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Mutant Information

Mutant Name	FN2593-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2593-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 78

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5077435 G-T Hetero INTERGENIC
SBS Chr1 6355134 G-A Hetero INTRON
SBS Chr1 15982412 A-G Hetero INTERGENIC
SBS Chr1 17003173 C-A Hetero INTERGENIC
SBS Chr1 17162499 G-C Hetero INTERGENIC
SBS Chr1 17593542 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g179800
SBS Chr1 19789674 C-T Hetero INTERGENIC
SBS Chr1 24060651 A-G Hetero INTRON
SBS Chr1 24728770 C-T Hetero INTERGENIC
SBS Chr1 30141922 T-A Hetero INTERGENIC
SBS Chr1 32069638 A-T Hetero INTERGENIC
SBS Chr1 37594373 C-G Hetero INTERGENIC
SBS Chr2 689124 C-T Hetero INTERGENIC
SBS Chr2 9867723 G-C Hetero INTERGENIC
SBS Chr2 11920665 C-T Hetero INTERGENIC
SBS Chr2 14268664 C-T Hetero INTERGENIC
SBS Chr2 14948898 G-T Hetero INTERGENIC
SBS Chr2 15108815 G-A Hetero INTERGENIC
SBS Chr2 18085817 G-C Hetero INTERGENIC
SBS Chr3 703401 C-T Hetero INTERGENIC
SBS Chr3 18669579 C-G Hetero INTERGENIC
SBS Chr3 24299819 C-A Hetero INTERGENIC
SBS Chr3 25424901 G-C Hetero INTERGENIC
SBS Chr3 26221982 G-A Homo INTERGENIC
SBS Chr3 28842844 G-A Hetero INTERGENIC
SBS Chr3 31059304 C-G Hetero UTR_3_PRIME
SBS Chr4 4204775 G-A Hetero INTERGENIC
SBS Chr4 11204722 T-C Hetero INTERGENIC
SBS Chr4 16833716 G-T Hetero INTERGENIC
SBS Chr4 16833717 G-T Hetero INTERGENIC
SBS Chr4 22161102 A-T Hetero INTERGENIC
SBS Chr4 23685660 G-A Hetero INTERGENIC
SBS Chr4 26097918 G-A Homo INTRON
SBS Chr4 27530929 G-T Hetero INTERGENIC
SBS Chr4 28919654 A-T Homo INTERGENIC
SBS Chr4 31235025 T-G Hetero INTERGENIC
SBS Chr4 34227638 G-A Hetero INTERGENIC
SBS Chr5 2899907 G-T Hetero SYNONYMOUS_CODING
SBS Chr5 6849696 T-A Homo INTERGENIC
SBS Chr5 11408111 G-T Hetero INTERGENIC
SBS Chr5 11914004 G-T Hetero INTERGENIC
SBS Chr5 12184517 C-G Hetero INTERGENIC
SBS Chr5 14453801 C-T Hetero INTERGENIC
SBS Chr5 15535909 C-G Hetero INTERGENIC
SBS Chr5 22124390 A-C Homo INTERGENIC
SBS Chr5 27571989 A-T Hetero INTERGENIC
SBS Chr5 29837099 G-T Hetero INTERGENIC
SBS Chr6 11017932 T-A Hetero UTR_3_PRIME
SBS Chr6 28300898 A-G Hetero INTERGENIC
SBS Chr7 11234924 C-A Hetero INTERGENIC
SBS Chr8 562539 T-A Hetero INTERGENIC
SBS Chr8 3456849 G-T Hetero INTERGENIC
SBS Chr8 4649166 C-A Hetero INTRON
SBS Chr8 22622441 T-C Homo INTRON
SBS Chr9 1571199 A-G Hetero INTERGENIC
SBS Chr9 7105030 A-G Hetero INTERGENIC
SBS Chr9 18775068 G-T Hetero INTERGENIC
SBS Chr10 6687499 G-A Hetero INTRON
SBS Chr10 7630221 G-C Hetero INTERGENIC
SBS Chr10 9253813 A-C Hetero INTERGENIC
SBS Chr10 10129051 T-A Hetero INTERGENIC
SBS Chr10 12849262 G-A Hetero INTERGENIC
SBS Chr10 14042622 G-A Hetero INTERGENIC
SBS Chr10 17338789 C-T Hetero INTERGENIC
SBS Chr10 19380553 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g141100
SBS Chr11 6642315 C-G Hetero SYNONYMOUS_CODING
SBS Chr11 7440032 A-T Hetero INTRON
SBS Chr11 7642356 C-T Hetero INTERGENIC
SBS Chr11 22038795 C-T Hetero INTERGENIC
SBS Chr11 25135148 C-G Hetero INTERGENIC
SBS Chr12 546156 T-C Hetero INTRON
SBS Chr12 906128 A-G Hetero UTR_3_PRIME
SBS Chr12 2513117 G-A Hetero INTERGENIC
SBS Chr12 11613635 G-A Homo INTERGENIC
SBS Chr12 18612502 C-A Hetero INTRON
SBS Chr12 21853637 T-G Hetero INTERGENIC
SBS Chr12 23357147 C-A Hetero INTRON
SBS Chr12 24018905 C-T Hetero INTERGENIC

Deletions: 33

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 537058 537065 7
Deletion Chr4 2030977 2030984 7
Deletion Chr12 2223258 2223273 15
Deletion Chr2 3295507 3295533 26 OsKitaake02g048000
Deletion Chr2 3498523 3498525 2
Deletion Chr3 5189312 5189316 4
Deletion Chr4 8366728 8366756 28
Deletion Chr6 9102696 9102697 1
Deletion Chr2 9641010 9641014 4
Deletion Chr9 10620348 10620351 3
Deletion Chr8 11523575 11523576 1
Deletion Chr10 12942717 12942731 14
Deletion Chr8 13487617 13487622 5
Deletion Chr7 13614021 13614032 11
Deletion Chr9 14179769 14179781 12
Deletion Chr4 15424542 15424544 2
Deletion Chr11 16204450 16204465 15
Deletion Chr9 19555010 19555011 1
Deletion Chr5 20441541 20441542 1
Deletion Chr5 21804540 21804546 6
Deletion Chr7 22980434 22980435 1
Deletion Chr1 23799295 23799296 1
Deletion Chr6 24946751 24946764 13 OsKitaake06g221800
Deletion Chr6 25074619 25074620 1
Deletion Chr1 25109216 25109217 1
Deletion Chr3 25645009 25645027 18
Deletion Chr11 26389273 26389283 10
Deletion Chr5 26962024 26962028 4 OsKitaake05g241500
Deletion Chr7 28142879 28142884 5
Deletion Chr11 28584165 28584170 5
Deletion Chr1 32614073 32614098 25
Deletion Chr1 34683312 34683313 1
Deletion Chr2 34858613 34858614 1 OsKitaake02g363400

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 16595526 16595528 1
Insertion Chr8 13713489 13713492 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 6073307 Chr1 30915871 OsKitaake03g087100
Translocation Chr3 6081032 Chr1 30915858 OsKitaake03g087300
Translocation Chr10 6328194 Chr1 41408894 OsKitaake01g452100
Translocation Chr10 6328689 Chr1 33554903

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5077435	G-T	Hetero	INTERGENIC
SBS	Chr1	6355134	G-A	Hetero	INTRON
SBS	Chr1	15982412	A-G	Hetero	INTERGENIC
SBS	Chr1	17003173	C-A	Hetero	INTERGENIC
SBS	Chr1	17162499	G-C	Hetero	INTERGENIC
SBS	Chr1	17593542	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g179800
SBS	Chr1	19789674	C-T	Hetero	INTERGENIC
SBS	Chr1	24060651	A-G	Hetero	INTRON
SBS	Chr1	24728770	C-T	Hetero	INTERGENIC
SBS	Chr1	30141922	T-A	Hetero	INTERGENIC
SBS	Chr1	32069638	A-T	Hetero	INTERGENIC
SBS	Chr1	37594373	C-G	Hetero	INTERGENIC
SBS	Chr2	689124	C-T	Hetero	INTERGENIC
SBS	Chr2	9867723	G-C	Hetero	INTERGENIC
SBS	Chr2	11920665	C-T	Hetero	INTERGENIC
SBS	Chr2	14268664	C-T	Hetero	INTERGENIC
SBS	Chr2	14948898	G-T	Hetero	INTERGENIC
SBS	Chr2	15108815	G-A	Hetero	INTERGENIC
SBS	Chr2	18085817	G-C	Hetero	INTERGENIC
SBS	Chr3	703401	C-T	Hetero	INTERGENIC
SBS	Chr3	18669579	C-G	Hetero	INTERGENIC
SBS	Chr3	24299819	C-A	Hetero	INTERGENIC
SBS	Chr3	25424901	G-C	Hetero	INTERGENIC
SBS	Chr3	26221982	G-A	Homo	INTERGENIC
SBS	Chr3	28842844	G-A	Hetero	INTERGENIC
SBS	Chr3	31059304	C-G	Hetero	UTR_3_PRIME
SBS	Chr4	4204775	G-A	Hetero	INTERGENIC
SBS	Chr4	11204722	T-C	Hetero	INTERGENIC
SBS	Chr4	16833716	G-T	Hetero	INTERGENIC
SBS	Chr4	16833717	G-T	Hetero	INTERGENIC
SBS	Chr4	22161102	A-T	Hetero	INTERGENIC
SBS	Chr4	23685660	G-A	Hetero	INTERGENIC
SBS	Chr4	26097918	G-A	Homo	INTRON
SBS	Chr4	27530929	G-T	Hetero	INTERGENIC
SBS	Chr4	28919654	A-T	Homo	INTERGENIC
SBS	Chr4	31235025	T-G	Hetero	INTERGENIC
SBS	Chr4	34227638	G-A	Hetero	INTERGENIC
SBS	Chr5	2899907	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	6849696	T-A	Homo	INTERGENIC
SBS	Chr5	11408111	G-T	Hetero	INTERGENIC
SBS	Chr5	11914004	G-T	Hetero	INTERGENIC
SBS	Chr5	12184517	C-G	Hetero	INTERGENIC
SBS	Chr5	14453801	C-T	Hetero	INTERGENIC
SBS	Chr5	15535909	C-G	Hetero	INTERGENIC
SBS	Chr5	22124390	A-C	Homo	INTERGENIC
SBS	Chr5	27571989	A-T	Hetero	INTERGENIC
SBS	Chr5	29837099	G-T	Hetero	INTERGENIC
SBS	Chr6	11017932	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	28300898	A-G	Hetero	INTERGENIC
SBS	Chr7	11234924	C-A	Hetero	INTERGENIC
SBS	Chr8	562539	T-A	Hetero	INTERGENIC
SBS	Chr8	3456849	G-T	Hetero	INTERGENIC
SBS	Chr8	4649166	C-A	Hetero	INTRON
SBS	Chr8	22622441	T-C	Homo	INTRON
SBS	Chr9	1571199	A-G	Hetero	INTERGENIC
SBS	Chr9	7105030	A-G	Hetero	INTERGENIC
SBS	Chr9	18775068	G-T	Hetero	INTERGENIC
SBS	Chr10	6687499	G-A	Hetero	INTRON
SBS	Chr10	7630221	G-C	Hetero	INTERGENIC
SBS	Chr10	9253813	A-C	Hetero	INTERGENIC
SBS	Chr10	10129051	T-A	Hetero	INTERGENIC
SBS	Chr10	12849262	G-A	Hetero	INTERGENIC
SBS	Chr10	14042622	G-A	Hetero	INTERGENIC
SBS	Chr10	17338789	C-T	Hetero	INTERGENIC
SBS	Chr10	19380553	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g141100
SBS	Chr11	6642315	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	7440032	A-T	Hetero	INTRON
SBS	Chr11	7642356	C-T	Hetero	INTERGENIC
SBS	Chr11	22038795	C-T	Hetero	INTERGENIC
SBS	Chr11	25135148	C-G	Hetero	INTERGENIC
SBS	Chr12	546156	T-C	Hetero	INTRON
SBS	Chr12	906128	A-G	Hetero	UTR_3_PRIME
SBS	Chr12	2513117	G-A	Hetero	INTERGENIC
SBS	Chr12	11613635	G-A	Homo	INTERGENIC
SBS	Chr12	18612502	C-A	Hetero	INTRON
SBS	Chr12	21853637	T-G	Hetero	INTERGENIC
SBS	Chr12	23357147	C-A	Hetero	INTRON
SBS	Chr12	24018905	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	537058	537065	7
Deletion	Chr4	2030977	2030984	7
Deletion	Chr12	2223258	2223273	15
Deletion	Chr2	3295507	3295533	26	OsKitaake02g048000
Deletion	Chr2	3498523	3498525	2
Deletion	Chr3	5189312	5189316	4
Deletion	Chr4	8366728	8366756	28
Deletion	Chr6	9102696	9102697	1
Deletion	Chr2	9641010	9641014	4
Deletion	Chr9	10620348	10620351	3
Deletion	Chr8	11523575	11523576	1
Deletion	Chr10	12942717	12942731	14
Deletion	Chr8	13487617	13487622	5
Deletion	Chr7	13614021	13614032	11
Deletion	Chr9	14179769	14179781	12
Deletion	Chr4	15424542	15424544	2
Deletion	Chr11	16204450	16204465	15
Deletion	Chr9	19555010	19555011	1
Deletion	Chr5	20441541	20441542	1
Deletion	Chr5	21804540	21804546	6
Deletion	Chr7	22980434	22980435	1
Deletion	Chr1	23799295	23799296	1
Deletion	Chr6	24946751	24946764	13	OsKitaake06g221800
Deletion	Chr6	25074619	25074620	1
Deletion	Chr1	25109216	25109217	1
Deletion	Chr3	25645009	25645027	18
Deletion	Chr11	26389273	26389283	10
Deletion	Chr5	26962024	26962028	4	OsKitaake05g241500
Deletion	Chr7	28142879	28142884	5
Deletion	Chr11	28584165	28584170	5
Deletion	Chr1	32614073	32614098	25
Deletion	Chr1	34683312	34683313	1
Deletion	Chr2	34858613	34858614	1	OsKitaake02g363400

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	6073307	Chr1	30915871	OsKitaake03g087100
Translocation	Chr3	6081032	Chr1	30915858	OsKitaake03g087300
Translocation	Chr10	6328194	Chr1	41408894	OsKitaake01g452100
Translocation	Chr10	6328689	Chr1	33554903

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes