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Mutant Information

Mutant Name	FN2584-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2584-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7657986 C-T Hetero INTERGENIC
SBS Chr1 18839586 G-A Homo INTERGENIC
SBS Chr1 25504409 G-A Homo INTERGENIC
SBS Chr1 29445896 T-A Homo INTERGENIC
SBS Chr1 33631933 G-A Homo INTERGENIC
SBS Chr2 6604206 G-T Hetero INTRON
SBS Chr2 7650438 C-T Hetero INTERGENIC
SBS Chr2 20735863 A-G Hetero INTERGENIC
SBS Chr2 20948339 T-G Hetero INTERGENIC
SBS Chr2 25076024 G-T Hetero INTERGENIC
SBS Chr2 25412327 C-T Hetero INTERGENIC
SBS Chr2 30954498 T-G Hetero INTRON
SBS Chr2 31638104 G-T Hetero INTERGENIC
SBS Chr2 34048651 C-T Homo INTERGENIC
SBS Chr3 928233 G-A Hetero INTERGENIC
SBS Chr3 19223374 A-G Homo INTERGENIC
SBS Chr4 5903984 C-A Hetero INTRON
SBS Chr4 16230543 G-T Hetero INTERGENIC
SBS Chr4 20425088 C-T Homo INTERGENIC
SBS Chr4 29320973 A-G Hetero INTERGENIC
SBS Chr4 34154444 G-A Hetero INTERGENIC
SBS Chr4 34325928 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g285000
SBS Chr5 8332325 A-C Hetero INTERGENIC
SBS Chr5 19724812 C-T Hetero INTRON
SBS Chr6 9926768 T-A Hetero INTERGENIC
SBS Chr7 3891094 A-G Hetero INTERGENIC
SBS Chr7 4100131 A-G Hetero UTR_5_PRIME
SBS Chr7 13163766 C-A Hetero INTERGENIC
SBS Chr7 15585016 G-T Hetero INTERGENIC
SBS Chr8 7917407 G-A Hetero INTERGENIC
SBS Chr8 9945597 G-A Hetero INTERGENIC
SBS Chr8 11451868 G-A Hetero INTERGENIC
SBS Chr8 15587289 G-A Hetero INTERGENIC
SBS Chr8 15587291 C-A Hetero INTERGENIC
SBS Chr8 23696873 C-T Hetero INTERGENIC
SBS Chr8 27251132 A-G Hetero INTERGENIC
SBS Chr9 5196082 G-A Hetero INTERGENIC
SBS Chr9 6563907 A-G Hetero INTERGENIC
SBS Chr9 10157985 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g062300
SBS Chr9 11805771 G-A Hetero INTRON
SBS Chr9 12334992 A-G Hetero INTERGENIC
SBS Chr9 18072598 G-T Hetero INTERGENIC
SBS Chr10 17654891 C-T Hetero INTERGENIC
SBS Chr10 19362024 A-G Hetero INTERGENIC
SBS Chr11 10746311 G-A Hetero INTERGENIC
SBS Chr11 20008920 C-A Hetero INTERGENIC
SBS Chr11 25248334 C-T Hetero INTERGENIC
SBS Chr11 26152743 G-A Homo INTERGENIC
SBS Chr11 26152744 C-T Homo INTERGENIC
SBS Chr12 202650 C-T Hetero INTERGENIC
SBS Chr12 9583127 G-T Hetero INTERGENIC
SBS Chr12 19618793 G-A Homo INTERGENIC
SBS Chr12 23959449 T-A Homo INTERGENIC
SBS Chr12 27009280 T-G Homo NON_SYNONYMOUS_CODING OsKitaake12g226600

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2698343 2698344 1
Deletion Chr9 4670717 4670718 1
Deletion Chr5 6612048 6612051 3
Deletion Chr3 11475813 11475821 8
Deletion Chr1 14251057 14251076 19
Deletion Chr5 14825325 14825339 14
Deletion Chr3 15996493 15996496 3
Deletion Chr11 16748135 16748143 8
Deletion Chr10 16984036 16984038 2
Deletion Chr2 23344036 23344046 10
Deletion Chr5 27376096 27376107 11
Deletion Chr1 28516512 28516534 22
Deletion Chr2 36165713 36165721 8
Deletion Chr1 40343711 40343712 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 29401543 29401547 3
Insertion Chr7 8258402 8258404 1
Insertion Chr8 3245576 3245579 2
Insertion Chr8 14788066 14788070 3
Insertion Chr12 19618778 19618785 6

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 17144317 17144948 OsKitaake10g117200
Inversion Chr10 17144325 17144951 OsKitaake10g117200

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 23939288 Chr3 26675563

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7657986	C-T	Hetero	INTERGENIC
SBS	Chr1	18839586	G-A	Homo	INTERGENIC
SBS	Chr1	25504409	G-A	Homo	INTERGENIC
SBS	Chr1	29445896	T-A	Homo	INTERGENIC
SBS	Chr1	33631933	G-A	Homo	INTERGENIC
SBS	Chr2	6604206	G-T	Hetero	INTRON
SBS	Chr2	7650438	C-T	Hetero	INTERGENIC
SBS	Chr2	20735863	A-G	Hetero	INTERGENIC
SBS	Chr2	20948339	T-G	Hetero	INTERGENIC
SBS	Chr2	25076024	G-T	Hetero	INTERGENIC
SBS	Chr2	25412327	C-T	Hetero	INTERGENIC
SBS	Chr2	30954498	T-G	Hetero	INTRON
SBS	Chr2	31638104	G-T	Hetero	INTERGENIC
SBS	Chr2	34048651	C-T	Homo	INTERGENIC
SBS	Chr3	928233	G-A	Hetero	INTERGENIC
SBS	Chr3	19223374	A-G	Homo	INTERGENIC
SBS	Chr4	5903984	C-A	Hetero	INTRON
SBS	Chr4	16230543	G-T	Hetero	INTERGENIC
SBS	Chr4	20425088	C-T	Homo	INTERGENIC
SBS	Chr4	29320973	A-G	Hetero	INTERGENIC
SBS	Chr4	34154444	G-A	Hetero	INTERGENIC
SBS	Chr4	34325928	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g285000
SBS	Chr5	8332325	A-C	Hetero	INTERGENIC
SBS	Chr5	19724812	C-T	Hetero	INTRON
SBS	Chr6	9926768	T-A	Hetero	INTERGENIC
SBS	Chr7	3891094	A-G	Hetero	INTERGENIC
SBS	Chr7	4100131	A-G	Hetero	UTR_5_PRIME
SBS	Chr7	13163766	C-A	Hetero	INTERGENIC
SBS	Chr7	15585016	G-T	Hetero	INTERGENIC
SBS	Chr8	7917407	G-A	Hetero	INTERGENIC
SBS	Chr8	9945597	G-A	Hetero	INTERGENIC
SBS	Chr8	11451868	G-A	Hetero	INTERGENIC
SBS	Chr8	15587289	G-A	Hetero	INTERGENIC
SBS	Chr8	15587291	C-A	Hetero	INTERGENIC
SBS	Chr8	23696873	C-T	Hetero	INTERGENIC
SBS	Chr8	27251132	A-G	Hetero	INTERGENIC
SBS	Chr9	5196082	G-A	Hetero	INTERGENIC
SBS	Chr9	6563907	A-G	Hetero	INTERGENIC
SBS	Chr9	10157985	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g062300
SBS	Chr9	11805771	G-A	Hetero	INTRON
SBS	Chr9	12334992	A-G	Hetero	INTERGENIC
SBS	Chr9	18072598	G-T	Hetero	INTERGENIC
SBS	Chr10	17654891	C-T	Hetero	INTERGENIC
SBS	Chr10	19362024	A-G	Hetero	INTERGENIC
SBS	Chr11	10746311	G-A	Hetero	INTERGENIC
SBS	Chr11	20008920	C-A	Hetero	INTERGENIC
SBS	Chr11	25248334	C-T	Hetero	INTERGENIC
SBS	Chr11	26152743	G-A	Homo	INTERGENIC
SBS	Chr11	26152744	C-T	Homo	INTERGENIC
SBS	Chr12	202650	C-T	Hetero	INTERGENIC
SBS	Chr12	9583127	G-T	Hetero	INTERGENIC
SBS	Chr12	19618793	G-A	Homo	INTERGENIC
SBS	Chr12	23959449	T-A	Homo	INTERGENIC
SBS	Chr12	27009280	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g226600

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2698343	2698344	1
Deletion	Chr9	4670717	4670718	1
Deletion	Chr5	6612048	6612051	3
Deletion	Chr3	11475813	11475821	8
Deletion	Chr1	14251057	14251076	19
Deletion	Chr5	14825325	14825339	14
Deletion	Chr3	15996493	15996496	3
Deletion	Chr11	16748135	16748143	8
Deletion	Chr10	16984036	16984038	2
Deletion	Chr2	23344036	23344046	10
Deletion	Chr5	27376096	27376107	11
Deletion	Chr1	28516512	28516534	22
Deletion	Chr2	36165713	36165721	8
Deletion	Chr1	40343711	40343712	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	17144317	17144948	OsKitaake10g117200
Inversion	Chr10	17144325	17144951	OsKitaake10g117200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes