Search Kitaake

Mutant Information

Mutant Name	FN2600-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2600-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9606887 G-A Hetero INTERGENIC
SBS Chr1 17334281 C-T Hetero INTERGENIC
SBS Chr2 4155063 A-G Hetero INTERGENIC
SBS Chr2 18161856 C-T Hetero INTERGENIC
SBS Chr2 19346484 A-G Hetero INTRON
SBS Chr2 21309718 T-A Hetero UTR_3_PRIME
SBS Chr2 25778186 C-T Hetero INTERGENIC
SBS Chr2 26193357 C-T Hetero STOP_GAINED OsKitaake02g259800
SBS Chr2 36904259 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g395100
SBS Chr3 3769804 T-G Hetero INTRON
SBS Chr3 8014148 G-T Homo UTR_3_PRIME
SBS Chr3 14346348 G-T Hetero INTERGENIC
SBS Chr3 14845966 G-A Homo INTERGENIC
SBS Chr3 16530158 T-C Hetero INTERGENIC
SBS Chr3 16917310 G-A Hetero INTRON
SBS Chr3 26484847 C-T Homo SYNONYMOUS_CODING
SBS Chr4 682312 G-T Homo INTERGENIC
SBS Chr4 9165725 C-T Homo INTERGENIC
SBS Chr4 11135859 T-A Hetero INTERGENIC
SBS Chr4 12228714 A-T Hetero INTERGENIC
SBS Chr4 14317878 C-T Hetero INTERGENIC
SBS Chr4 25165636 G-C Hetero INTERGENIC
SBS Chr4 25613445 A-G Homo INTERGENIC
SBS Chr4 28021331 G-T Hetero INTERGENIC
SBS Chr5 212048 T-G Hetero INTRON
SBS Chr5 212049 A-C Hetero INTRON
SBS Chr5 2022895 A-G Hetero INTRON
SBS Chr5 7747293 C-G Hetero INTERGENIC
SBS Chr5 21210071 C-A Hetero INTERGENIC
SBS Chr5 28275951 T-C Hetero UTR_3_PRIME
SBS Chr6 2001909 A-C Hetero INTERGENIC
SBS Chr6 2495519 T-A Hetero INTERGENIC
SBS Chr6 2926354 C-G Hetero INTERGENIC
SBS Chr6 4101778 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g057500
SBS Chr6 10875945 G-A Hetero INTERGENIC
SBS Chr6 14227512 C-A Hetero INTERGENIC
SBS Chr6 14722866 C-A Hetero INTERGENIC
SBS Chr6 18697881 A-G Hetero INTERGENIC
SBS Chr7 9600966 C-T Hetero INTERGENIC
SBS Chr7 19819800 T-C Hetero INTERGENIC
SBS Chr7 24784180 C-T Hetero INTERGENIC
SBS Chr7 27235034 G-A Homo INTERGENIC
SBS Chr8 1008926 G-T Hetero INTERGENIC
SBS Chr8 1303613 G-A Hetero INTERGENIC
SBS Chr8 2316900 C-T Hetero INTERGENIC
SBS Chr8 16100985 T-A Hetero INTERGENIC
SBS Chr8 16100986 A-T Hetero INTERGENIC
SBS Chr8 17195283 T-A Hetero INTERGENIC
SBS Chr8 18873681 G-C Hetero INTRON
SBS Chr8 20476519 G-A Hetero INTERGENIC
SBS Chr8 21623389 C-A Hetero INTRON
SBS Chr8 24785577 G-C Hetero INTERGENIC
SBS Chr8 26138316 G-A Hetero INTERGENIC
SBS Chr9 12774531 C-A Hetero INTERGENIC
SBS Chr11 30214 G-T Hetero UTR_5_PRIME
SBS Chr11 3125860 G-T Hetero INTERGENIC
SBS Chr11 5676626 C-T Hetero INTERGENIC
SBS Chr11 5771177 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g070700
SBS Chr12 3361341 G-A Hetero INTERGENIC
SBS Chr12 8629566 C-T Hetero INTERGENIC
SBS Chr12 9440686 C-A Homo INTERGENIC
SBS Chr12 11147453 T-C Hetero INTERGENIC
SBS Chr12 23895227 C-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 381262 381273 11
Deletion Chr4 1337951 1337952 1
Deletion Chr6 1470886 1470888 2
Deletion Chr11 6416001 6768000 351999 33
Deletion Chr2 6634397 6634404 7
Deletion Chr11 6775001 6832000 56999 OsKitaake11g079855
Deletion Chr11 7137989 7137991 2
Deletion Chr8 12322776 12322777 1
Deletion Chr2 14788001 14817000 28999 OsKitaake02g157400
Deletion Chr3 16074596 16074598 2
Deletion Chr12 18942512 18942518 6
Deletion Chr2 20736990 20737000 10
Deletion Chr1 21336020 21336021 1
Deletion Chr6 26470463 26470467 4
Deletion Chr4 28275136 28275143 7
Deletion Chr3 32574941 32574945 4 OsKitaake03g344700
Deletion Chr1 43896482 43896484 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 2142010 2142013 2
Insertion Chr2 36737154 36737157 2
Insertion Chr9 9759174 9759177 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 20537356 20580778
Inversion Chr8 21208088 21323819
Inversion Chr8 21208113 21323827

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8392970 Chr8 16387339
Translocation Chr12 20537357 Chr5 26452022 OsKitaake05g234500
Translocation Chr8 23356055 Chr6 18770088 OsKitaake08g180000
Translocation Chr8 23356058 Chr6 18769920 OsKitaake08g180000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9606887	G-A	Hetero	INTERGENIC
SBS	Chr1	17334281	C-T	Hetero	INTERGENIC
SBS	Chr2	4155063	A-G	Hetero	INTERGENIC
SBS	Chr2	18161856	C-T	Hetero	INTERGENIC
SBS	Chr2	19346484	A-G	Hetero	INTRON
SBS	Chr2	21309718	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	25778186	C-T	Hetero	INTERGENIC
SBS	Chr2	26193357	C-T	Hetero	STOP_GAINED	OsKitaake02g259800
SBS	Chr2	36904259	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g395100
SBS	Chr3	3769804	T-G	Hetero	INTRON
SBS	Chr3	8014148	G-T	Homo	UTR_3_PRIME
SBS	Chr3	14346348	G-T	Hetero	INTERGENIC
SBS	Chr3	14845966	G-A	Homo	INTERGENIC
SBS	Chr3	16530158	T-C	Hetero	INTERGENIC
SBS	Chr3	16917310	G-A	Hetero	INTRON
SBS	Chr3	26484847	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	682312	G-T	Homo	INTERGENIC
SBS	Chr4	9165725	C-T	Homo	INTERGENIC
SBS	Chr4	11135859	T-A	Hetero	INTERGENIC
SBS	Chr4	12228714	A-T	Hetero	INTERGENIC
SBS	Chr4	14317878	C-T	Hetero	INTERGENIC
SBS	Chr4	25165636	G-C	Hetero	INTERGENIC
SBS	Chr4	25613445	A-G	Homo	INTERGENIC
SBS	Chr4	28021331	G-T	Hetero	INTERGENIC
SBS	Chr5	212048	T-G	Hetero	INTRON
SBS	Chr5	212049	A-C	Hetero	INTRON
SBS	Chr5	2022895	A-G	Hetero	INTRON
SBS	Chr5	7747293	C-G	Hetero	INTERGENIC
SBS	Chr5	21210071	C-A	Hetero	INTERGENIC
SBS	Chr5	28275951	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	2001909	A-C	Hetero	INTERGENIC
SBS	Chr6	2495519	T-A	Hetero	INTERGENIC
SBS	Chr6	2926354	C-G	Hetero	INTERGENIC
SBS	Chr6	4101778	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g057500
SBS	Chr6	10875945	G-A	Hetero	INTERGENIC
SBS	Chr6	14227512	C-A	Hetero	INTERGENIC
SBS	Chr6	14722866	C-A	Hetero	INTERGENIC
SBS	Chr6	18697881	A-G	Hetero	INTERGENIC
SBS	Chr7	9600966	C-T	Hetero	INTERGENIC
SBS	Chr7	19819800	T-C	Hetero	INTERGENIC
SBS	Chr7	24784180	C-T	Hetero	INTERGENIC
SBS	Chr7	27235034	G-A	Homo	INTERGENIC
SBS	Chr8	1008926	G-T	Hetero	INTERGENIC
SBS	Chr8	1303613	G-A	Hetero	INTERGENIC
SBS	Chr8	2316900	C-T	Hetero	INTERGENIC
SBS	Chr8	16100985	T-A	Hetero	INTERGENIC
SBS	Chr8	16100986	A-T	Hetero	INTERGENIC
SBS	Chr8	17195283	T-A	Hetero	INTERGENIC
SBS	Chr8	18873681	G-C	Hetero	INTRON
SBS	Chr8	20476519	G-A	Hetero	INTERGENIC
SBS	Chr8	21623389	C-A	Hetero	INTRON
SBS	Chr8	24785577	G-C	Hetero	INTERGENIC
SBS	Chr8	26138316	G-A	Hetero	INTERGENIC
SBS	Chr9	12774531	C-A	Hetero	INTERGENIC
SBS	Chr11	30214	G-T	Hetero	UTR_5_PRIME
SBS	Chr11	3125860	G-T	Hetero	INTERGENIC
SBS	Chr11	5676626	C-T	Hetero	INTERGENIC
SBS	Chr11	5771177	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g070700
SBS	Chr12	3361341	G-A	Hetero	INTERGENIC
SBS	Chr12	8629566	C-T	Hetero	INTERGENIC
SBS	Chr12	9440686	C-A	Homo	INTERGENIC
SBS	Chr12	11147453	T-C	Hetero	INTERGENIC
SBS	Chr12	23895227	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	381262	381273	11
Deletion	Chr4	1337951	1337952	1
Deletion	Chr6	1470886	1470888	2
Deletion	Chr11	6416001	6768000	351999	33
Deletion	Chr2	6634397	6634404	7
Deletion	Chr11	6775001	6832000	56999	OsKitaake11g079855
Deletion	Chr11	7137989	7137991	2
Deletion	Chr8	12322776	12322777	1
Deletion	Chr2	14788001	14817000	28999	OsKitaake02g157400
Deletion	Chr3	16074596	16074598	2
Deletion	Chr12	18942512	18942518	6
Deletion	Chr2	20736990	20737000	10
Deletion	Chr1	21336020	21336021	1
Deletion	Chr6	26470463	26470467	4
Deletion	Chr4	28275136	28275143	7
Deletion	Chr3	32574941	32574945	4	OsKitaake03g344700
Deletion	Chr1	43896482	43896484	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	20537356	20580778
Inversion	Chr8	21208088	21323819
Inversion	Chr8	21208113	21323827

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes