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Mutant Information

Mutant Name	FN2602-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2602-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8000864 C-T Hetero INTERGENIC
SBS Chr1 19991783 G-A Hetero INTERGENIC
SBS Chr1 20379595 C-T Hetero INTERGENIC
SBS Chr1 39160626 G-A Hetero INTERGENIC
SBS Chr2 3473368 A-G Hetero INTERGENIC
SBS Chr2 12589786 C-T Hetero INTERGENIC
SBS Chr2 13006239 C-G Hetero INTERGENIC
SBS Chr2 24539178 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g243700
SBS Chr2 25596255 T-G Homo INTERGENIC
SBS Chr2 32200200 G-A Hetero INTERGENIC
SBS Chr2 35712694 G-T Hetero INTERGENIC
SBS Chr3 3129011 T-A Hetero INTERGENIC
SBS Chr3 9702328 C-A Homo INTERGENIC
SBS Chr3 12893202 A-G Homo INTERGENIC
SBS Chr3 14052914 C-T Hetero INTRON
SBS Chr3 15085393 G-T Hetero INTRON
SBS Chr3 18744374 T-G Homo INTERGENIC
SBS Chr3 27569502 T-G Hetero INTERGENIC
SBS Chr3 27796515 T-A Hetero INTERGENIC
SBS Chr3 32633201 C-A Hetero INTERGENIC
SBS Chr4 2998716 C-T Hetero INTERGENIC
SBS Chr4 8433987 A-G Hetero INTERGENIC
SBS Chr4 24818310 C-T Homo INTERGENIC
SBS Chr4 28069422 A-T Hetero INTERGENIC
SBS Chr4 35232791 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g297100
SBS Chr4 35232792 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g297100
SBS Chr4 36105790 G-T Hetero INTERGENIC
SBS Chr4 36105791 A-T Hetero INTERGENIC
SBS Chr5 9108221 C-T Hetero INTERGENIC
SBS Chr5 12978162 C-T Homo INTERGENIC
SBS Chr5 14093673 A-G Homo INTERGENIC
SBS Chr5 15463953 T-C Homo INTERGENIC
SBS Chr5 29738382 T-A Hetero INTERGENIC
SBS Chr6 19534330 G-A Hetero INTERGENIC
SBS Chr6 20232300 C-T Hetero INTERGENIC
SBS Chr6 25073392 C-A Hetero INTERGENIC
SBS Chr6 27400633 A-T Hetero INTERGENIC
SBS Chr6 28708359 G-C Homo INTRON
SBS Chr7 2834958 T-C Hetero INTERGENIC
SBS Chr7 13750908 G-T Hetero INTERGENIC
SBS Chr7 21679255 C-T Hetero INTERGENIC
SBS Chr8 11895083 C-T Hetero INTERGENIC
SBS Chr8 12401186 G-A Hetero INTERGENIC
SBS Chr8 13405165 C-G Hetero INTERGENIC
SBS Chr8 16174322 T-G Hetero INTERGENIC
SBS Chr8 16438663 G-A Hetero INTERGENIC
SBS Chr8 18950766 C-T Hetero INTRON
SBS Chr8 19843327 G-A Hetero INTERGENIC
SBS Chr8 23669902 G-C Homo NON_SYNONYMOUS_CODING OsKitaake08g182400
SBS Chr9 949987 A-T Hetero INTERGENIC
SBS Chr10 2199990 A-C Homo INTERGENIC
SBS Chr10 16288687 G-A Hetero INTERGENIC
SBS Chr10 16953230 T-G Hetero INTERGENIC
SBS Chr11 10559424 C-T Homo INTRON
SBS Chr11 11317064 G-A Hetero INTERGENIC
SBS Chr11 15042288 G-T Hetero SYNONYMOUS_CODING
SBS Chr11 16700912 C-A Hetero INTERGENIC
SBS Chr11 16700913 G-T Hetero INTERGENIC
SBS Chr11 18820486 C-T Hetero INTERGENIC
SBS Chr11 20371370 G-C Homo INTERGENIC
SBS Chr12 2608047 G-A Hetero INTERGENIC
SBS Chr12 9932045 T-G Hetero INTERGENIC
SBS Chr12 14627296 G-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3179565 3179566 1
Deletion Chr4 18287935 18287937 2
Deletion Chr9 19265882 19265891 9
Deletion Chr8 21395712 21395720 8
Deletion Chr5 25673001 25681000 7999 OsKitaake05g225300
Deletion Chr4 30384001 30558000 173999 18
Deletion Chr4 30561001 30775000 213999 26
Deletion Chr4 33349319 33349322 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 26310606 26310609 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 27826662 27855473 2
Inversion Chr1 27827438 27855504 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 19632357 Chr5 25681227
Translocation Chr9 19632361 Chr5 25682428
Translocation Chr11 22767525 Chr6 18124631

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8000864	C-T	Hetero	INTERGENIC
SBS	Chr1	19991783	G-A	Hetero	INTERGENIC
SBS	Chr1	20379595	C-T	Hetero	INTERGENIC
SBS	Chr1	39160626	G-A	Hetero	INTERGENIC
SBS	Chr2	3473368	A-G	Hetero	INTERGENIC
SBS	Chr2	12589786	C-T	Hetero	INTERGENIC
SBS	Chr2	13006239	C-G	Hetero	INTERGENIC
SBS	Chr2	24539178	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g243700
SBS	Chr2	25596255	T-G	Homo	INTERGENIC
SBS	Chr2	32200200	G-A	Hetero	INTERGENIC
SBS	Chr2	35712694	G-T	Hetero	INTERGENIC
SBS	Chr3	3129011	T-A	Hetero	INTERGENIC
SBS	Chr3	9702328	C-A	Homo	INTERGENIC
SBS	Chr3	12893202	A-G	Homo	INTERGENIC
SBS	Chr3	14052914	C-T	Hetero	INTRON
SBS	Chr3	15085393	G-T	Hetero	INTRON
SBS	Chr3	18744374	T-G	Homo	INTERGENIC
SBS	Chr3	27569502	T-G	Hetero	INTERGENIC
SBS	Chr3	27796515	T-A	Hetero	INTERGENIC
SBS	Chr3	32633201	C-A	Hetero	INTERGENIC
SBS	Chr4	2998716	C-T	Hetero	INTERGENIC
SBS	Chr4	8433987	A-G	Hetero	INTERGENIC
SBS	Chr4	24818310	C-T	Homo	INTERGENIC
SBS	Chr4	28069422	A-T	Hetero	INTERGENIC
SBS	Chr4	35232791	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g297100
SBS	Chr4	35232792	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g297100
SBS	Chr4	36105790	G-T	Hetero	INTERGENIC
SBS	Chr4	36105791	A-T	Hetero	INTERGENIC
SBS	Chr5	9108221	C-T	Hetero	INTERGENIC
SBS	Chr5	12978162	C-T	Homo	INTERGENIC
SBS	Chr5	14093673	A-G	Homo	INTERGENIC
SBS	Chr5	15463953	T-C	Homo	INTERGENIC
SBS	Chr5	29738382	T-A	Hetero	INTERGENIC
SBS	Chr6	19534330	G-A	Hetero	INTERGENIC
SBS	Chr6	20232300	C-T	Hetero	INTERGENIC
SBS	Chr6	25073392	C-A	Hetero	INTERGENIC
SBS	Chr6	27400633	A-T	Hetero	INTERGENIC
SBS	Chr6	28708359	G-C	Homo	INTRON
SBS	Chr7	2834958	T-C	Hetero	INTERGENIC
SBS	Chr7	13750908	G-T	Hetero	INTERGENIC
SBS	Chr7	21679255	C-T	Hetero	INTERGENIC
SBS	Chr8	11895083	C-T	Hetero	INTERGENIC
SBS	Chr8	12401186	G-A	Hetero	INTERGENIC
SBS	Chr8	13405165	C-G	Hetero	INTERGENIC
SBS	Chr8	16174322	T-G	Hetero	INTERGENIC
SBS	Chr8	16438663	G-A	Hetero	INTERGENIC
SBS	Chr8	18950766	C-T	Hetero	INTRON
SBS	Chr8	19843327	G-A	Hetero	INTERGENIC
SBS	Chr8	23669902	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g182400
SBS	Chr9	949987	A-T	Hetero	INTERGENIC
SBS	Chr10	2199990	A-C	Homo	INTERGENIC
SBS	Chr10	16288687	G-A	Hetero	INTERGENIC
SBS	Chr10	16953230	T-G	Hetero	INTERGENIC
SBS	Chr11	10559424	C-T	Homo	INTRON
SBS	Chr11	11317064	G-A	Hetero	INTERGENIC
SBS	Chr11	15042288	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	16700912	C-A	Hetero	INTERGENIC
SBS	Chr11	16700913	G-T	Hetero	INTERGENIC
SBS	Chr11	18820486	C-T	Hetero	INTERGENIC
SBS	Chr11	20371370	G-C	Homo	INTERGENIC
SBS	Chr12	2608047	G-A	Hetero	INTERGENIC
SBS	Chr12	9932045	T-G	Hetero	INTERGENIC
SBS	Chr12	14627296	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3179565	3179566	1
Deletion	Chr4	18287935	18287937	2
Deletion	Chr9	19265882	19265891	9
Deletion	Chr8	21395712	21395720	8
Deletion	Chr5	25673001	25681000	7999	OsKitaake05g225300
Deletion	Chr4	30384001	30558000	173999	18
Deletion	Chr4	30561001	30775000	213999	26
Deletion	Chr4	33349319	33349322	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	27826662	27855473	2
Inversion	Chr1	27827438	27855504	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes