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Mutant Information

Mutant Name	FN2606-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2606-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8849802 A-C Hetero INTRON
SBS Chr1 26388803 T-A Homo INTERGENIC
SBS Chr2 3700452 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g053500
SBS Chr2 4616765 T-G Homo INTERGENIC
SBS Chr2 15243721 C-A Hetero INTERGENIC
SBS Chr2 17743838 G-A Hetero INTERGENIC
SBS Chr2 25938595 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g255800
SBS Chr2 29008616 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 31437678 G-T Homo INTERGENIC
SBS Chr3 1540042 G-C Hetero INTERGENIC
SBS Chr3 12008669 C-A Hetero INTRON
SBS Chr3 33265589 T-C Hetero INTERGENIC
SBS Chr4 3667993 T-C Hetero INTERGENIC
SBS Chr4 31450792 G-A Hetero INTERGENIC
SBS Chr5 5546089 C-T Hetero INTERGENIC
SBS Chr5 30176437 C-G Hetero INTERGENIC
SBS Chr6 12143442 G-T Hetero INTERGENIC
SBS Chr6 14655881 G-A Hetero INTERGENIC
SBS Chr6 16123737 A-T Hetero INTERGENIC
SBS Chr6 17090969 G-C Hetero INTERGENIC
SBS Chr7 11953646 T-C Hetero INTERGENIC
SBS Chr7 17267907 A-C Hetero SPLICE_SITE_REGION
SBS Chr7 18138862 T-C Hetero INTERGENIC
SBS Chr7 22242695 T-A Homo INTERGENIC
SBS Chr8 16439541 G-T Hetero INTERGENIC
SBS Chr8 26381703 C-T Hetero INTERGENIC
SBS Chr9 355868 G-A Hetero INTERGENIC
SBS Chr9 9231581 G-A Hetero INTERGENIC
SBS Chr11 13780111 C-T Hetero INTERGENIC
SBS Chr12 3944864 G-A Hetero INTRON
SBS Chr12 20074710 G-C Hetero UTR_5_PRIME
SBS Chr12 22456453 G-A Hetero INTERGENIC
SBS Chr12 23082260 G-A Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 4089589 4089590 1
Deletion Chr11 5781418 5781419 1
Deletion Chr12 7267001 7324000 56999 2
Deletion Chr8 12374773 12374774 1
Deletion Chr2 13826557 13826875 318
Deletion Chr12 14229925 14229942 17

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 2789826 2789832 5
Insertion Chr5 30226856 30226864 7
Insertion Chr11 12505222 12505226 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 28845464 28997225 OsKitaake08g248800
Inversion Chr8 28845472 28997229 OsKitaake08g248800
Inversion Chr4 35341278 36062266 2
Inversion Chr4 35341282 36062293 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10428960 Chr3 9118381
Translocation Chr9 19377257 Chr8 15834953 OsKitaake09g157500
Translocation Chr11 21324781 Chr8 11590433 OsKitaake11g168700
Translocation Chr10 21404807 Chr7 5280952 OsKitaake10g169400
Translocation Chr12 26382295 Chr11 28198426

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8849802	A-C	Hetero	INTRON
SBS	Chr1	26388803	T-A	Homo	INTERGENIC
SBS	Chr2	3700452	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g053500
SBS	Chr2	4616765	T-G	Homo	INTERGENIC
SBS	Chr2	15243721	C-A	Hetero	INTERGENIC
SBS	Chr2	17743838	G-A	Hetero	INTERGENIC
SBS	Chr2	25938595	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g255800
SBS	Chr2	29008616	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	31437678	G-T	Homo	INTERGENIC
SBS	Chr3	1540042	G-C	Hetero	INTERGENIC
SBS	Chr3	12008669	C-A	Hetero	INTRON
SBS	Chr3	33265589	T-C	Hetero	INTERGENIC
SBS	Chr4	3667993	T-C	Hetero	INTERGENIC
SBS	Chr4	31450792	G-A	Hetero	INTERGENIC
SBS	Chr5	5546089	C-T	Hetero	INTERGENIC
SBS	Chr5	30176437	C-G	Hetero	INTERGENIC
SBS	Chr6	12143442	G-T	Hetero	INTERGENIC
SBS	Chr6	14655881	G-A	Hetero	INTERGENIC
SBS	Chr6	16123737	A-T	Hetero	INTERGENIC
SBS	Chr6	17090969	G-C	Hetero	INTERGENIC
SBS	Chr7	11953646	T-C	Hetero	INTERGENIC
SBS	Chr7	17267907	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr7	18138862	T-C	Hetero	INTERGENIC
SBS	Chr7	22242695	T-A	Homo	INTERGENIC
SBS	Chr8	16439541	G-T	Hetero	INTERGENIC
SBS	Chr8	26381703	C-T	Hetero	INTERGENIC
SBS	Chr9	355868	G-A	Hetero	INTERGENIC
SBS	Chr9	9231581	G-A	Hetero	INTERGENIC
SBS	Chr11	13780111	C-T	Hetero	INTERGENIC
SBS	Chr12	3944864	G-A	Hetero	INTRON
SBS	Chr12	20074710	G-C	Hetero	UTR_5_PRIME
SBS	Chr12	22456453	G-A	Hetero	INTERGENIC
SBS	Chr12	23082260	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	4089589	4089590	1
Deletion	Chr11	5781418	5781419	1
Deletion	Chr12	7267001	7324000	56999	2
Deletion	Chr8	12374773	12374774	1
Deletion	Chr2	13826557	13826875	318
Deletion	Chr12	14229925	14229942	17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	28845464	28997225	OsKitaake08g248800
Inversion	Chr8	28845472	28997229	OsKitaake08g248800
Inversion	Chr4	35341278	36062266	2
Inversion	Chr4	35341282	36062293	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes