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| Mutant Information |
|---|
| Mutant Name | FN2594-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2594-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 43
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11329000 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 23526850 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g225600 |
| SBS | Chr1 | 34648733 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 7300433 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 15724248 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 29222615 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 29997246 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 34824613 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 35410877 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 12599179 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 18491499 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 19850103 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 31911607 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g337200 |
| SBS | Chr4 | 5049207 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14932522 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 25179499 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 18870431 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 5417543 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 10449916 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 11022431 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 13920742 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 469349 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 25139473 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 27876986 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 5393742 | A-T | Hetero | INTRON | |
| SBS | Chr9 | 8385436 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 18173980 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 6745440 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 6785858 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 11385160 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 18272859 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18607279 | T-C | Homo | INTRON | |
| SBS | Chr11 | 167294 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9074617 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11434014 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 21266773 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 21515840 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25218760 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 8463811 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 8510849 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 10372293 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14025363 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14025364 | G-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1780001 | 1809000 | 28999 | 4 |
| Deletion | Chr12 | 6788036 | 6788050 | 14 | |
| Deletion | Chr12 | 10170096 | 10170098 | 2 | |
| Deletion | Chr9 | 12126503 | 12126504 | 1 | OsKitaake09g078400 |
| Deletion | Chr11 | 12141766 | 12141769 | 3 | |
| Deletion | Chr4 | 14497107 | 14497112 | 5 | |
| Deletion | Chr11 | 18215307 | 18215308 | 1 | |
| Deletion | Chr1 | 22725741 | 22725742 | 1 | |
| Deletion | Chr1 | 43795577 | 43795599 | 22 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 21851408 | 21851411 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 18961706 | 19083278 | |
| Inversion | Chr12 | 18961869 | 19083284 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 28708796 | Chr3 | 37184164 |