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Mutant Information

Mutant Name	FN2587-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2587-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7316129 C-T Hetero INTERGENIC
SBS Chr1 38191839 G-A Hetero INTERGENIC
SBS Chr1 41979278 G-A Hetero INTERGENIC
SBS Chr2 4905428 T-A Hetero INTERGENIC
SBS Chr2 7096883 T-A Hetero INTRON
SBS Chr2 7831183 A-C Hetero INTERGENIC
SBS Chr2 8182920 A-G Hetero INTERGENIC
SBS Chr2 27427868 A-G Hetero INTERGENIC
SBS Chr5 6185400 A-T Hetero INTERGENIC
SBS Chr5 13487320 A-G Hetero INTERGENIC
SBS Chr5 17228393 T-A Hetero INTERGENIC
SBS Chr5 19277149 A-C Homo INTERGENIC
SBS Chr5 19277151 G-A Homo INTERGENIC
SBS Chr5 20679626 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g165100
SBS Chr6 643221 G-A Hetero INTERGENIC
SBS Chr6 4701524 G-A Homo INTERGENIC
SBS Chr6 4701527 C-T Homo INTERGENIC
SBS Chr6 9058951 C-A Hetero INTERGENIC
SBS Chr6 12596446 A-G Homo INTERGENIC
SBS Chr6 21008340 C-T Hetero INTRON
SBS Chr6 29751689 C-A Homo NON_SYNONYMOUS_CODING OsKitaake06g277900
SBS Chr6 29768010 C-A Homo INTERGENIC
SBS Chr6 29768026 G-A Homo INTERGENIC
SBS Chr7 2732373 C-T Hetero INTERGENIC
SBS Chr8 3122 G-A Hetero INTERGENIC
SBS Chr8 13959480 G-A Homo INTRON
SBS Chr8 14239295 G-C Homo INTERGENIC
SBS Chr8 15757408 G-A Hetero INTERGENIC
SBS Chr8 17815754 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g132900
SBS Chr9 4837768 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g027400
SBS Chr9 8505398 G-A Homo INTERGENIC
SBS Chr9 17244580 T-A Homo NON_SYNONYMOUS_CODING OsKitaake09g129500
SBS Chr9 19663541 A-C Homo UTR_3_PRIME
SBS Chr10 21928517 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g177000
SBS Chr11 12489586 C-T Hetero INTERGENIC
SBS Chr11 18493756 G-A Hetero INTERGENIC
SBS Chr11 18493757 C-A Hetero INTERGENIC
SBS Chr11 21226426 C-T Hetero INTERGENIC
SBS Chr12 12488210 G-A Homo INTERGENIC
SBS Chr12 21109846 T-A Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 207920 207921 1
Deletion Chr6 870350 870358 8
Deletion Chr11 7255427 7255429 2
Deletion Chr6 8466528 8466531 3
Deletion Chr3 10264083 10264087 4
Deletion Chr6 11114668 11114683 15
Deletion Chr5 11812001 11873000 60999 OsKitaake05g096700
Deletion Chr5 11879001 12092000 212999 8
Deletion Chr5 12095001 12156000 60999 OsKitaake05g097700
Deletion Chr7 12143722 12143723 1
Deletion Chr11 15966702 15966707 5
Deletion Chr3 17465090 17465092 2
Deletion Chr12 18663876 18663880 4
Deletion Chr12 19796357 19796363 6
Deletion Chr11 21091405 21091410 5
Deletion Chr5 26253792 26253796 4
Deletion Chr3 29004593 29004602 9
Deletion Chr4 29116172 29116173 1
Deletion Chr1 34310950 34310953 3
Deletion Chr4 35391855 35391861 6
Deletion Chr4 35961822 35961823 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38569391 38569395 3
Insertion Chr8 15510287 15510290 2
Insertion Chr12 4326395 4326402 6

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 8081030 8167238
Inversion Chr2 8081035 8167248
Inversion Chr3 11537402 11745606
Inversion Chr3 11537414 11745614
Inversion Chr11 19036320 19187312
Inversion Chr11 19036326 19192329

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 2314755 Chr1 41253620 OsKitaake01g450600
Translocation Chr7 2314761 Chr1 41256362 OsKitaake01g450700
Translocation Chr6 8243159 Chr1 31617013 OsKitaake06g103700
Translocation Chr6 8244103 Chr1 31617014 OsKitaake06g103700
Translocation Chr6 17988413 Chr5 10627720 OsKitaake06g165400
Translocation Chr11 19188721 Chr2 7791045

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7316129	C-T	Hetero	INTERGENIC
SBS	Chr1	38191839	G-A	Hetero	INTERGENIC
SBS	Chr1	41979278	G-A	Hetero	INTERGENIC
SBS	Chr2	4905428	T-A	Hetero	INTERGENIC
SBS	Chr2	7096883	T-A	Hetero	INTRON
SBS	Chr2	7831183	A-C	Hetero	INTERGENIC
SBS	Chr2	8182920	A-G	Hetero	INTERGENIC
SBS	Chr2	27427868	A-G	Hetero	INTERGENIC
SBS	Chr5	6185400	A-T	Hetero	INTERGENIC
SBS	Chr5	13487320	A-G	Hetero	INTERGENIC
SBS	Chr5	17228393	T-A	Hetero	INTERGENIC
SBS	Chr5	19277149	A-C	Homo	INTERGENIC
SBS	Chr5	19277151	G-A	Homo	INTERGENIC
SBS	Chr5	20679626	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g165100
SBS	Chr6	643221	G-A	Hetero	INTERGENIC
SBS	Chr6	4701524	G-A	Homo	INTERGENIC
SBS	Chr6	4701527	C-T	Homo	INTERGENIC
SBS	Chr6	9058951	C-A	Hetero	INTERGENIC
SBS	Chr6	12596446	A-G	Homo	INTERGENIC
SBS	Chr6	21008340	C-T	Hetero	INTRON
SBS	Chr6	29751689	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g277900
SBS	Chr6	29768010	C-A	Homo	INTERGENIC
SBS	Chr6	29768026	G-A	Homo	INTERGENIC
SBS	Chr7	2732373	C-T	Hetero	INTERGENIC
SBS	Chr8	3122	G-A	Hetero	INTERGENIC
SBS	Chr8	13959480	G-A	Homo	INTRON
SBS	Chr8	14239295	G-C	Homo	INTERGENIC
SBS	Chr8	15757408	G-A	Hetero	INTERGENIC
SBS	Chr8	17815754	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g132900
SBS	Chr9	4837768	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g027400
SBS	Chr9	8505398	G-A	Homo	INTERGENIC
SBS	Chr9	17244580	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g129500
SBS	Chr9	19663541	A-C	Homo	UTR_3_PRIME
SBS	Chr10	21928517	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g177000
SBS	Chr11	12489586	C-T	Hetero	INTERGENIC
SBS	Chr11	18493756	G-A	Hetero	INTERGENIC
SBS	Chr11	18493757	C-A	Hetero	INTERGENIC
SBS	Chr11	21226426	C-T	Hetero	INTERGENIC
SBS	Chr12	12488210	G-A	Homo	INTERGENIC
SBS	Chr12	21109846	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	207920	207921	1
Deletion	Chr6	870350	870358	8
Deletion	Chr11	7255427	7255429	2
Deletion	Chr6	8466528	8466531	3
Deletion	Chr3	10264083	10264087	4
Deletion	Chr6	11114668	11114683	15
Deletion	Chr5	11812001	11873000	60999	OsKitaake05g096700
Deletion	Chr5	11879001	12092000	212999	8
Deletion	Chr5	12095001	12156000	60999	OsKitaake05g097700
Deletion	Chr7	12143722	12143723	1
Deletion	Chr11	15966702	15966707	5
Deletion	Chr3	17465090	17465092	2
Deletion	Chr12	18663876	18663880	4
Deletion	Chr12	19796357	19796363	6
Deletion	Chr11	21091405	21091410	5
Deletion	Chr5	26253792	26253796	4
Deletion	Chr3	29004593	29004602	9
Deletion	Chr4	29116172	29116173	1
Deletion	Chr1	34310950	34310953	3
Deletion	Chr4	35391855	35391861	6
Deletion	Chr4	35961822	35961823	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8081030	8167238
Inversion	Chr2	8081035	8167248
Inversion	Chr3	11537402	11745606
Inversion	Chr3	11537414	11745614
Inversion	Chr11	19036320	19187312
Inversion	Chr11	19036326	19192329

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes