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Mutant Information

Mutant Name	FN2608-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2608-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2021756 T-A Homo INTRON
SBS Chr1 10149761 G-T Homo INTERGENIC
SBS Chr1 10149762 G-T Homo INTERGENIC
SBS Chr1 10149763 C-T Homo INTERGENIC
SBS Chr1 18060341 G-A Hetero INTERGENIC
SBS Chr1 18369477 C-T Hetero INTERGENIC
SBS Chr1 29496701 A-T Homo INTRON
SBS Chr2 2532388 C-A Hetero INTERGENIC
SBS Chr2 7224779 A-G Hetero INTRON
SBS Chr2 9805597 G-A Hetero INTERGENIC
SBS Chr2 14953821 G-T Hetero INTERGENIC
SBS Chr2 15010579 G-T Hetero INTERGENIC
SBS Chr2 15010580 A-T Hetero INTERGENIC
SBS Chr2 17510356 A-G Hetero INTERGENIC
SBS Chr2 35632237 G-A Hetero INTRON
SBS Chr2 36596210 C-T Hetero INTRON
SBS Chr3 11830766 C-T Hetero INTERGENIC
SBS Chr3 12231815 A-T Hetero INTERGENIC
SBS Chr3 18761060 A-G Hetero INTERGENIC
SBS Chr3 29315580 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g305400
SBS Chr3 32916043 T-C Hetero INTERGENIC
SBS Chr4 11410655 C-T Hetero INTERGENIC
SBS Chr4 13547675 A-G Hetero INTERGENIC
SBS Chr4 22726602 C-G Homo INTERGENIC
SBS Chr4 24416704 C-T Homo INTERGENIC
SBS Chr5 7873268 C-T Hetero INTERGENIC
SBS Chr5 13449750 T-A Hetero INTERGENIC
SBS Chr5 13449752 T-A Hetero INTERGENIC
SBS Chr5 24376300 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g196900
SBS Chr5 28938000 T-C Homo INTERGENIC
SBS Chr5 29981413 G-A Hetero INTERGENIC
SBS Chr6 12312990 T-C Homo INTERGENIC
SBS Chr6 13821116 G-A Homo INTERGENIC
SBS Chr6 25916382 G-C Hetero INTRON
SBS Chr7 6020373 A-G Hetero INTERGENIC
SBS Chr7 14957741 T-G Hetero INTERGENIC
SBS Chr7 17774794 G-A Hetero INTERGENIC
SBS Chr8 14233799 A-G Hetero INTERGENIC
SBS Chr8 19037523 A-G Hetero INTERGENIC
SBS Chr8 28661447 C-T Hetero INTERGENIC
SBS Chr9 12273663 A-T Homo INTERGENIC
SBS Chr10 391033 C-A Hetero INTERGENIC
SBS Chr10 18143840 A-T Hetero INTERGENIC
SBS Chr11 1747456 G-A Hetero UTR_3_PRIME
SBS Chr11 10812006 G-A Hetero INTERGENIC
SBS Chr11 13382553 A-G Hetero INTERGENIC
SBS Chr11 15512261 G-C Hetero INTERGENIC
SBS Chr11 17474728 A-T Hetero INTERGENIC
SBS Chr12 9598707 C-T Hetero INTERGENIC
SBS Chr12 9762312 C-A Hetero INTERGENIC
SBS Chr12 11755993 T-A Hetero INTERGENIC
SBS Chr12 19499640 C-T Hetero INTERGENIC

Deletions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 9165900 9165902 2
Deletion Chr7 15020501 15020503 2
Deletion Chr4 34565819 34565825 6 OsKitaake04g288400

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 12418132 Chr2 20672073 OsKitaake10g074600
Translocation Chr10 12447332 Chr2 20672070 OsKitaake10g075000
Translocation Chr10 13132493 Chr2 31515887

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2021756	T-A	Homo	INTRON
SBS	Chr1	10149761	G-T	Homo	INTERGENIC
SBS	Chr1	10149762	G-T	Homo	INTERGENIC
SBS	Chr1	10149763	C-T	Homo	INTERGENIC
SBS	Chr1	18060341	G-A	Hetero	INTERGENIC
SBS	Chr1	18369477	C-T	Hetero	INTERGENIC
SBS	Chr1	29496701	A-T	Homo	INTRON
SBS	Chr2	2532388	C-A	Hetero	INTERGENIC
SBS	Chr2	7224779	A-G	Hetero	INTRON
SBS	Chr2	9805597	G-A	Hetero	INTERGENIC
SBS	Chr2	14953821	G-T	Hetero	INTERGENIC
SBS	Chr2	15010579	G-T	Hetero	INTERGENIC
SBS	Chr2	15010580	A-T	Hetero	INTERGENIC
SBS	Chr2	17510356	A-G	Hetero	INTERGENIC
SBS	Chr2	35632237	G-A	Hetero	INTRON
SBS	Chr2	36596210	C-T	Hetero	INTRON
SBS	Chr3	11830766	C-T	Hetero	INTERGENIC
SBS	Chr3	12231815	A-T	Hetero	INTERGENIC
SBS	Chr3	18761060	A-G	Hetero	INTERGENIC
SBS	Chr3	29315580	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g305400
SBS	Chr3	32916043	T-C	Hetero	INTERGENIC
SBS	Chr4	11410655	C-T	Hetero	INTERGENIC
SBS	Chr4	13547675	A-G	Hetero	INTERGENIC
SBS	Chr4	22726602	C-G	Homo	INTERGENIC
SBS	Chr4	24416704	C-T	Homo	INTERGENIC
SBS	Chr5	7873268	C-T	Hetero	INTERGENIC
SBS	Chr5	13449750	T-A	Hetero	INTERGENIC
SBS	Chr5	13449752	T-A	Hetero	INTERGENIC
SBS	Chr5	24376300	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g196900
SBS	Chr5	28938000	T-C	Homo	INTERGENIC
SBS	Chr5	29981413	G-A	Hetero	INTERGENIC
SBS	Chr6	12312990	T-C	Homo	INTERGENIC
SBS	Chr6	13821116	G-A	Homo	INTERGENIC
SBS	Chr6	25916382	G-C	Hetero	INTRON
SBS	Chr7	6020373	A-G	Hetero	INTERGENIC
SBS	Chr7	14957741	T-G	Hetero	INTERGENIC
SBS	Chr7	17774794	G-A	Hetero	INTERGENIC
SBS	Chr8	14233799	A-G	Hetero	INTERGENIC
SBS	Chr8	19037523	A-G	Hetero	INTERGENIC
SBS	Chr8	28661447	C-T	Hetero	INTERGENIC
SBS	Chr9	12273663	A-T	Homo	INTERGENIC
SBS	Chr10	391033	C-A	Hetero	INTERGENIC
SBS	Chr10	18143840	A-T	Hetero	INTERGENIC
SBS	Chr11	1747456	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	10812006	G-A	Hetero	INTERGENIC
SBS	Chr11	13382553	A-G	Hetero	INTERGENIC
SBS	Chr11	15512261	G-C	Hetero	INTERGENIC
SBS	Chr11	17474728	A-T	Hetero	INTERGENIC
SBS	Chr12	9598707	C-T	Hetero	INTERGENIC
SBS	Chr12	9762312	C-A	Hetero	INTERGENIC
SBS	Chr12	11755993	T-A	Hetero	INTERGENIC
SBS	Chr12	19499640	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	9165900	9165902	2
Deletion	Chr7	15020501	15020503	2
Deletion	Chr4	34565819	34565825	6	OsKitaake04g288400

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	12418132	Chr2	20672073	OsKitaake10g074600
Translocation	Chr10	12447332	Chr2	20672070	OsKitaake10g075000
Translocation	Chr10	13132493	Chr2	31515887

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes