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Mutant Information

Mutant Name	FN2599-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2599-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5910484 G-A Hetero INTERGENIC
SBS Chr1 20550312 A-G Hetero INTERGENIC
SBS Chr1 27425388 T-C Hetero SYNONYMOUS_CODING
SBS Chr2 3006299 G-C Hetero INTERGENIC
SBS Chr2 6147434 A-T Hetero INTERGENIC
SBS Chr2 14777004 C-A Hetero INTERGENIC
SBS Chr2 25709222 T-C Hetero INTERGENIC
SBS Chr3 5597055 A-C Homo INTRON
SBS Chr3 19992598 C-T Hetero INTERGENIC
SBS Chr3 23886685 A-G Homo INTERGENIC
SBS Chr3 24088505 C-T Hetero INTERGENIC
SBS Chr3 32630749 C-A Hetero INTERGENIC
SBS Chr3 34656017 A-T Hetero INTERGENIC
SBS Chr4 1468035 T-C Hetero INTERGENIC
SBS Chr4 10086384 C-G Hetero INTRON
SBS Chr4 12655029 G-A Hetero INTERGENIC
SBS Chr4 23581634 C-T Hetero INTERGENIC
SBS Chr5 11843074 G-A Hetero INTERGENIC
SBS Chr5 27376615 G-A Hetero INTERGENIC
SBS Chr5 30172137 C-T Hetero INTERGENIC
SBS Chr6 3350657 G-A Homo INTRON
SBS Chr6 15593794 C-A Hetero INTERGENIC
SBS Chr6 24834537 T-G Homo NON_SYNONYMOUS_CODING OsKitaake06g220700
SBS Chr6 29186036 T-C Hetero UTR_5_PRIME
SBS Chr7 3911466 C-T Homo INTERGENIC
SBS Chr7 8837190 G-A Hetero INTERGENIC
SBS Chr7 8997917 T-C Homo INTERGENIC
SBS Chr7 9128783 G-T Hetero INTERGENIC
SBS Chr7 28502919 C-T Hetero INTERGENIC
SBS Chr8 1375366 C-A Hetero INTERGENIC
SBS Chr9 4893026 T-C Hetero INTRON
SBS Chr9 5438889 G-A Hetero INTERGENIC
SBS Chr9 7990679 A-G Hetero INTRON
SBS Chr9 13311838 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g088500
SBS Chr10 3221813 C-T Homo INTERGENIC
SBS Chr10 17731623 C-A Hetero INTRON
SBS Chr11 8789644 C-G Hetero INTERGENIC
SBS Chr11 14354877 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g120100
SBS Chr11 22565818 C-T Hetero INTERGENIC
SBS Chr11 27341914 C-T Hetero INTERGENIC
SBS Chr12 10910707 C-T Hetero INTERGENIC
SBS Chr12 18391570 C-G Homo INTERGENIC
SBS Chr12 18882875 T-C Hetero INTERGENIC
SBS Chr12 24668582 A-G Hetero INTRON

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 957726 957731 5
Deletion Chr6 1489111 1489117 6
Deletion Chr4 4059688 4059696 8 OsKitaake04g019900
Deletion Chr1 4537036 4537041 5 OsKitaake01g060700
Deletion Chr12 4873256 4873271 15
Deletion Chr10 5174649 5174663 14
Deletion Chr3 5300769 5300770 1
Deletion Chr7 6902263 6902265 2
Deletion Chr5 7381847 7381860 13
Deletion Chr9 7457087 7457100 13
Deletion Chr3 8055998 8056001 3
Deletion Chr8 10709283 10709285 2
Deletion Chr12 12744855 12744856 1
Deletion Chr10 12834913 12834915 2
Deletion Chr5 14035249 14035267 18
Deletion Chr9 18977151 18977167 16
Deletion Chr10 22452530 22452531 1
Deletion Chr7 28354161 28354169 8
Deletion Chr3 34560118 34560132 14
Deletion Chr2 36352754 36352759 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4607924 4607928 3
Insertion Chr6 5352474 5352491 16

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 8255497 8533048
Inversion Chr3 8255500 8533053

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 903404 Chr1 42764127 2
Translocation Chr8 910100 Chr1 42764138 OsKitaake01g471200
Translocation Chr8 11276502 Chr1 3722887 OsKitaake01g049600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5910484	G-A	Hetero	INTERGENIC
SBS	Chr1	20550312	A-G	Hetero	INTERGENIC
SBS	Chr1	27425388	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	3006299	G-C	Hetero	INTERGENIC
SBS	Chr2	6147434	A-T	Hetero	INTERGENIC
SBS	Chr2	14777004	C-A	Hetero	INTERGENIC
SBS	Chr2	25709222	T-C	Hetero	INTERGENIC
SBS	Chr3	5597055	A-C	Homo	INTRON
SBS	Chr3	19992598	C-T	Hetero	INTERGENIC
SBS	Chr3	23886685	A-G	Homo	INTERGENIC
SBS	Chr3	24088505	C-T	Hetero	INTERGENIC
SBS	Chr3	32630749	C-A	Hetero	INTERGENIC
SBS	Chr3	34656017	A-T	Hetero	INTERGENIC
SBS	Chr4	1468035	T-C	Hetero	INTERGENIC
SBS	Chr4	10086384	C-G	Hetero	INTRON
SBS	Chr4	12655029	G-A	Hetero	INTERGENIC
SBS	Chr4	23581634	C-T	Hetero	INTERGENIC
SBS	Chr5	11843074	G-A	Hetero	INTERGENIC
SBS	Chr5	27376615	G-A	Hetero	INTERGENIC
SBS	Chr5	30172137	C-T	Hetero	INTERGENIC
SBS	Chr6	3350657	G-A	Homo	INTRON
SBS	Chr6	15593794	C-A	Hetero	INTERGENIC
SBS	Chr6	24834537	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g220700
SBS	Chr6	29186036	T-C	Hetero	UTR_5_PRIME
SBS	Chr7	3911466	C-T	Homo	INTERGENIC
SBS	Chr7	8837190	G-A	Hetero	INTERGENIC
SBS	Chr7	8997917	T-C	Homo	INTERGENIC
SBS	Chr7	9128783	G-T	Hetero	INTERGENIC
SBS	Chr7	28502919	C-T	Hetero	INTERGENIC
SBS	Chr8	1375366	C-A	Hetero	INTERGENIC
SBS	Chr9	4893026	T-C	Hetero	INTRON
SBS	Chr9	5438889	G-A	Hetero	INTERGENIC
SBS	Chr9	7990679	A-G	Hetero	INTRON
SBS	Chr9	13311838	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g088500
SBS	Chr10	3221813	C-T	Homo	INTERGENIC
SBS	Chr10	17731623	C-A	Hetero	INTRON
SBS	Chr11	8789644	C-G	Hetero	INTERGENIC
SBS	Chr11	14354877	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g120100
SBS	Chr11	22565818	C-T	Hetero	INTERGENIC
SBS	Chr11	27341914	C-T	Hetero	INTERGENIC
SBS	Chr12	10910707	C-T	Hetero	INTERGENIC
SBS	Chr12	18391570	C-G	Homo	INTERGENIC
SBS	Chr12	18882875	T-C	Hetero	INTERGENIC
SBS	Chr12	24668582	A-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	957726	957731	5
Deletion	Chr6	1489111	1489117	6
Deletion	Chr4	4059688	4059696	8	OsKitaake04g019900
Deletion	Chr1	4537036	4537041	5	OsKitaake01g060700
Deletion	Chr12	4873256	4873271	15
Deletion	Chr10	5174649	5174663	14
Deletion	Chr3	5300769	5300770	1
Deletion	Chr7	6902263	6902265	2
Deletion	Chr5	7381847	7381860	13
Deletion	Chr9	7457087	7457100	13
Deletion	Chr3	8055998	8056001	3
Deletion	Chr8	10709283	10709285	2
Deletion	Chr12	12744855	12744856	1
Deletion	Chr10	12834913	12834915	2
Deletion	Chr5	14035249	14035267	18
Deletion	Chr9	18977151	18977167	16
Deletion	Chr10	22452530	22452531	1
Deletion	Chr7	28354161	28354169	8
Deletion	Chr3	34560118	34560132	14
Deletion	Chr2	36352754	36352759	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8255497	8533048
Inversion	Chr3	8255500	8533053

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes