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Mutant Information

Mutant Name	FN2611-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2611-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 80

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 117901 G-C Hetero INTERGENIC
SBS Chr1 117902 A-T Hetero INTERGENIC
SBS Chr1 2725099 T-C Hetero INTRON
SBS Chr1 4876991 T-C Hetero INTERGENIC
SBS Chr1 4877132 G-T Hetero INTERGENIC
SBS Chr1 7975559 A-G Hetero UTR_3_PRIME
SBS Chr1 14990496 G-A Hetero INTERGENIC
SBS Chr1 15485813 C-T Hetero INTERGENIC
SBS Chr1 16204227 C-G Hetero INTERGENIC
SBS Chr1 19246367 A-G Hetero INTERGENIC
SBS Chr2 333673 C-T Hetero INTERGENIC
SBS Chr2 870498 C-T Hetero INTERGENIC
SBS Chr2 6290931 A-G Hetero INTERGENIC
SBS Chr2 11320160 T-C Hetero INTRON
SBS Chr2 17448507 C-A Hetero INTRON
SBS Chr2 18451103 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 20884866 G-A Hetero INTERGENIC
SBS Chr2 30528177 G-A Hetero INTRON
SBS Chr2 30528178 T-A Hetero INTRON
SBS Chr3 60297 C-T Hetero INTERGENIC
SBS Chr3 1676447 T-A Hetero INTRON
SBS Chr3 1933258 T-A Hetero INTERGENIC
SBS Chr3 7400723 A-G Hetero INTRON
SBS Chr3 9427609 C-T Hetero INTERGENIC
SBS Chr3 11262720 T-G Hetero INTERGENIC
SBS Chr3 12976287 C-T Hetero INTERGENIC
SBS Chr3 13410383 T-C Hetero INTERGENIC
SBS Chr3 14222551 C-T Hetero INTERGENIC
SBS Chr4 3656871 G-C Hetero INTRON
SBS Chr4 3709866 C-G Hetero INTERGENIC
SBS Chr4 15773615 C-T Hetero INTERGENIC
SBS Chr4 27292237 A-G Hetero INTRON
SBS Chr4 27502665 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g201200
SBS Chr5 2151970 C-T Hetero INTERGENIC
SBS Chr5 2605124 C-T Hetero INTERGENIC
SBS Chr5 8539839 A-G Hetero INTERGENIC
SBS Chr5 14176633 G-A Hetero INTERGENIC
SBS Chr5 15985790 G-T Hetero INTERGENIC
SBS Chr5 22970267 C-A Hetero INTERGENIC
SBS Chr5 23681016 T-C Hetero INTERGENIC
SBS Chr6 790106 G-T Hetero INTERGENIC
SBS Chr6 1359629 C-T Hetero INTERGENIC
SBS Chr6 11993781 G-A Hetero INTERGENIC
SBS Chr6 13987703 T-C Hetero INTRON
SBS Chr6 18007892 T-A Hetero INTERGENIC
SBS Chr6 18700304 C-T Hetero INTERGENIC
SBS Chr7 1474693 G-C Hetero UTR_3_PRIME
SBS Chr7 4393284 A-T Hetero INTERGENIC
SBS Chr7 16788182 A-G Hetero UTR_3_PRIME
SBS Chr7 24547668 T-A Hetero INTRON
SBS Chr7 27585481 T-A Hetero INTRON
SBS Chr8 159295 C-T Hetero INTERGENIC
SBS Chr8 8057153 G-A Hetero INTERGENIC
SBS Chr8 9976131 G-A Hetero INTERGENIC
SBS Chr8 16183643 T-C Hetero INTERGENIC
SBS Chr8 16714729 G-A Hetero INTERGENIC
SBS Chr8 19490714 T-G Hetero INTERGENIC
SBS Chr8 19490716 A-T Hetero INTERGENIC
SBS Chr8 28190536 C-T Hetero INTERGENIC
SBS Chr9 4574943 C-A Hetero INTERGENIC
SBS Chr9 20061413 A-T Hetero INTERGENIC
SBS Chr9 20813309 G-C Hetero INTERGENIC
SBS Chr9 20817170 A-G Hetero INTERGENIC
SBS Chr10 717886 T-A Hetero INTERGENIC
SBS Chr10 1984867 G-T Hetero INTERGENIC
SBS Chr10 22080253 C-T Hetero INTERGENIC
SBS Chr11 857016 G-A Hetero INTERGENIC
SBS Chr11 1232137 G-A Hetero UTR_3_PRIME
SBS Chr11 8222967 T-G Hetero INTERGENIC
SBS Chr11 12108887 T-C Hetero INTERGENIC
SBS Chr11 12660840 T-C Hetero INTERGENIC
SBS Chr11 29159758 G-A Hetero UTR_5_PRIME
SBS Chr11 29606771 T-G Hetero INTRON
SBS Chr12 3694468 A-T Hetero INTRON
SBS Chr12 7685246 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g083200
SBS Chr12 8708714 T-C Hetero INTRON
SBS Chr12 17346164 A-T Hetero INTERGENIC
SBS Chr12 18479728 T-C Hetero SYNONYMOUS_CODING
SBS Chr12 22531314 C-T Hetero INTERGENIC
SBS Chr12 22531315 C-G Hetero INTERGENIC

Deletions: 34

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1380233 1380235 2
Deletion Chr9 2712154 2712158 4
Deletion Chr10 3092192 3092193 1
Deletion Chr7 3657522 3657524 2 OsKitaake07g046900
Deletion Chr9 4556152 4556154 2
Deletion Chr1 7389422 7389429 7 OsKitaake01g092308
Deletion Chr7 7998298 7998301 3
Deletion Chr9 8896062 8896073 11
Deletion Chr3 9202206 9202212 6 OsKitaake03g125800
Deletion Chr12 10146429 10146435 6
Deletion Chr10 12326001 12461000 134999 12
Deletion Chr12 13567932 13567937 5
Deletion Chr3 14080997 14081000 3
Deletion Chr3 14813641 14813649 8
Deletion Chr5 15250089 15250096 7
Deletion Chr5 15771650 15771658 8
Deletion Chr1 16120957 16120975 18
Deletion Chr9 19504966 19504968 2
Deletion Chr4 20064007 20064010 3 OsKitaake04g105500
Deletion Chr3 20266438 20266439 1
Deletion Chr4 21591683 21591686 3
Deletion Chr8 22590124 22590132 8
Deletion Chr2 23275557 23275561 4
Deletion Chr5 24966652 24966654 2
Deletion Chr11 27215817 27215831 14
Deletion Chr3 28439059 28439061 2
Deletion Chr4 29507352 29507359 7
Deletion Chr3 30024101 30024103 2
Deletion Chr4 30473048 30473052 4
Deletion Chr4 31226903 31226904 1
Deletion Chr3 32962321 32962322 1
Deletion Chr1 34084991 34084993 2
Deletion Chr1 37300210 37300223 13
Deletion Chr1 38725349 38725360 11

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37152932 37152935 2
Insertion Chr3 5367069 5367073 3
Insertion Chr3 15531217 15531220 2
Insertion Chr4 30540499 30540502 2
Insertion Chr7 12663881 12663884 2
Insertion Chr10 6979891 6979901 9
Insertion Chr10 20427374 20427378 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 15675635 15781720 OsKitaake01g172200
Inversion Chr1 15675649 15781735 OsKitaake01g172200
Inversion Chr8 19204237 19208116

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 23856976 Chr7 26276531 OsKitaake07g241700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	117901	G-C	Hetero	INTERGENIC
SBS	Chr1	117902	A-T	Hetero	INTERGENIC
SBS	Chr1	2725099	T-C	Hetero	INTRON
SBS	Chr1	4876991	T-C	Hetero	INTERGENIC
SBS	Chr1	4877132	G-T	Hetero	INTERGENIC
SBS	Chr1	7975559	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	14990496	G-A	Hetero	INTERGENIC
SBS	Chr1	15485813	C-T	Hetero	INTERGENIC
SBS	Chr1	16204227	C-G	Hetero	INTERGENIC
SBS	Chr1	19246367	A-G	Hetero	INTERGENIC
SBS	Chr2	333673	C-T	Hetero	INTERGENIC
SBS	Chr2	870498	C-T	Hetero	INTERGENIC
SBS	Chr2	6290931	A-G	Hetero	INTERGENIC
SBS	Chr2	11320160	T-C	Hetero	INTRON
SBS	Chr2	17448507	C-A	Hetero	INTRON
SBS	Chr2	18451103	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	20884866	G-A	Hetero	INTERGENIC
SBS	Chr2	30528177	G-A	Hetero	INTRON
SBS	Chr2	30528178	T-A	Hetero	INTRON
SBS	Chr3	60297	C-T	Hetero	INTERGENIC
SBS	Chr3	1676447	T-A	Hetero	INTRON
SBS	Chr3	1933258	T-A	Hetero	INTERGENIC
SBS	Chr3	7400723	A-G	Hetero	INTRON
SBS	Chr3	9427609	C-T	Hetero	INTERGENIC
SBS	Chr3	11262720	T-G	Hetero	INTERGENIC
SBS	Chr3	12976287	C-T	Hetero	INTERGENIC
SBS	Chr3	13410383	T-C	Hetero	INTERGENIC
SBS	Chr3	14222551	C-T	Hetero	INTERGENIC
SBS	Chr4	3656871	G-C	Hetero	INTRON
SBS	Chr4	3709866	C-G	Hetero	INTERGENIC
SBS	Chr4	15773615	C-T	Hetero	INTERGENIC
SBS	Chr4	27292237	A-G	Hetero	INTRON
SBS	Chr4	27502665	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g201200
SBS	Chr5	2151970	C-T	Hetero	INTERGENIC
SBS	Chr5	2605124	C-T	Hetero	INTERGENIC
SBS	Chr5	8539839	A-G	Hetero	INTERGENIC
SBS	Chr5	14176633	G-A	Hetero	INTERGENIC
SBS	Chr5	15985790	G-T	Hetero	INTERGENIC
SBS	Chr5	22970267	C-A	Hetero	INTERGENIC
SBS	Chr5	23681016	T-C	Hetero	INTERGENIC
SBS	Chr6	790106	G-T	Hetero	INTERGENIC
SBS	Chr6	1359629	C-T	Hetero	INTERGENIC
SBS	Chr6	11993781	G-A	Hetero	INTERGENIC
SBS	Chr6	13987703	T-C	Hetero	INTRON
SBS	Chr6	18007892	T-A	Hetero	INTERGENIC
SBS	Chr6	18700304	C-T	Hetero	INTERGENIC
SBS	Chr7	1474693	G-C	Hetero	UTR_3_PRIME
SBS	Chr7	4393284	A-T	Hetero	INTERGENIC
SBS	Chr7	16788182	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	24547668	T-A	Hetero	INTRON
SBS	Chr7	27585481	T-A	Hetero	INTRON
SBS	Chr8	159295	C-T	Hetero	INTERGENIC
SBS	Chr8	8057153	G-A	Hetero	INTERGENIC
SBS	Chr8	9976131	G-A	Hetero	INTERGENIC
SBS	Chr8	16183643	T-C	Hetero	INTERGENIC
SBS	Chr8	16714729	G-A	Hetero	INTERGENIC
SBS	Chr8	19490714	T-G	Hetero	INTERGENIC
SBS	Chr8	19490716	A-T	Hetero	INTERGENIC
SBS	Chr8	28190536	C-T	Hetero	INTERGENIC
SBS	Chr9	4574943	C-A	Hetero	INTERGENIC
SBS	Chr9	20061413	A-T	Hetero	INTERGENIC
SBS	Chr9	20813309	G-C	Hetero	INTERGENIC
SBS	Chr9	20817170	A-G	Hetero	INTERGENIC
SBS	Chr10	717886	T-A	Hetero	INTERGENIC
SBS	Chr10	1984867	G-T	Hetero	INTERGENIC
SBS	Chr10	22080253	C-T	Hetero	INTERGENIC
SBS	Chr11	857016	G-A	Hetero	INTERGENIC
SBS	Chr11	1232137	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	8222967	T-G	Hetero	INTERGENIC
SBS	Chr11	12108887	T-C	Hetero	INTERGENIC
SBS	Chr11	12660840	T-C	Hetero	INTERGENIC
SBS	Chr11	29159758	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	29606771	T-G	Hetero	INTRON
SBS	Chr12	3694468	A-T	Hetero	INTRON
SBS	Chr12	7685246	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g083200
SBS	Chr12	8708714	T-C	Hetero	INTRON
SBS	Chr12	17346164	A-T	Hetero	INTERGENIC
SBS	Chr12	18479728	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr12	22531314	C-T	Hetero	INTERGENIC
SBS	Chr12	22531315	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1380233	1380235	2
Deletion	Chr9	2712154	2712158	4
Deletion	Chr10	3092192	3092193	1
Deletion	Chr7	3657522	3657524	2	OsKitaake07g046900
Deletion	Chr9	4556152	4556154	2
Deletion	Chr1	7389422	7389429	7	OsKitaake01g092308
Deletion	Chr7	7998298	7998301	3
Deletion	Chr9	8896062	8896073	11
Deletion	Chr3	9202206	9202212	6	OsKitaake03g125800
Deletion	Chr12	10146429	10146435	6
Deletion	Chr10	12326001	12461000	134999	12
Deletion	Chr12	13567932	13567937	5
Deletion	Chr3	14080997	14081000	3
Deletion	Chr3	14813641	14813649	8
Deletion	Chr5	15250089	15250096	7
Deletion	Chr5	15771650	15771658	8
Deletion	Chr1	16120957	16120975	18
Deletion	Chr9	19504966	19504968	2
Deletion	Chr4	20064007	20064010	3	OsKitaake04g105500
Deletion	Chr3	20266438	20266439	1
Deletion	Chr4	21591683	21591686	3
Deletion	Chr8	22590124	22590132	8
Deletion	Chr2	23275557	23275561	4
Deletion	Chr5	24966652	24966654	2
Deletion	Chr11	27215817	27215831	14
Deletion	Chr3	28439059	28439061	2
Deletion	Chr4	29507352	29507359	7
Deletion	Chr3	30024101	30024103	2
Deletion	Chr4	30473048	30473052	4
Deletion	Chr4	31226903	31226904	1
Deletion	Chr3	32962321	32962322	1
Deletion	Chr1	34084991	34084993	2
Deletion	Chr1	37300210	37300223	13
Deletion	Chr1	38725349	38725360	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	15675635	15781720	OsKitaake01g172200
Inversion	Chr1	15675649	15781735	OsKitaake01g172200
Inversion	Chr8	19204237	19208116

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes