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Mutant Information

Mutant Name	FN2607-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2607-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5243966 C-T Hetero INTERGENIC
SBS Chr1 15857858 A-T Hetero INTERGENIC
SBS Chr1 17440752 C-G Hetero INTERGENIC
SBS Chr1 40616780 C-A Hetero INTERGENIC
SBS Chr2 3472710 G-A Homo INTERGENIC
SBS Chr2 30415943 T-G Homo INTERGENIC
SBS Chr3 22192696 A-T Hetero INTERGENIC
SBS Chr3 26667094 A-G Hetero INTERGENIC
SBS Chr3 30490900 T-C Hetero UTR_3_PRIME
SBS Chr3 30588847 G-C Hetero INTERGENIC
SBS Chr3 37090908 A-G Hetero INTRON
SBS Chr4 5283364 T-A Hetero INTERGENIC
SBS Chr4 26648072 C-T Hetero INTRON
SBS Chr4 26814954 G-A Hetero INTERGENIC
SBS Chr4 27373995 A-T Hetero INTERGENIC
SBS Chr5 4430490 A-T Hetero INTERGENIC
SBS Chr5 4430491 A-T Hetero INTERGENIC
SBS Chr5 5697196 C-T Hetero INTERGENIC
SBS Chr5 12208052 C-A Hetero INTERGENIC
SBS Chr5 16610074 A-T Hetero UTR_3_PRIME
SBS Chr6 9485203 C-T Hetero INTERGENIC
SBS Chr7 5766250 G-A Homo INTERGENIC
SBS Chr7 8011949 C-T Homo INTERGENIC
SBS Chr7 16372000 G-A Homo INTERGENIC
SBS Chr7 16472897 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 16983927 T-C Hetero INTRON
SBS Chr8 12383611 C-T Hetero INTERGENIC
SBS Chr8 13311938 C-T Hetero INTERGENIC
SBS Chr8 27209467 A-T Hetero INTERGENIC
SBS Chr9 726314 C-T Hetero INTERGENIC
SBS Chr10 2892319 C-T Hetero START_GAINED
SBS Chr10 17270887 C-G Hetero INTRON
SBS Chr11 10107621 A-G Hetero INTERGENIC
SBS Chr12 22476135 C-T Hetero INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 393481 393485 4
Deletion Chr4 1328695 1328717 22
Deletion Chr7 6034270 6034282 12
Deletion Chr5 12515860 12515861 1
Deletion Chr3 13005259 13005261 2
Deletion Chr8 13107569 13107570 1
Deletion Chr7 14156263 14156272 9
Deletion Chr12 21826641 21826722 81
Deletion Chr2 25943525 25943533 8
Deletion Chr1 31726836 31726837 1
Deletion Chr1 39330849 39330864 15

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 27872907 27872910 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13498394 Chr3 598009 OsKitaake10g081200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5243966	C-T	Hetero	INTERGENIC
SBS	Chr1	15857858	A-T	Hetero	INTERGENIC
SBS	Chr1	17440752	C-G	Hetero	INTERGENIC
SBS	Chr1	40616780	C-A	Hetero	INTERGENIC
SBS	Chr2	3472710	G-A	Homo	INTERGENIC
SBS	Chr2	30415943	T-G	Homo	INTERGENIC
SBS	Chr3	22192696	A-T	Hetero	INTERGENIC
SBS	Chr3	26667094	A-G	Hetero	INTERGENIC
SBS	Chr3	30490900	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	30588847	G-C	Hetero	INTERGENIC
SBS	Chr3	37090908	A-G	Hetero	INTRON
SBS	Chr4	5283364	T-A	Hetero	INTERGENIC
SBS	Chr4	26648072	C-T	Hetero	INTRON
SBS	Chr4	26814954	G-A	Hetero	INTERGENIC
SBS	Chr4	27373995	A-T	Hetero	INTERGENIC
SBS	Chr5	4430490	A-T	Hetero	INTERGENIC
SBS	Chr5	4430491	A-T	Hetero	INTERGENIC
SBS	Chr5	5697196	C-T	Hetero	INTERGENIC
SBS	Chr5	12208052	C-A	Hetero	INTERGENIC
SBS	Chr5	16610074	A-T	Hetero	UTR_3_PRIME
SBS	Chr6	9485203	C-T	Hetero	INTERGENIC
SBS	Chr7	5766250	G-A	Homo	INTERGENIC
SBS	Chr7	8011949	C-T	Homo	INTERGENIC
SBS	Chr7	16372000	G-A	Homo	INTERGENIC
SBS	Chr7	16472897	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	16983927	T-C	Hetero	INTRON
SBS	Chr8	12383611	C-T	Hetero	INTERGENIC
SBS	Chr8	13311938	C-T	Hetero	INTERGENIC
SBS	Chr8	27209467	A-T	Hetero	INTERGENIC
SBS	Chr9	726314	C-T	Hetero	INTERGENIC
SBS	Chr10	2892319	C-T	Hetero	START_GAINED
SBS	Chr10	17270887	C-G	Hetero	INTRON
SBS	Chr11	10107621	A-G	Hetero	INTERGENIC
SBS	Chr12	22476135	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	393481	393485	4
Deletion	Chr4	1328695	1328717	22
Deletion	Chr7	6034270	6034282	12
Deletion	Chr5	12515860	12515861	1
Deletion	Chr3	13005259	13005261	2
Deletion	Chr8	13107569	13107570	1
Deletion	Chr7	14156263	14156272	9
Deletion	Chr12	21826641	21826722	81
Deletion	Chr2	25943525	25943533	8
Deletion	Chr1	31726836	31726837	1
Deletion	Chr1	39330849	39330864	15

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	13498394	Chr3	598009	OsKitaake10g081200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes