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Mutant Information

Mutant Name	FN2598-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2598-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6059140 A-T Hetero INTERGENIC
SBS Chr1 13701602 T-A Hetero INTRON
SBS Chr1 34244008 C-T Hetero INTERGENIC
SBS Chr1 34244014 T-C Hetero INTERGENIC
SBS Chr2 12713318 G-A Homo INTERGENIC
SBS Chr2 25854070 G-A Hetero INTERGENIC
SBS Chr2 26120658 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g258500
SBS Chr2 32578928 C-T Hetero INTERGENIC
SBS Chr3 20168035 G-A Hetero INTERGENIC
SBS Chr3 21653032 G-A Homo INTERGENIC
SBS Chr4 11073922 A-T Homo INTERGENIC
SBS Chr5 11145452 G-A Hetero INTERGENIC
SBS Chr6 8694088 G-T Hetero INTERGENIC
SBS Chr6 9944139 C-T Homo INTERGENIC
SBS Chr6 12811783 G-T Homo INTERGENIC
SBS Chr6 21148326 G-A Hetero UTR_3_PRIME
SBS Chr6 28938923 G-C Hetero INTERGENIC
SBS Chr7 1591037 A-G Homo INTERGENIC
SBS Chr8 27345438 C-T Homo INTRON
SBS Chr9 16823454 G-A Hetero INTERGENIC
SBS Chr9 17635518 T-G Hetero INTERGENIC
SBS Chr9 20422185 G-A Homo INTERGENIC
SBS Chr10 18860509 T-C Hetero INTERGENIC
SBS Chr11 9085212 G-A Hetero INTERGENIC
SBS Chr11 9362398 G-C Hetero INTERGENIC
SBS Chr11 20938634 A-G Hetero INTERGENIC
SBS Chr12 7739655 G-A Hetero INTERGENIC
SBS Chr12 7829580 C-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3724299 3724301 2
Deletion Chr10 4027122 4027127 5
Deletion Chr1 6915192 6915199 7
Deletion Chr1 8093215 8093224 9
Deletion Chr10 9400646 9400651 5
Deletion Chr4 11079001 11091000 11999
Deletion Chr11 12555120 12555121 1
Deletion Chr12 16919426 16919427 1
Deletion Chr7 18729001 18767000 37999 2
Deletion Chr3 23227256 23227258 2
Deletion Chr2 26737001 26763000 25999 3
Deletion Chr4 28530947 28530950 3
Deletion Chr1 41636001 41662000 25999 8

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 6594621 6594624 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 11323125 11696446
Inversion Chr2 11323142 11696444

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6059140	A-T	Hetero	INTERGENIC
SBS	Chr1	13701602	T-A	Hetero	INTRON
SBS	Chr1	34244008	C-T	Hetero	INTERGENIC
SBS	Chr1	34244014	T-C	Hetero	INTERGENIC
SBS	Chr2	12713318	G-A	Homo	INTERGENIC
SBS	Chr2	25854070	G-A	Hetero	INTERGENIC
SBS	Chr2	26120658	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g258500
SBS	Chr2	32578928	C-T	Hetero	INTERGENIC
SBS	Chr3	20168035	G-A	Hetero	INTERGENIC
SBS	Chr3	21653032	G-A	Homo	INTERGENIC
SBS	Chr4	11073922	A-T	Homo	INTERGENIC
SBS	Chr5	11145452	G-A	Hetero	INTERGENIC
SBS	Chr6	8694088	G-T	Hetero	INTERGENIC
SBS	Chr6	9944139	C-T	Homo	INTERGENIC
SBS	Chr6	12811783	G-T	Homo	INTERGENIC
SBS	Chr6	21148326	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	28938923	G-C	Hetero	INTERGENIC
SBS	Chr7	1591037	A-G	Homo	INTERGENIC
SBS	Chr8	27345438	C-T	Homo	INTRON
SBS	Chr9	16823454	G-A	Hetero	INTERGENIC
SBS	Chr9	17635518	T-G	Hetero	INTERGENIC
SBS	Chr9	20422185	G-A	Homo	INTERGENIC
SBS	Chr10	18860509	T-C	Hetero	INTERGENIC
SBS	Chr11	9085212	G-A	Hetero	INTERGENIC
SBS	Chr11	9362398	G-C	Hetero	INTERGENIC
SBS	Chr11	20938634	A-G	Hetero	INTERGENIC
SBS	Chr12	7739655	G-A	Hetero	INTERGENIC
SBS	Chr12	7829580	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3724299	3724301	2
Deletion	Chr10	4027122	4027127	5
Deletion	Chr1	6915192	6915199	7
Deletion	Chr1	8093215	8093224	9
Deletion	Chr10	9400646	9400651	5
Deletion	Chr4	11079001	11091000	11999
Deletion	Chr11	12555120	12555121	1
Deletion	Chr12	16919426	16919427	1
Deletion	Chr7	18729001	18767000	37999	2
Deletion	Chr3	23227256	23227258	2
Deletion	Chr2	26737001	26763000	25999	3
Deletion	Chr4	28530947	28530950	3
Deletion	Chr1	41636001	41662000	25999	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	11323125	11696446
Inversion	Chr2	11323142	11696444

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes