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Mutant Information

Mutant Name	FN2595-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2595-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2866707 A-G Homo SYNONYMOUS_CODING
SBS Chr1 3242011 A-T Hetero INTERGENIC
SBS Chr1 12702697 A-G Hetero INTERGENIC
SBS Chr1 13366719 G-A Hetero INTERGENIC
SBS Chr1 20223274 G-A Hetero INTRON
SBS Chr1 24116180 G-A Hetero INTERGENIC
SBS Chr1 28548389 C-T Hetero INTRON
SBS Chr1 28658521 G-A Hetero INTERGENIC
SBS Chr1 32455178 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g328550
SBS Chr1 32867982 A-G Hetero INTERGENIC
SBS Chr1 33189230 C-T Hetero INTERGENIC
SBS Chr1 38635801 T-A Homo INTERGENIC
SBS Chr2 8494062 G-A Homo INTERGENIC
SBS Chr2 11125504 A-T Homo INTERGENIC
SBS Chr2 29884971 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g302600
SBS Chr3 2530704 T-A Hetero INTRON
SBS Chr3 24762545 T-A Hetero INTERGENIC
SBS Chr3 29262653 A-G Hetero INTERGENIC
SBS Chr3 30360213 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g318500
SBS Chr5 9537853 C-A Homo INTERGENIC
SBS Chr5 15407849 C-T Hetero INTERGENIC
SBS Chr6 3547795 C-A,T Hetero INTERGENIC
SBS Chr6 6225921 C-T Hetero INTERGENIC
SBS Chr6 27615507 A-C Homo INTERGENIC
SBS Chr7 5763819 C-T Hetero UTR_3_PRIME
SBS Chr7 11317853 A-G Hetero INTERGENIC
SBS Chr8 4167429 T-C Hetero UTR_3_PRIME
SBS Chr8 5012688 G-A Hetero INTERGENIC
SBS Chr8 10175554 C-A Hetero INTERGENIC
SBS Chr8 18808662 G-A Hetero INTERGENIC
SBS Chr8 19821836 C-A Hetero INTRON
SBS Chr9 3431863 C-T Homo INTERGENIC
SBS Chr9 3438035 G-A Homo INTERGENIC
SBS Chr9 12186167 A-C Homo INTERGENIC
SBS Chr9 19864695 T-C Homo INTERGENIC
SBS Chr10 4608061 C-A Hetero INTERGENIC
SBS Chr10 19228267 G-A Hetero INTRON
SBS Chr11 1462854 G-A Hetero INTERGENIC
SBS Chr11 5337423 C-T Hetero INTERGENIC
SBS Chr11 12965584 G-C Homo INTERGENIC
SBS Chr11 20943163 G-T Hetero INTERGENIC
SBS Chr11 24086588 C-T Homo INTERGENIC
SBS Chr11 29292947 C-G Homo INTERGENIC
SBS Chr12 679071 T-C Hetero INTERGENIC
SBS Chr12 7581407 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 550653 550654 1 OsKitaake11g006500
Deletion Chr2 4710669 4710671 2
Deletion Chr3 7418234 7418235 1
Deletion Chr2 8345186 8345187 1
Deletion Chr6 9893797 9893807 10
Deletion Chr11 11102889 11102897 8
Deletion Chr5 12708390 12708399 9
Deletion Chr3 15896628 15896631 3
Deletion Chr5 20182570 20182572 2
Deletion Chr3 28689680 28689682 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 8518352 8518355 2
Insertion Chr7 13786303 13786306 2
Insertion Chr11 20351719 20351721 1
Insertion Chr11 26444217 26444220 2
Insertion Chr12 24724356 24724359 2
Insertion Chr4 2898788 2898791 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2866707	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr1	3242011	A-T	Hetero	INTERGENIC
SBS	Chr1	12702697	A-G	Hetero	INTERGENIC
SBS	Chr1	13366719	G-A	Hetero	INTERGENIC
SBS	Chr1	20223274	G-A	Hetero	INTRON
SBS	Chr1	24116180	G-A	Hetero	INTERGENIC
SBS	Chr1	28548389	C-T	Hetero	INTRON
SBS	Chr1	28658521	G-A	Hetero	INTERGENIC
SBS	Chr1	32455178	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g328550
SBS	Chr1	32867982	A-G	Hetero	INTERGENIC
SBS	Chr1	33189230	C-T	Hetero	INTERGENIC
SBS	Chr1	38635801	T-A	Homo	INTERGENIC
SBS	Chr2	8494062	G-A	Homo	INTERGENIC
SBS	Chr2	11125504	A-T	Homo	INTERGENIC
SBS	Chr2	29884971	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g302600
SBS	Chr3	2530704	T-A	Hetero	INTRON
SBS	Chr3	24762545	T-A	Hetero	INTERGENIC
SBS	Chr3	29262653	A-G	Hetero	INTERGENIC
SBS	Chr3	30360213	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g318500
SBS	Chr5	9537853	C-A	Homo	INTERGENIC
SBS	Chr5	15407849	C-T	Hetero	INTERGENIC
SBS	Chr6	3547795	C-A,T	Hetero	INTERGENIC
SBS	Chr6	6225921	C-T	Hetero	INTERGENIC
SBS	Chr6	27615507	A-C	Homo	INTERGENIC
SBS	Chr7	5763819	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	11317853	A-G	Hetero	INTERGENIC
SBS	Chr8	4167429	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	5012688	G-A	Hetero	INTERGENIC
SBS	Chr8	10175554	C-A	Hetero	INTERGENIC
SBS	Chr8	18808662	G-A	Hetero	INTERGENIC
SBS	Chr8	19821836	C-A	Hetero	INTRON
SBS	Chr9	3431863	C-T	Homo	INTERGENIC
SBS	Chr9	3438035	G-A	Homo	INTERGENIC
SBS	Chr9	12186167	A-C	Homo	INTERGENIC
SBS	Chr9	19864695	T-C	Homo	INTERGENIC
SBS	Chr10	4608061	C-A	Hetero	INTERGENIC
SBS	Chr10	19228267	G-A	Hetero	INTRON
SBS	Chr11	1462854	G-A	Hetero	INTERGENIC
SBS	Chr11	5337423	C-T	Hetero	INTERGENIC
SBS	Chr11	12965584	G-C	Homo	INTERGENIC
SBS	Chr11	20943163	G-T	Hetero	INTERGENIC
SBS	Chr11	24086588	C-T	Homo	INTERGENIC
SBS	Chr11	29292947	C-G	Homo	INTERGENIC
SBS	Chr12	679071	T-C	Hetero	INTERGENIC
SBS	Chr12	7581407	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	550653	550654	1	OsKitaake11g006500
Deletion	Chr2	4710669	4710671	2
Deletion	Chr3	7418234	7418235	1
Deletion	Chr2	8345186	8345187	1
Deletion	Chr6	9893797	9893807	10
Deletion	Chr11	11102889	11102897	8
Deletion	Chr5	12708390	12708399	9
Deletion	Chr3	15896628	15896631	3
Deletion	Chr5	20182570	20182572	2
Deletion	Chr3	28689680	28689682	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes