS Chr4 31279759 G-A Hetero INTRON
SBS Chr4 34116759 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g284909
SBS Chr5 2412326 G-C Hetero INTERGENIC
SBS Chr5 4230623 G-T Hetero INTERGENIC
SBS Chr5 7045369 C-T Hetero INTERGENIC
SBS Chr5 11218448 C-T Hetero INTERGENIC
SBS Chr5 27695271 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g253000
SBS Chr5 30178872 C-G Hetero INTERGENIC
SBS Chr6 8932060 G-T Hetero INTERGENIC
SBS Chr6 11278030 C-T Hetero INTERGENIC
SBS Chr6 11873587 C-A Hetero INTERGENIC
SBS Chr6 14863158 G-T Hetero INTERGENIC
SBS Chr6 17790813 C-T Hetero INTERGENIC
SBS Chr6 21533216 C-T Hetero INTERGENIC
SBS Chr6 24693332 A-G Hetero INTERGENIC
SBS Chr6 25780994 C-A Hetero INTERGENIC
SBS Chr6 25780995 G-A Hetero INTERGENIC
SBS Chr6 28462386 C-T Hetero INTERGENIC
SBS Chr7 6958196 G-C Hetero INTERGENIC
SBS Chr7 12483418 C-T Hetero INTERGENIC
SBS Chr7 13586121 G-T Hetero INTERGENIC
SBS Chr7 20384289 C-T Hetero INTERGENIC
SBS Chr7 25233793 C-T Hetero INTERGENIC
SBS Chr8 610952 T-C Hetero INTERGENIC
SBS Chr8 7997723 A-T Hetero INTERGENIC
SBS Chr8 8227750 C-T Hetero INTERGENIC
SBS Chr8 16425229 T-A Hetero INTERGENIC
SBS Chr8 20142706 A-T Hetero SYNONYMOUS_CODING
SBS Chr8 22860460 T-G Hetero INTERGENIC
SBS Chr9 3432598 G-C Hetero INTERGENIC
SBS Chr9 4922151 C-T Homo INTRON
SBS Chr9 8046541 T-C Hetero INTERGENIC
SBS Chr9 17611860 A-G Hetero INTRON
SBS Chr9 18716411 G-A Hetero INTERGENIC
SBS Chr10 3390499 G-A Hetero INTERGENIC
SBS Chr10 4978710 T-C Hetero INTERGENIC
SBS Chr10 9306457 C-T Hetero INTERGENIC
SBS Chr10 13231084 G-T Hetero INTERGENIC
SBS Chr10 17103426 G-T Hetero INTRON
SBS Chr10 22023800 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g178300
SBS Chr11 9099510 C-G Hetero INTERGENIC
SBS Chr11 29064569 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g238100
SBS Chr12 364208 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g004200
SBS Chr12 1421826 A-G Hetero SYNONYMOUS_CODING
SBS Chr12 8193872 C-T Hetero INTERGENIC
SBS Chr12 8193874 A-G Hetero INTERGENIC
SBS Chr12 23217018 C-A Hetero INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 350844 350865 21
Deletion Chr3 2702422 2702432 10
Deletion Chr7 2768573 2768575 2
Deletion Chr8 6140761 6140772 11
Deletion Chr8 6308487 6308498 11 OsKitaake08g067800
Deletion Chr7 6399051 6399058 7
Deletion Chr8 9227330 9227332 2
Deletion Chr1 10029559 10029568 9
Deletion Chr2 10095314 10095315 1
Deletion Chr1 10438180 10438196 16
Deletion Chr5 12104821 12104822 1
Deletion Chr8 13887544 13887550 6
Deletion Chr11 17598106 17598108 2
Deletion Chr1 18014635 18014720 85
Deletion Chr2 19932690 19932695 5
Deletion Chr12 22101895 22101897 2
Deletion Chr3 22741023 22741025 2
Deletion Chr4 22965550 22965551 1
Deletion Chr6 23262846 23262858 12 OsKitaake06g204900
Deletion Chr5 24849540 24849553 13
Deletion Chr11 25728912 25728918 6
Deletion Chr6 28861996 28862004 8
Deletion Chr6 29208251 29208257 6
Deletion Chr4 29622001 29660000 37999 4
Deletion Chr2 30942323 30942324 1
Deletion Chr4 34562264 34562267 3
Deletion Chr2 35099490 35099508 18

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31155236 31155239 2
Insertion Chr2 25209038 25209041 2
Insertion Chr4 23268866 23268872 5
Insertion Chr6 26810422 26810425 2
Insertion Chr7 734216 734219 2
Insertion Chr10 23399614 23399617 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 5842842 5938150
Inversion Chr2 5842850 5938160

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3893032	G-A	Hetero	INTERGENIC
SBS	Chr1	4898458	C-T	Hetero	INTERGENIC
SBS	Chr1	6706174	C-G	Hetero	INTERGENIC
SBS	Chr1	9599477	G-A	Hetero	INTERGENIC
SBS	Chr1	17700413	C-A	Hetero	INTERGENIC
SBS	Chr1	25194353	A-C	Hetero	INTERGENIC
SBS	Chr1	27765773	C-A	Hetero	INTERGENIC
SBS	Chr2	5053662	A-T	Homo	INTERGENIC
SBS	Chr2	5801017	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g080100
SBS	Chr2	7040146	C-T	Hetero	INTERGENIC
SBS	Chr2	9031003	C-T	Hetero	INTERGENIC
SBS	Chr2	9510366	G-A	Homo	INTERGENIC
SBS	Chr2	14890355	C-T	Hetero	INTERGENIC
SBS	Chr2	15322658	C-G	Hetero	INTERGENIC
SBS	Chr2	19801543	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	30140401	C-T	Hetero	INTERGENIC
SBS	Chr2	32353611	G-T	Hetero	INTRON
SBS	Chr2	35438047	G-A	Hetero	INTERGENIC
SBS	Chr3	5970455	G-A	Hetero	INTERGENIC
SBS	Chr3	18211225	A-T	Hetero	INTERGENIC
SBS	Chr3	20345063	C-T	Hetero	INTERGENIC
SBS	Chr3	28582556	T-A	Hetero	INTRON
SBS	Chr3	29037242	C-T	Hetero	INTERGENIC
SBS	Chr3	33842016	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g364700
SBS	Chr3	35767499	G-T	Hetero	INTERGENIC
SBS	Chr4	3827678	G-C	Hetero	INTERGENIC
SBS	Chr4	8495933	T-C	Hetero	INTERGENIC
SBS	Chr4	9646404	G-A	Hetero	INTERGENIC
SBS	Chr4	13537956	T-A	Hetero	INTERGENIC
SBS	Chr4	29445979	G-A	Hetero	INTERGENIC
SBS	Chr4	30795998	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g238000
SBS	Chr4	31279759	G-A	Hetero	INTRON
SBS	Chr4	34116759	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g284909
SBS	Chr5	2412326	G-C	Hetero	INTERGENIC
SBS	Chr5	4230623	G-T	Hetero	INTERGENIC
SBS	Chr5	7045369	C-T	Hetero	INTERGENIC
SBS	Chr5	11218448	C-T	Hetero	INTERGENIC
SBS	Chr5	27695271	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g253000
SBS	Chr5	30178872	C-G	Hetero	INTERGENIC
SBS	Chr6	8932060	G-T	Hetero	INTERGENIC
SBS	Chr6	11278030	C-T	Hetero	INTERGENIC
SBS	Chr6	11873587	C-A	Hetero	INTERGENIC
SBS	Chr6	14863158	G-T	Hetero	INTERGENIC
SBS	Chr6	17790813	C-T	Hetero	INTERGENIC
SBS	Chr6	21533216	C-T	Hetero	INTERGENIC
SBS	Chr6	24693332	A-G	Hetero	INTERGENIC
SBS	Chr6	25780994	C-A	Hetero	INTERGENIC
SBS	Chr6	25780995	G-A	Hetero	INTERGENIC
SBS	Chr6	28462386	C-T	Hetero	INTERGENIC
SBS	Chr7	6958196	G-C	Hetero	INTERGENIC
SBS	Chr7	12483418	C-T	Hetero	INTERGENIC
SBS	Chr7	13586121	G-T	Hetero	INTERGENIC
SBS	Chr7	20384289	C-T	Hetero	INTERGENIC
SBS	Chr7	25233793	C-T	Hetero	INTERGENIC
SBS	Chr8	610952	T-C	Hetero	INTERGENIC
SBS	Chr8	7997723	A-T	Hetero	INTERGENIC
SBS	Chr8	8227750	C-T	Hetero	INTERGENIC
SBS	Chr8	16425229	T-A	Hetero	INTERGENIC
SBS	Chr8	20142706	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	22860460	T-G	Hetero	INTERGENIC
SBS	Chr9	3432598	G-C	Hetero	INTERGENIC
SBS	Chr9	4922151	C-T	Homo	INTRON
SBS	Chr9	8046541	T-C	Hetero	INTERGENIC
SBS	Chr9	17611860	A-G	Hetero	INTRON
SBS	Chr9	18716411	G-A	Hetero	INTERGENIC
SBS	Chr10	3390499	G-A	Hetero	INTERGENIC
SBS	Chr10	4978710	T-C	Hetero	INTERGENIC
SBS	Chr10	9306457	C-T	Hetero	INTERGENIC
SBS	Chr10	13231084	G-T	Hetero	INTERGENIC
SBS	Chr10	17103426	G-T	Hetero	INTRON
SBS	Chr10	22023800	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g178300
SBS	Chr11	9099510	C-G	Hetero	INTERGENIC
SBS	Chr11	29064569	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g238100
SBS	Chr12	364208	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g004200
SBS	Chr12	1421826	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	8193872	C-T	Hetero	INTERGENIC
SBS	Chr12	8193874	A-G	Hetero	INTERGENIC
SBS	Chr12	23217018	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	350844	350865	21
Deletion	Chr3	2702422	2702432	10
Deletion	Chr7	2768573	2768575	2
Deletion	Chr8	6140761	6140772	11
Deletion	Chr8	6308487	6308498	11	OsKitaake08g067800
Deletion	Chr7	6399051	6399058	7
Deletion	Chr8	9227330	9227332	2
Deletion	Chr1	10029559	10029568	9
Deletion	Chr2	10095314	10095315	1
Deletion	Chr1	10438180	10438196	16
Deletion	Chr5	12104821	12104822	1
Deletion	Chr8	13887544	13887550	6
Deletion	Chr11	17598106	17598108	2
Deletion	Chr1	18014635	18014720	85
Deletion	Chr2	19932690	19932695	5
Deletion	Chr12	22101895	22101897	2
Deletion	Chr3	22741023	22741025	2
Deletion	Chr4	22965550	22965551	1
Deletion	Chr6	23262846	23262858	12	OsKitaake06g204900
Deletion	Chr5	24849540	24849553	13
Deletion	Chr11	25728912	25728918	6
Deletion	Chr6	28861996	28862004	8
Deletion	Chr6	29208251	29208257	6
Deletion	Chr4	29622001	29660000	37999	4
Deletion	Chr2	30942323	30942324	1
Deletion	Chr4	34562264	34562267	3
Deletion	Chr2	35099490	35099508	18

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5842842	5938150
Inversion	Chr2	5842850	5938160

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes