Search Kitaake

Mutant Information

Mutant Name	FN2588-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2588-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12340816 G-A Hetero INTRON
SBS Chr1 19650195 G-A Hetero INTERGENIC
SBS Chr1 27206138 G-A Hetero INTERGENIC
SBS Chr1 33922970 G-T Hetero INTERGENIC
SBS Chr2 5298921 G-A Hetero UTR_3_PRIME
SBS Chr2 5298922 T-A Hetero UTR_3_PRIME
SBS Chr2 14999897 G-T Hetero INTERGENIC
SBS Chr2 15521276 C-T Hetero INTERGENIC
SBS Chr3 232497 C-T Homo INTERGENIC
SBS Chr3 13542814 A-T Hetero INTERGENIC
SBS Chr3 15746313 C-T Hetero INTERGENIC
SBS Chr3 20460406 C-A Hetero INTERGENIC
SBS Chr3 21309624 C-T Hetero INTERGENIC
SBS Chr3 26245118 C-T Hetero INTERGENIC
SBS Chr3 31854987 T-C Hetero INTRON
SBS Chr3 37294746 C-T Hetero INTERGENIC
SBS Chr4 13594085 T-G Hetero INTERGENIC
SBS Chr4 15951265 G-T Hetero INTERGENIC
SBS Chr4 19482597 G-A Hetero INTERGENIC
SBS Chr4 30314703 C-T Hetero INTERGENIC
SBS Chr4 33079199 C-T Hetero INTERGENIC
SBS Chr5 1194735 T-C Hetero INTERGENIC
SBS Chr5 3843498 C-T Hetero INTERGENIC
SBS Chr5 7116546 G-A Hetero INTERGENIC
SBS Chr5 23323492 C-T Homo UTR_5_PRIME
SBS Chr5 24355120 C-T Homo INTERGENIC
SBS Chr5 25799907 G-A Homo INTERGENIC
SBS Chr5 25898889 T-G Homo INTERGENIC
SBS Chr5 27829526 G-C Homo INTRON
SBS Chr6 13141372 G-A Hetero INTERGENIC
SBS Chr7 10023219 G-A Hetero UTR_3_PRIME
SBS Chr8 2446540 C-T Hetero INTERGENIC
SBS Chr8 6126457 T-C Hetero INTERGENIC
SBS Chr8 10636595 C-T Hetero INTERGENIC
SBS Chr8 17052628 G-T Hetero INTERGENIC
SBS Chr9 7595962 C-G Hetero INTERGENIC
SBS Chr9 9845609 T-C Homo INTERGENIC
SBS Chr10 7843827 C-T Hetero INTERGENIC
SBS Chr10 11658780 G-A Homo INTERGENIC
SBS Chr11 6731700 C-T Hetero INTERGENIC
SBS Chr11 10328683 G-A Hetero INTERGENIC
SBS Chr11 26960046 G-A Homo INTERGENIC
SBS Chr12 10063412 A-C Hetero SPLICE_SITE_REGION
SBS Chr12 24686005 T-G Hetero INTERGENIC
SBS Chr12 26103913 G-T Hetero INTERGENIC
SBS Chr12 27055543 G-A Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2446817 2446818 1 OsKitaake06g032300
Deletion Chr11 2833273 2833274 1 OsKitaake11g040100
Deletion Chr9 3050001 3068000 17999 OsKitaake09g016300
Deletion Chr8 3891001 3972000 80999 5
Deletion Chr8 7125064 7125072 8
Deletion Chr1 10206001 10238000 31999 3
Deletion Chr4 12427518 12427531 13
Deletion Chr12 12595001 12617000 21999 5
Deletion Chr2 12710457 12710465 8
Deletion Chr8 15609559 15609571 12
Deletion Chr11 17891383 17891385 2
Deletion Chr12 18339464 18339531 67
Deletion Chr4 19338001 19358000 19999
Deletion Chr6 20307667 20307672 5
Deletion Chr7 20549589 20549591 2
Deletion Chr2 24425104 24425116 12
Deletion Chr6 25181001 25210000 28999 2
Deletion Chr2 27137376 27137398 22
Deletion Chr1 41322001 41341000 18999 2
Deletion Chr1 41343001 41374000 30999

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 20254832 20254836 3
Insertion Chr8 27499608 27499611 2
Insertion Chr10 22480988 22480991 2
Insertion Chr3 32163140 32163143 2 OsKitaake03g340900

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 9425146 9684529 OsKitaake10g054600
Inversion Chr10 9425150 9684538 OsKitaake10g054600
Inversion Chr3 23459537 23475568
Inversion Chr3 23459550 23482359

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 3969262 Chr7 4603076
Translocation Chr8 4009821 Chr7 4603084
Translocation Chr7 11201900 Chr3 32256831 2
Translocation Chr7 11201903 Chr3 32248586 OsKitaake07g105200
Translocation Chr4 33700736 Chr2 26882348 OsKitaake04g280000
Translocation Chr4 33700746 Chr2 26851173 OsKitaake04g280000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12340816	G-A	Hetero	INTRON
SBS	Chr1	19650195	G-A	Hetero	INTERGENIC
SBS	Chr1	27206138	G-A	Hetero	INTERGENIC
SBS	Chr1	33922970	G-T	Hetero	INTERGENIC
SBS	Chr2	5298921	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	5298922	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	14999897	G-T	Hetero	INTERGENIC
SBS	Chr2	15521276	C-T	Hetero	INTERGENIC
SBS	Chr3	232497	C-T	Homo	INTERGENIC
SBS	Chr3	13542814	A-T	Hetero	INTERGENIC
SBS	Chr3	15746313	C-T	Hetero	INTERGENIC
SBS	Chr3	20460406	C-A	Hetero	INTERGENIC
SBS	Chr3	21309624	C-T	Hetero	INTERGENIC
SBS	Chr3	26245118	C-T	Hetero	INTERGENIC
SBS	Chr3	31854987	T-C	Hetero	INTRON
SBS	Chr3	37294746	C-T	Hetero	INTERGENIC
SBS	Chr4	13594085	T-G	Hetero	INTERGENIC
SBS	Chr4	15951265	G-T	Hetero	INTERGENIC
SBS	Chr4	19482597	G-A	Hetero	INTERGENIC
SBS	Chr4	30314703	C-T	Hetero	INTERGENIC
SBS	Chr4	33079199	C-T	Hetero	INTERGENIC
SBS	Chr5	1194735	T-C	Hetero	INTERGENIC
SBS	Chr5	3843498	C-T	Hetero	INTERGENIC
SBS	Chr5	7116546	G-A	Hetero	INTERGENIC
SBS	Chr5	23323492	C-T	Homo	UTR_5_PRIME
SBS	Chr5	24355120	C-T	Homo	INTERGENIC
SBS	Chr5	25799907	G-A	Homo	INTERGENIC
SBS	Chr5	25898889	T-G	Homo	INTERGENIC
SBS	Chr5	27829526	G-C	Homo	INTRON
SBS	Chr6	13141372	G-A	Hetero	INTERGENIC
SBS	Chr7	10023219	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	2446540	C-T	Hetero	INTERGENIC
SBS	Chr8	6126457	T-C	Hetero	INTERGENIC
SBS	Chr8	10636595	C-T	Hetero	INTERGENIC
SBS	Chr8	17052628	G-T	Hetero	INTERGENIC
SBS	Chr9	7595962	C-G	Hetero	INTERGENIC
SBS	Chr9	9845609	T-C	Homo	INTERGENIC
SBS	Chr10	7843827	C-T	Hetero	INTERGENIC
SBS	Chr10	11658780	G-A	Homo	INTERGENIC
SBS	Chr11	6731700	C-T	Hetero	INTERGENIC
SBS	Chr11	10328683	G-A	Hetero	INTERGENIC
SBS	Chr11	26960046	G-A	Homo	INTERGENIC
SBS	Chr12	10063412	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr12	24686005	T-G	Hetero	INTERGENIC
SBS	Chr12	26103913	G-T	Hetero	INTERGENIC
SBS	Chr12	27055543	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2446817	2446818	1	OsKitaake06g032300
Deletion	Chr11	2833273	2833274	1	OsKitaake11g040100
Deletion	Chr9	3050001	3068000	17999	OsKitaake09g016300
Deletion	Chr8	3891001	3972000	80999	5
Deletion	Chr8	7125064	7125072	8
Deletion	Chr1	10206001	10238000	31999	3
Deletion	Chr4	12427518	12427531	13
Deletion	Chr12	12595001	12617000	21999	5
Deletion	Chr2	12710457	12710465	8
Deletion	Chr8	15609559	15609571	12
Deletion	Chr11	17891383	17891385	2
Deletion	Chr12	18339464	18339531	67
Deletion	Chr4	19338001	19358000	19999
Deletion	Chr6	20307667	20307672	5
Deletion	Chr7	20549589	20549591	2
Deletion	Chr2	24425104	24425116	12
Deletion	Chr6	25181001	25210000	28999	2
Deletion	Chr2	27137376	27137398	22
Deletion	Chr1	41322001	41341000	18999	2
Deletion	Chr1	41343001	41374000	30999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9425146	9684529	OsKitaake10g054600
Inversion	Chr10	9425150	9684538	OsKitaake10g054600
Inversion	Chr3	23459537	23475568
Inversion	Chr3	23459550	23482359

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes