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Mutant Information

Mutant Name	FN2612-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2612-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 64

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4282151 C-T Hetero INTERGENIC
SBS Chr1 14966964 A-C Hetero INTERGENIC
SBS Chr1 19182504 C-T Hetero INTERGENIC
SBS Chr1 22015323 A-T Hetero INTERGENIC
SBS Chr1 27859925 G-T Hetero INTERGENIC
SBS Chr1 27859926 C-T Hetero INTERGENIC
SBS Chr1 35354835 T-C Homo INTERGENIC
SBS Chr1 38048496 G-T Hetero INTRON
SBS Chr2 20235045 G-A Hetero INTERGENIC
SBS Chr2 29053257 A-G Hetero INTERGENIC
SBS Chr3 721502 G-A Hetero INTERGENIC
SBS Chr3 11410146 A-T Homo SYNONYMOUS_CODING
SBS Chr3 14857304 G-A Homo INTERGENIC
SBS Chr3 33722031 A-G Hetero INTRON
SBS Chr3 37302962 C-T Hetero INTERGENIC
SBS Chr4 73617 G-A Hetero INTERGENIC
SBS Chr4 23242229 T-G Homo INTERGENIC
SBS Chr4 29085552 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g219900
SBS Chr4 32335804 G-A Hetero INTRON
SBS Chr5 2500073 T-G Hetero INTERGENIC
SBS Chr5 5069149 T-C Hetero INTERGENIC
SBS Chr5 6667659 C-T Hetero INTERGENIC
SBS Chr5 9185083 C-A Hetero INTERGENIC
SBS Chr5 9439553 C-T Hetero INTERGENIC
SBS Chr5 9670936 A-G Hetero INTERGENIC
SBS Chr5 10075322 G-A Hetero INTERGENIC
SBS Chr5 11235979 G-A Hetero INTERGENIC
SBS Chr5 12855399 C-A Hetero INTERGENIC
SBS Chr5 14487213 C-A Hetero INTERGENIC
SBS Chr5 17522326 C-T Hetero INTERGENIC
SBS Chr5 18691554 C-A Hetero INTERGENIC
SBS Chr5 18960936 G-A Hetero INTERGENIC
SBS Chr5 23308230 C-T Hetero INTERGENIC
SBS Chr6 22182681 G-A Hetero INTERGENIC
SBS Chr6 23424642 C-T Hetero INTERGENIC
SBS Chr7 21251660 G-A Homo INTERGENIC
SBS Chr8 14446426 A-G Hetero INTERGENIC
SBS Chr9 6895063 C-T Hetero INTERGENIC
SBS Chr9 11054140 C-T Hetero INTERGENIC
SBS Chr9 13913932 C-T Hetero INTERGENIC
SBS Chr9 16022224 C-G Hetero INTERGENIC
SBS Chr10 1639957 T-C Hetero INTERGENIC
SBS Chr10 3410834 C-T Hetero INTERGENIC
SBS Chr10 4296638 G-T Hetero INTERGENIC
SBS Chr10 4296639 T-A Hetero INTERGENIC
SBS Chr10 5764360 T-C Hetero INTERGENIC
SBS Chr10 14220190 A-T Hetero INTERGENIC
SBS Chr10 17053879 C-T Hetero INTERGENIC
SBS Chr11 12601473 C-T Hetero INTERGENIC
SBS Chr11 16751624 C-T Homo INTERGENIC
SBS Chr11 18894264 T-A Hetero INTRON
SBS Chr11 24873834 T-A Hetero INTRON
SBS Chr11 27104828 A-G Homo INTERGENIC
SBS Chr11 27677568 G-A Hetero INTRON
SBS Chr12 5219393 A-T Hetero INTERGENIC
SBS Chr12 5440923 G-T Hetero INTERGENIC
SBS Chr12 8054594 G-T Hetero INTERGENIC
SBS Chr12 9557067 T-C Homo UTR_3_PRIME
SBS Chr12 9970649 G-T Homo INTERGENIC
SBS Chr12 9970650 C-T Homo INTERGENIC
SBS Chr12 11993871 G-A Hetero INTERGENIC
SBS Chr12 16022890 C-T Homo INTERGENIC
SBS Chr12 26871159 G-A Hetero INTERGENIC
SBS Chr12 26871160 G-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2226011 2226013 2
Deletion Chr11 3128346 3128349 3
Deletion Chr12 5219001 5265000 45999 5
Deletion Chr10 8675813 8675979 166
Deletion Chr12 8904331 8904332 1
Deletion Chr1 10032952 10032959 7
Deletion Chr11 12161815 12161816 1
Deletion Chr8 14054134 14054149 15
Deletion Chr4 14571295 14571304 9
Deletion Chr1 14962060 14962064 4
Deletion Chr11 18449001 18775000 325999 34
Deletion Chr2 18504776 18504781 5
Deletion Chr4 19133131 19133146 15
Deletion Chr6 22660863 22660864 1
Deletion Chr3 24052502 24052503 1
Deletion Chr1 26986001 27010000 23999 2
Deletion Chr4 30058244 30058246 2
Deletion Chr1 31128010 31128012 2
Deletion Chr2 33683097 33683098 1
Deletion Chr1 40322920 40322929 9

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37152932 37152940 7
Insertion Chr4 21553410 21553419 8
Insertion Chr5 28002707 28002716 8
Insertion Chr7 2673917 2673920 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 18021612 18451312
Inversion Chr11 18775492 18778643 2
Inversion Chr11 21206539 21207653
Inversion Chr1 25547770 25695032 2
Inversion Chr1 25653756 25695030 OsKitaake01g249700
Inversion Chr1 36103050 36621177
Inversion Chr1 36103052 36621178

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5120398 Chr4 28164352 OsKitaake12g064800
Translocation Chr12 6137692 Chr7 22336512 OsKitaake07g189000
Translocation Chr12 6146108 Chr7 22336499 OsKitaake07g189000
Translocation Chr4 21847924 Chr2 20416126 OsKitaake04g125500
Translocation Chr4 21847933 Chr2 20415983 OsKitaake04g125500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4282151	C-T	Hetero	INTERGENIC
SBS	Chr1	14966964	A-C	Hetero	INTERGENIC
SBS	Chr1	19182504	C-T	Hetero	INTERGENIC
SBS	Chr1	22015323	A-T	Hetero	INTERGENIC
SBS	Chr1	27859925	G-T	Hetero	INTERGENIC
SBS	Chr1	27859926	C-T	Hetero	INTERGENIC
SBS	Chr1	35354835	T-C	Homo	INTERGENIC
SBS	Chr1	38048496	G-T	Hetero	INTRON
SBS	Chr2	20235045	G-A	Hetero	INTERGENIC
SBS	Chr2	29053257	A-G	Hetero	INTERGENIC
SBS	Chr3	721502	G-A	Hetero	INTERGENIC
SBS	Chr3	11410146	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	14857304	G-A	Homo	INTERGENIC
SBS	Chr3	33722031	A-G	Hetero	INTRON
SBS	Chr3	37302962	C-T	Hetero	INTERGENIC
SBS	Chr4	73617	G-A	Hetero	INTERGENIC
SBS	Chr4	23242229	T-G	Homo	INTERGENIC
SBS	Chr4	29085552	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g219900
SBS	Chr4	32335804	G-A	Hetero	INTRON
SBS	Chr5	2500073	T-G	Hetero	INTERGENIC
SBS	Chr5	5069149	T-C	Hetero	INTERGENIC
SBS	Chr5	6667659	C-T	Hetero	INTERGENIC
SBS	Chr5	9185083	C-A	Hetero	INTERGENIC
SBS	Chr5	9439553	C-T	Hetero	INTERGENIC
SBS	Chr5	9670936	A-G	Hetero	INTERGENIC
SBS	Chr5	10075322	G-A	Hetero	INTERGENIC
SBS	Chr5	11235979	G-A	Hetero	INTERGENIC
SBS	Chr5	12855399	C-A	Hetero	INTERGENIC
SBS	Chr5	14487213	C-A	Hetero	INTERGENIC
SBS	Chr5	17522326	C-T	Hetero	INTERGENIC
SBS	Chr5	18691554	C-A	Hetero	INTERGENIC
SBS	Chr5	18960936	G-A	Hetero	INTERGENIC
SBS	Chr5	23308230	C-T	Hetero	INTERGENIC
SBS	Chr6	22182681	G-A	Hetero	INTERGENIC
SBS	Chr6	23424642	C-T	Hetero	INTERGENIC
SBS	Chr7	21251660	G-A	Homo	INTERGENIC
SBS	Chr8	14446426	A-G	Hetero	INTERGENIC
SBS	Chr9	6895063	C-T	Hetero	INTERGENIC
SBS	Chr9	11054140	C-T	Hetero	INTERGENIC
SBS	Chr9	13913932	C-T	Hetero	INTERGENIC
SBS	Chr9	16022224	C-G	Hetero	INTERGENIC
SBS	Chr10	1639957	T-C	Hetero	INTERGENIC
SBS	Chr10	3410834	C-T	Hetero	INTERGENIC
SBS	Chr10	4296638	G-T	Hetero	INTERGENIC
SBS	Chr10	4296639	T-A	Hetero	INTERGENIC
SBS	Chr10	5764360	T-C	Hetero	INTERGENIC
SBS	Chr10	14220190	A-T	Hetero	INTERGENIC
SBS	Chr10	17053879	C-T	Hetero	INTERGENIC
SBS	Chr11	12601473	C-T	Hetero	INTERGENIC
SBS	Chr11	16751624	C-T	Homo	INTERGENIC
SBS	Chr11	18894264	T-A	Hetero	INTRON
SBS	Chr11	24873834	T-A	Hetero	INTRON
SBS	Chr11	27104828	A-G	Homo	INTERGENIC
SBS	Chr11	27677568	G-A	Hetero	INTRON
SBS	Chr12	5219393	A-T	Hetero	INTERGENIC
SBS	Chr12	5440923	G-T	Hetero	INTERGENIC
SBS	Chr12	8054594	G-T	Hetero	INTERGENIC
SBS	Chr12	9557067	T-C	Homo	UTR_3_PRIME
SBS	Chr12	9970649	G-T	Homo	INTERGENIC
SBS	Chr12	9970650	C-T	Homo	INTERGENIC
SBS	Chr12	11993871	G-A	Hetero	INTERGENIC
SBS	Chr12	16022890	C-T	Homo	INTERGENIC
SBS	Chr12	26871159	G-A	Hetero	INTERGENIC
SBS	Chr12	26871160	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2226011	2226013	2
Deletion	Chr11	3128346	3128349	3
Deletion	Chr12	5219001	5265000	45999	5
Deletion	Chr10	8675813	8675979	166
Deletion	Chr12	8904331	8904332	1
Deletion	Chr1	10032952	10032959	7
Deletion	Chr11	12161815	12161816	1
Deletion	Chr8	14054134	14054149	15
Deletion	Chr4	14571295	14571304	9
Deletion	Chr1	14962060	14962064	4
Deletion	Chr11	18449001	18775000	325999	34
Deletion	Chr2	18504776	18504781	5
Deletion	Chr4	19133131	19133146	15
Deletion	Chr6	22660863	22660864	1
Deletion	Chr3	24052502	24052503	1
Deletion	Chr1	26986001	27010000	23999	2
Deletion	Chr4	30058244	30058246	2
Deletion	Chr1	31128010	31128012	2
Deletion	Chr2	33683097	33683098	1
Deletion	Chr1	40322920	40322929	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	18021612	18451312
Inversion	Chr11	18775492	18778643	2
Inversion	Chr11	21206539	21207653
Inversion	Chr1	25547770	25695032	2
Inversion	Chr1	25653756	25695030	OsKitaake01g249700
Inversion	Chr1	36103050	36621177
Inversion	Chr1	36103052	36621178

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes