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Mutant Information

Mutant Name	FN2592-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2592-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12763596 C-A Homo INTRON
SBS Chr1 17330074 C-A Hetero INTERGENIC
SBS Chr1 33553992 T-C Hetero INTERGENIC
SBS Chr1 44259954 G-A Hetero INTRON
SBS Chr3 12752872 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g171900
SBS Chr3 14513763 G-C Hetero INTERGENIC
SBS Chr3 19941201 A-T Hetero INTRON
SBS Chr3 22090228 A-C Hetero SYNONYMOUS_CODING
SBS Chr4 10843788 C-T Hetero INTERGENIC
SBS Chr4 18082532 C-A Homo INTERGENIC
SBS Chr4 26110806 G-A Hetero INTERGENIC
SBS Chr4 33019512 A-T Hetero INTERGENIC
SBS Chr4 33740788 A-T Hetero INTERGENIC
SBS Chr6 7962025 G-C Homo INTERGENIC
SBS Chr6 26130992 C-A Hetero INTERGENIC
SBS Chr6 30558267 C-T Hetero INTRON
SBS Chr7 18320048 G-A Hetero INTERGENIC
SBS Chr7 18951212 C-T Hetero INTERGENIC
SBS Chr8 4597860 T-C Homo INTERGENIC
SBS Chr8 5783140 C-T Homo INTERGENIC
SBS Chr8 11440635 C-T Hetero INTERGENIC
SBS Chr8 27647946 G-A Hetero INTERGENIC
SBS Chr10 6993477 T-A Hetero INTERGENIC
SBS Chr10 13738280 C-T Hetero INTERGENIC
SBS Chr11 24031365 G-A Homo INTERGENIC
SBS Chr12 11151464 G-A Homo INTERGENIC
SBS Chr12 16255265 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g123900

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 706240 706241 1
Deletion Chr3 3334336 3334341 5 OsKitaake03g047300
Deletion Chr5 6796445 6796449 4
Deletion Chr8 8467996 8468003 7
Deletion Chr3 9268312 9268315 3
Deletion Chr10 11829471 11829472 1
Deletion Chr2 13001471 13001472 1
Deletion Chr7 13724001 13728000 3999
Deletion Chr5 17306304 17306324 20
Deletion Chr9 18895521 18895524 3
Deletion Chr6 20863224 20863232 8
Deletion Chr1 21272029 21272039 10
Deletion Chr1 21385332 21385333 1
Deletion Chr11 23555344 23555347 3
Deletion Chr4 23827707 23827714 7
Deletion Chr6 24475725 24475731 6
Deletion Chr4 24613227 24613231 4
Deletion Chr11 25711932 25711935 3
Deletion Chr2 28316332 28316333 1
Deletion Chr1 29368905 29368909 4
Deletion Chr4 29658045 29658046 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 39755973 39755975 1
Insertion Chr7 28564685 28564688 2
Insertion Chr8 28092269 28092271 1
Insertion Chr11 2946553 2946556 2
Insertion Chr11 19115274 19115280 5

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 9609576 9701714
Inversion Chr10 9609609 9701742
Inversion Chr8 18176321 18598175
Inversion Chr8 18176333 18598178

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 17890735 Chr5 30174740 OsKitaake09g136300
Translocation Chr9 18920812 Chr5 30165108 OsKitaake09g151000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12763596	C-A	Homo	INTRON
SBS	Chr1	17330074	C-A	Hetero	INTERGENIC
SBS	Chr1	33553992	T-C	Hetero	INTERGENIC
SBS	Chr1	44259954	G-A	Hetero	INTRON
SBS	Chr3	12752872	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g171900
SBS	Chr3	14513763	G-C	Hetero	INTERGENIC
SBS	Chr3	19941201	A-T	Hetero	INTRON
SBS	Chr3	22090228	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	10843788	C-T	Hetero	INTERGENIC
SBS	Chr4	18082532	C-A	Homo	INTERGENIC
SBS	Chr4	26110806	G-A	Hetero	INTERGENIC
SBS	Chr4	33019512	A-T	Hetero	INTERGENIC
SBS	Chr4	33740788	A-T	Hetero	INTERGENIC
SBS	Chr6	7962025	G-C	Homo	INTERGENIC
SBS	Chr6	26130992	C-A	Hetero	INTERGENIC
SBS	Chr6	30558267	C-T	Hetero	INTRON
SBS	Chr7	18320048	G-A	Hetero	INTERGENIC
SBS	Chr7	18951212	C-T	Hetero	INTERGENIC
SBS	Chr8	4597860	T-C	Homo	INTERGENIC
SBS	Chr8	5783140	C-T	Homo	INTERGENIC
SBS	Chr8	11440635	C-T	Hetero	INTERGENIC
SBS	Chr8	27647946	G-A	Hetero	INTERGENIC
SBS	Chr10	6993477	T-A	Hetero	INTERGENIC
SBS	Chr10	13738280	C-T	Hetero	INTERGENIC
SBS	Chr11	24031365	G-A	Homo	INTERGENIC
SBS	Chr12	11151464	G-A	Homo	INTERGENIC
SBS	Chr12	16255265	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g123900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	706240	706241	1
Deletion	Chr3	3334336	3334341	5	OsKitaake03g047300
Deletion	Chr5	6796445	6796449	4
Deletion	Chr8	8467996	8468003	7
Deletion	Chr3	9268312	9268315	3
Deletion	Chr10	11829471	11829472	1
Deletion	Chr2	13001471	13001472	1
Deletion	Chr7	13724001	13728000	3999
Deletion	Chr5	17306304	17306324	20
Deletion	Chr9	18895521	18895524	3
Deletion	Chr6	20863224	20863232	8
Deletion	Chr1	21272029	21272039	10
Deletion	Chr1	21385332	21385333	1
Deletion	Chr11	23555344	23555347	3
Deletion	Chr4	23827707	23827714	7
Deletion	Chr6	24475725	24475731	6
Deletion	Chr4	24613227	24613231	4
Deletion	Chr11	25711932	25711935	3
Deletion	Chr2	28316332	28316333	1
Deletion	Chr1	29368905	29368909	4
Deletion	Chr4	29658045	29658046	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9609576	9701714
Inversion	Chr10	9609609	9701742
Inversion	Chr8	18176321	18598175
Inversion	Chr8	18176333	18598178

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes