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Mutant Information

Mutant Name	FN2597-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2597-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 495056 C-T Hetero INTERGENIC
SBS Chr1 9553163 G-A Hetero INTERGENIC
SBS Chr1 18028747 C-T Hetero INTERGENIC
SBS Chr1 18252612 C-T Hetero INTERGENIC
SBS Chr1 24095743 A-G Hetero INTERGENIC
SBS Chr1 25708009 G-A Hetero INTRON
SBS Chr1 34975607 A-G Hetero INTERGENIC
SBS Chr1 42366272 G-A Hetero INTERGENIC
SBS Chr2 19043379 T-A Hetero INTERGENIC
SBS Chr2 27884639 A-C Hetero INTERGENIC
SBS Chr2 28373136 T-A Hetero INTERGENIC
SBS Chr2 33914284 T-G Hetero INTERGENIC
SBS Chr3 4289327 T-G Hetero INTERGENIC
SBS Chr3 6587367 G-A Homo INTERGENIC
SBS Chr3 7429832 C-A Hetero INTERGENIC
SBS Chr3 14575809 C-A Hetero INTERGENIC
SBS Chr3 20521107 G-A Hetero INTERGENIC
SBS Chr3 33870053 G-A Hetero INTERGENIC
SBS Chr4 1943433 T-C Hetero INTERGENIC
SBS Chr4 7069850 G-A Hetero INTERGENIC
SBS Chr4 16353445 C-T Hetero INTERGENIC
SBS Chr4 17043010 C-G Hetero INTERGENIC
SBS Chr4 28163250 C-T Hetero INTERGENIC
SBS Chr4 31633280 C-T Hetero INTERGENIC
SBS Chr4 33903194 C-T Hetero INTERGENIC
SBS Chr4 35982762 G-A Hetero INTERGENIC
SBS Chr5 8933286 G-A Hetero INTERGENIC
SBS Chr5 18828889 G-A Hetero INTRON
SBS Chr5 20968626 A-C Hetero INTERGENIC
SBS Chr5 22412846 G-A Hetero INTERGENIC
SBS Chr5 24523718 A-G Hetero INTERGENIC
SBS Chr5 26939889 T-A Hetero INTERGENIC
SBS Chr6 6673537 G-A Homo INTERGENIC
SBS Chr6 12494724 G-A Homo INTERGENIC
SBS Chr6 24922464 C-A Hetero INTERGENIC
SBS Chr6 28800852 T-A Hetero INTERGENIC
SBS Chr7 9156428 G-A Hetero INTERGENIC
SBS Chr7 13648629 C-T Hetero INTERGENIC
SBS Chr7 18770325 A-G Homo INTERGENIC
SBS Chr7 18770326 A-T Homo INTERGENIC
SBS Chr7 21641098 T-G Hetero INTERGENIC
SBS Chr7 27137711 G-T Hetero INTRON
SBS Chr9 4244178 C-A Hetero INTERGENIC
SBS Chr9 10913793 C-A Hetero INTERGENIC
SBS Chr9 12687224 T-C Hetero INTERGENIC
SBS Chr9 19922104 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g166000
SBS Chr9 21061654 T-C Hetero INTERGENIC
SBS Chr10 4185629 G-A Hetero INTERGENIC
SBS Chr10 4185630 G-A Hetero INTERGENIC
SBS Chr10 4266260 T-G Hetero INTERGENIC
SBS Chr10 4374360 G-C Hetero INTERGENIC
SBS Chr10 5110455 A-G Hetero INTRON
SBS Chr10 5706917 G-A Homo INTERGENIC
SBS Chr10 18445638 C-A Hetero INTERGENIC
SBS Chr10 20667662 A-G Homo INTERGENIC
SBS Chr11 3903271 C-T Hetero INTERGENIC
SBS Chr11 13067868 G-A Hetero INTERGENIC
SBS Chr11 26967548 G-T Hetero INTERGENIC
SBS Chr11 29022891 A-G Hetero INTERGENIC
SBS Chr11 29329532 C-G Hetero INTERGENIC
SBS Chr12 6708305 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g076700
SBS Chr12 6708306 G-T Hetero SYNONYMOUS_CODING
SBS Chr12 10405390 G-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 12132 12134 2
Deletion Chr7 8754083 8754088 5
Deletion Chr3 9558126 9558127 1
Deletion Chr12 11332001 11449000 116999 OsKitaake12g102301
Deletion Chr12 12467912 12467918 6
Deletion Chr12 15130519 15130520 1
Deletion Chr7 15449001 15462000 12999 3
Deletion Chr10 15621251 15621252 1
Deletion Chr5 18785001 18799000 13999 2
Deletion Chr10 20497190 20497196 6
Deletion Chr12 21308330 21308336 6
Deletion Chr9 21505331 21505347 16
Deletion Chr5 22730001 22785000 54999 10
Deletion Chr4 25595087 25595089 2
Deletion Chr7 27568667 27568673 6 OsKitaake07g256500
Deletion Chr7 28230839 28230840 1
Deletion Chr11 28587653 28587668 15
Deletion Chr5 29157419 29157423 4
Deletion Chr5 29998246 29998254 8
Deletion Chr2 35687001 35830000 142999 16

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21166023 21166027 3
Insertion Chr5 14931004 14931009 4
Insertion Chr5 19869213 19869215 1
Insertion Chr12 24769533 24769536 2
Insertion Chr3 22162358 22162360 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 11326643 11458943
Inversion Chr12 11452942 11458947

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	495056	C-T	Hetero	INTERGENIC
SBS	Chr1	9553163	G-A	Hetero	INTERGENIC
SBS	Chr1	18028747	C-T	Hetero	INTERGENIC
SBS	Chr1	18252612	C-T	Hetero	INTERGENIC
SBS	Chr1	24095743	A-G	Hetero	INTERGENIC
SBS	Chr1	25708009	G-A	Hetero	INTRON
SBS	Chr1	34975607	A-G	Hetero	INTERGENIC
SBS	Chr1	42366272	G-A	Hetero	INTERGENIC
SBS	Chr2	19043379	T-A	Hetero	INTERGENIC
SBS	Chr2	27884639	A-C	Hetero	INTERGENIC
SBS	Chr2	28373136	T-A	Hetero	INTERGENIC
SBS	Chr2	33914284	T-G	Hetero	INTERGENIC
SBS	Chr3	4289327	T-G	Hetero	INTERGENIC
SBS	Chr3	6587367	G-A	Homo	INTERGENIC
SBS	Chr3	7429832	C-A	Hetero	INTERGENIC
SBS	Chr3	14575809	C-A	Hetero	INTERGENIC
SBS	Chr3	20521107	G-A	Hetero	INTERGENIC
SBS	Chr3	33870053	G-A	Hetero	INTERGENIC
SBS	Chr4	1943433	T-C	Hetero	INTERGENIC
SBS	Chr4	7069850	G-A	Hetero	INTERGENIC
SBS	Chr4	16353445	C-T	Hetero	INTERGENIC
SBS	Chr4	17043010	C-G	Hetero	INTERGENIC
SBS	Chr4	28163250	C-T	Hetero	INTERGENIC
SBS	Chr4	31633280	C-T	Hetero	INTERGENIC
SBS	Chr4	33903194	C-T	Hetero	INTERGENIC
SBS	Chr4	35982762	G-A	Hetero	INTERGENIC
SBS	Chr5	8933286	G-A	Hetero	INTERGENIC
SBS	Chr5	18828889	G-A	Hetero	INTRON
SBS	Chr5	20968626	A-C	Hetero	INTERGENIC
SBS	Chr5	22412846	G-A	Hetero	INTERGENIC
SBS	Chr5	24523718	A-G	Hetero	INTERGENIC
SBS	Chr5	26939889	T-A	Hetero	INTERGENIC
SBS	Chr6	6673537	G-A	Homo	INTERGENIC
SBS	Chr6	12494724	G-A	Homo	INTERGENIC
SBS	Chr6	24922464	C-A	Hetero	INTERGENIC
SBS	Chr6	28800852	T-A	Hetero	INTERGENIC
SBS	Chr7	9156428	G-A	Hetero	INTERGENIC
SBS	Chr7	13648629	C-T	Hetero	INTERGENIC
SBS	Chr7	18770325	A-G	Homo	INTERGENIC
SBS	Chr7	18770326	A-T	Homo	INTERGENIC
SBS	Chr7	21641098	T-G	Hetero	INTERGENIC
SBS	Chr7	27137711	G-T	Hetero	INTRON
SBS	Chr9	4244178	C-A	Hetero	INTERGENIC
SBS	Chr9	10913793	C-A	Hetero	INTERGENIC
SBS	Chr9	12687224	T-C	Hetero	INTERGENIC
SBS	Chr9	19922104	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g166000
SBS	Chr9	21061654	T-C	Hetero	INTERGENIC
SBS	Chr10	4185629	G-A	Hetero	INTERGENIC
SBS	Chr10	4185630	G-A	Hetero	INTERGENIC
SBS	Chr10	4266260	T-G	Hetero	INTERGENIC
SBS	Chr10	4374360	G-C	Hetero	INTERGENIC
SBS	Chr10	5110455	A-G	Hetero	INTRON
SBS	Chr10	5706917	G-A	Homo	INTERGENIC
SBS	Chr10	18445638	C-A	Hetero	INTERGENIC
SBS	Chr10	20667662	A-G	Homo	INTERGENIC
SBS	Chr11	3903271	C-T	Hetero	INTERGENIC
SBS	Chr11	13067868	G-A	Hetero	INTERGENIC
SBS	Chr11	26967548	G-T	Hetero	INTERGENIC
SBS	Chr11	29022891	A-G	Hetero	INTERGENIC
SBS	Chr11	29329532	C-G	Hetero	INTERGENIC
SBS	Chr12	6708305	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g076700
SBS	Chr12	6708306	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	10405390	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	12132	12134	2
Deletion	Chr7	8754083	8754088	5
Deletion	Chr3	9558126	9558127	1
Deletion	Chr12	11332001	11449000	116999	OsKitaake12g102301
Deletion	Chr12	12467912	12467918	6
Deletion	Chr12	15130519	15130520	1
Deletion	Chr7	15449001	15462000	12999	3
Deletion	Chr10	15621251	15621252	1
Deletion	Chr5	18785001	18799000	13999	2
Deletion	Chr10	20497190	20497196	6
Deletion	Chr12	21308330	21308336	6
Deletion	Chr9	21505331	21505347	16
Deletion	Chr5	22730001	22785000	54999	10
Deletion	Chr4	25595087	25595089	2
Deletion	Chr7	27568667	27568673	6	OsKitaake07g256500
Deletion	Chr7	28230839	28230840	1
Deletion	Chr11	28587653	28587668	15
Deletion	Chr5	29157419	29157423	4
Deletion	Chr5	29998246	29998254	8
Deletion	Chr2	35687001	35830000	142999	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	11326643	11458943
Inversion	Chr12	11452942	11458947

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes