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Mutant Information

Mutant Name	FN2591-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2591-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4669750 C-A Homo UTR_3_PRIME
SBS Chr1 5731032 A-T Hetero INTERGENIC
SBS Chr1 17147193 A-G Hetero INTERGENIC
SBS Chr1 27085144 G-T Hetero INTERGENIC
SBS Chr1 33171113 G-A Hetero INTERGENIC
SBS Chr1 40576743 T-C Hetero UTR_3_PRIME
SBS Chr1 43680579 A-G Hetero UTR_5_PRIME
SBS Chr2 27164321 A-T Hetero INTERGENIC
SBS Chr3 26744550 T-A Hetero INTRON
SBS Chr3 26744551 C-A Hetero INTRON
SBS Chr3 26962980 C-G Hetero INTERGENIC
SBS Chr3 29980488 T-C Hetero UTR_3_PRIME
SBS Chr4 8895568 G-A Hetero INTERGENIC
SBS Chr4 9127267 C-T Hetero INTERGENIC
SBS Chr4 10760517 A-T Homo INTERGENIC
SBS Chr4 28460369 A-G Hetero INTRON
SBS Chr4 29111951 T-C Hetero UTR_5_PRIME
SBS Chr4 29321600 T-A Hetero UTR_3_PRIME
SBS Chr4 35303561 C-T Hetero INTERGENIC
SBS Chr5 14433814 G-T Hetero INTERGENIC
SBS Chr5 19614147 G-A Hetero INTERGENIC
SBS Chr5 29647525 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g283100
SBS Chr6 14816374 C-T Hetero INTERGENIC
SBS Chr6 20426592 C-T Hetero INTERGENIC
SBS Chr6 30799922 T-C Hetero INTERGENIC
SBS Chr7 8600721 G-C Homo INTERGENIC
SBS Chr7 10707305 G-A Hetero INTERGENIC
SBS Chr7 10848524 G-A Hetero INTERGENIC
SBS Chr8 19171166 C-A Hetero INTERGENIC
SBS Chr9 7468849 T-C Hetero INTERGENIC
SBS Chr10 11107519 A-G Homo INTERGENIC
SBS Chr11 10489143 C-T Hetero INTERGENIC
SBS Chr11 18039485 T-C Hetero UTR_3_PRIME
SBS Chr12 1474625 G-A Homo INTRON
SBS Chr12 14675277 G-A Hetero INTERGENIC
SBS Chr12 25151114 G-T Hetero INTERGENIC
SBS Chr12 26286087 A-T Hetero INTRON

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 126363 126365 2
Deletion Chr7 11991294 11991296 2
Deletion Chr11 13627337 13627339 2
Deletion Chr1 14772120 14772199 79 OsKitaake01g167100

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 13042713 13042716 2
Insertion Chr5 30232136 30232144 7
Insertion Chr9 10068067 10068069 1
Insertion Chr11 26165991 26165996 4

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 11245337 Chr2 31467606
Translocation Chr6 26387571 Chr3 32859129 OsKitaake06g236800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4669750	C-A	Homo	UTR_3_PRIME
SBS	Chr1	5731032	A-T	Hetero	INTERGENIC
SBS	Chr1	17147193	A-G	Hetero	INTERGENIC
SBS	Chr1	27085144	G-T	Hetero	INTERGENIC
SBS	Chr1	33171113	G-A	Hetero	INTERGENIC
SBS	Chr1	40576743	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	43680579	A-G	Hetero	UTR_5_PRIME
SBS	Chr2	27164321	A-T	Hetero	INTERGENIC
SBS	Chr3	26744550	T-A	Hetero	INTRON
SBS	Chr3	26744551	C-A	Hetero	INTRON
SBS	Chr3	26962980	C-G	Hetero	INTERGENIC
SBS	Chr3	29980488	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	8895568	G-A	Hetero	INTERGENIC
SBS	Chr4	9127267	C-T	Hetero	INTERGENIC
SBS	Chr4	10760517	A-T	Homo	INTERGENIC
SBS	Chr4	28460369	A-G	Hetero	INTRON
SBS	Chr4	29111951	T-C	Hetero	UTR_5_PRIME
SBS	Chr4	29321600	T-A	Hetero	UTR_3_PRIME
SBS	Chr4	35303561	C-T	Hetero	INTERGENIC
SBS	Chr5	14433814	G-T	Hetero	INTERGENIC
SBS	Chr5	19614147	G-A	Hetero	INTERGENIC
SBS	Chr5	29647525	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g283100
SBS	Chr6	14816374	C-T	Hetero	INTERGENIC
SBS	Chr6	20426592	C-T	Hetero	INTERGENIC
SBS	Chr6	30799922	T-C	Hetero	INTERGENIC
SBS	Chr7	8600721	G-C	Homo	INTERGENIC
SBS	Chr7	10707305	G-A	Hetero	INTERGENIC
SBS	Chr7	10848524	G-A	Hetero	INTERGENIC
SBS	Chr8	19171166	C-A	Hetero	INTERGENIC
SBS	Chr9	7468849	T-C	Hetero	INTERGENIC
SBS	Chr10	11107519	A-G	Homo	INTERGENIC
SBS	Chr11	10489143	C-T	Hetero	INTERGENIC
SBS	Chr11	18039485	T-C	Hetero	UTR_3_PRIME
SBS	Chr12	1474625	G-A	Homo	INTRON
SBS	Chr12	14675277	G-A	Hetero	INTERGENIC
SBS	Chr12	25151114	G-T	Hetero	INTERGENIC
SBS	Chr12	26286087	A-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	126363	126365	2
Deletion	Chr7	11991294	11991296	2
Deletion	Chr11	13627337	13627339	2
Deletion	Chr1	14772120	14772199	79	OsKitaake01g167100

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	11245337	Chr2	31467606
Translocation	Chr6	26387571	Chr3	32859129	OsKitaake06g236800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes