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Mutant Information

Mutant Name	FN2589-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2589-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8933348 A-G Hetero INTRON
SBS Chr1 22203489 T-C Hetero INTERGENIC
SBS Chr1 22754295 C-G Hetero INTERGENIC
SBS Chr1 22814542 G-A Hetero INTERGENIC
SBS Chr1 35618577 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 39774856 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g430100
SBS Chr2 23414805 C-T Hetero INTRON
SBS Chr2 35459414 A-T Hetero INTERGENIC
SBS Chr3 8269316 G-T Hetero INTERGENIC
SBS Chr3 10137972 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g138800
SBS Chr3 27178352 C-T Hetero INTERGENIC
SBS Chr3 32047159 C-T Hetero INTERGENIC
SBS Chr3 33658728 T-C Hetero UTR_3_PRIME
SBS Chr4 1552611 C-T Hetero INTERGENIC
SBS Chr4 1552612 C-T Hetero INTERGENIC
SBS Chr4 13646473 T-A Hetero INTERGENIC
SBS Chr5 23204337 C-A Hetero SYNONYMOUS_CODING
SBS Chr6 9418000 C-T Hetero INTERGENIC
SBS Chr6 14116857 G-A Hetero INTERGENIC
SBS Chr6 24725040 T-C Hetero INTERGENIC
SBS Chr6 27588940 A-G Hetero INTERGENIC
SBS Chr6 29246320 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 312329 G-A Homo INTERGENIC
SBS Chr7 9251843 T-G Hetero INTERGENIC
SBS Chr7 9486360 C-G Hetero INTERGENIC
SBS Chr7 18512089 A-G Hetero INTRON
SBS Chr7 21785198 A-G Hetero SYNONYMOUS_CODING
SBS Chr8 3093096 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g034800
SBS Chr8 3751279 C-T Hetero INTERGENIC
SBS Chr8 6226354 C-A Hetero INTERGENIC
SBS Chr8 11108107 G-A Homo INTERGENIC
SBS Chr8 22624565 T-A Homo INTRON
SBS Chr10 604839 T-G Homo INTERGENIC
SBS Chr10 645659 A-T Hetero INTERGENIC
SBS Chr10 9860306 A-T Hetero INTRON
SBS Chr11 7421314 A-T Hetero UTR_3_PRIME
SBS Chr11 10606907 G-A Homo INTERGENIC
SBS Chr12 2267064 C-T Homo INTERGENIC
SBS Chr12 12343438 C-T Hetero INTERGENIC
SBS Chr12 14418047 A-G Hetero INTRON
SBS Chr12 14674557 T-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 189001 407000 217999 29
Deletion Chr5 1241363 1241364 1
Deletion Chr2 10813412 10813422 10
Deletion Chr9 13772181 13772193 12
Deletion Chr5 14688961 14688965 4
Deletion Chr2 19792691 19792693 2
Deletion Chr5 21350522 21350527 5
Deletion Chr3 24093540 24093558 18
Deletion Chr2 26106947 26106948 1
Deletion Chr4 27160143 27160157 14
Deletion Chr4 32402798 32402801 3 OsKitaake04g259000

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3917659 3917662 2
Insertion Chr5 5510289 5510292 2
Insertion Chr5 30185422 30185425 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 12825813 13057241 2
Inversion Chr7 12825816 13072529 OsKitaake07g113700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 11472686 Chr2 21385170 OsKitaake02g206300
Translocation Chr6 11472693 Chr2 21389238

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8933348	A-G	Hetero	INTRON
SBS	Chr1	22203489	T-C	Hetero	INTERGENIC
SBS	Chr1	22754295	C-G	Hetero	INTERGENIC
SBS	Chr1	22814542	G-A	Hetero	INTERGENIC
SBS	Chr1	35618577	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	39774856	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g430100
SBS	Chr2	23414805	C-T	Hetero	INTRON
SBS	Chr2	35459414	A-T	Hetero	INTERGENIC
SBS	Chr3	8269316	G-T	Hetero	INTERGENIC
SBS	Chr3	10137972	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g138800
SBS	Chr3	27178352	C-T	Hetero	INTERGENIC
SBS	Chr3	32047159	C-T	Hetero	INTERGENIC
SBS	Chr3	33658728	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	1552611	C-T	Hetero	INTERGENIC
SBS	Chr4	1552612	C-T	Hetero	INTERGENIC
SBS	Chr4	13646473	T-A	Hetero	INTERGENIC
SBS	Chr5	23204337	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	9418000	C-T	Hetero	INTERGENIC
SBS	Chr6	14116857	G-A	Hetero	INTERGENIC
SBS	Chr6	24725040	T-C	Hetero	INTERGENIC
SBS	Chr6	27588940	A-G	Hetero	INTERGENIC
SBS	Chr6	29246320	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	312329	G-A	Homo	INTERGENIC
SBS	Chr7	9251843	T-G	Hetero	INTERGENIC
SBS	Chr7	9486360	C-G	Hetero	INTERGENIC
SBS	Chr7	18512089	A-G	Hetero	INTRON
SBS	Chr7	21785198	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr8	3093096	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g034800
SBS	Chr8	3751279	C-T	Hetero	INTERGENIC
SBS	Chr8	6226354	C-A	Hetero	INTERGENIC
SBS	Chr8	11108107	G-A	Homo	INTERGENIC
SBS	Chr8	22624565	T-A	Homo	INTRON
SBS	Chr10	604839	T-G	Homo	INTERGENIC
SBS	Chr10	645659	A-T	Hetero	INTERGENIC
SBS	Chr10	9860306	A-T	Hetero	INTRON
SBS	Chr11	7421314	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	10606907	G-A	Homo	INTERGENIC
SBS	Chr12	2267064	C-T	Homo	INTERGENIC
SBS	Chr12	12343438	C-T	Hetero	INTERGENIC
SBS	Chr12	14418047	A-G	Hetero	INTRON
SBS	Chr12	14674557	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	189001	407000	217999	29
Deletion	Chr5	1241363	1241364	1
Deletion	Chr2	10813412	10813422	10
Deletion	Chr9	13772181	13772193	12
Deletion	Chr5	14688961	14688965	4
Deletion	Chr2	19792691	19792693	2
Deletion	Chr5	21350522	21350527	5
Deletion	Chr3	24093540	24093558	18
Deletion	Chr2	26106947	26106948	1
Deletion	Chr4	27160143	27160157	14
Deletion	Chr4	32402798	32402801	3	OsKitaake04g259000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	12825813	13057241	2
Inversion	Chr7	12825816	13072529	OsKitaake07g113700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes