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Mutant Information

Mutant Name	FN2614-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2614-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2061695 G-A Hetero INTERGENIC
SBS Chr1 13850945 C-G Hetero INTERGENIC
SBS Chr1 15487852 G-A Hetero INTERGENIC
SBS Chr1 19519631 A-T Hetero INTERGENIC
SBS Chr2 4742888 T-C Homo INTRON
SBS Chr2 28427903 C-A Hetero INTERGENIC
SBS Chr2 31737409 T-C Hetero INTERGENIC
SBS Chr2 35758188 T-A Hetero INTERGENIC
SBS Chr3 5187943 C-A Hetero INTERGENIC
SBS Chr3 11495459 C-A Hetero UTR_3_PRIME
SBS Chr3 33773019 C-T Hetero INTERGENIC
SBS Chr4 8744960 C-T Homo INTERGENIC
SBS Chr4 10309770 T-C Homo INTERGENIC
SBS Chr4 25610029 T-A Homo INTERGENIC
SBS Chr4 29570256 G-A Hetero INTRON
SBS Chr4 30871557 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 7807821 A-G Hetero INTERGENIC
SBS Chr5 14511495 C-A Hetero INTERGENIC
SBS Chr5 17757796 G-A Homo INTERGENIC
SBS Chr6 17439612 C-A Hetero INTERGENIC
SBS Chr6 29534506 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g274400
SBS Chr7 10286293 G-A Hetero INTERGENIC
SBS Chr7 12643354 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g112600
SBS Chr7 18098416 G-A Hetero INTERGENIC
SBS Chr7 21179940 T-A Hetero INTERGENIC
SBS Chr8 12743865 C-A Hetero INTERGENIC
SBS Chr8 14767022 A-T Hetero INTERGENIC
SBS Chr8 16376474 C-T Hetero INTERGENIC
SBS Chr8 19159521 G-A Hetero INTERGENIC
SBS Chr9 1804305 C-A Hetero INTERGENIC
SBS Chr9 5667419 T-C Homo UTR_3_PRIME
SBS Chr9 8925705 C-T Hetero INTERGENIC
SBS Chr9 9905855 G-A Hetero INTERGENIC
SBS Chr9 11541288 G-C Hetero INTERGENIC
SBS Chr10 2304871 T-C Hetero UTR_5_PRIME
SBS Chr10 9680833 T-C Homo INTERGENIC
SBS Chr10 18756077 A-C Hetero INTERGENIC
SBS Chr11 11200588 A-G Homo INTERGENIC
SBS Chr11 29028353 G-A Homo INTERGENIC
SBS Chr12 6288275 G-A Hetero INTERGENIC
SBS Chr12 6288276 G-A Hetero INTERGENIC
SBS Chr12 17583064 G-A Hetero INTERGENIC
SBS Chr12 18201003 G-A Hetero INTERGENIC
SBS Chr12 23758524 C-T Hetero INTERGENIC
SBS Chr12 24204392 G-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 889045 889049 4
Deletion Chr5 889437 889440 3
Deletion Chr7 992985 992989 4
Deletion Chr3 1091001 1106000 14999 OsKitaake03g016901
Deletion Chr12 5663018 5663022 4
Deletion Chr11 9211418 9211428 10
Deletion Chr5 9471445 9471448 3
Deletion Chr3 9853442 9853452 10 OsKitaake03g134600
Deletion Chr5 11817677 11817690 13
Deletion Chr10 11866883 11866884 1
Deletion Chr6 13012967 13012976 9 OsKitaake06g138300
Deletion Chr10 13926300 13926301 1
Deletion Chr10 14936544 14936545 1
Deletion Chr11 14978582 14978600 18
Deletion Chr4 17008376 17008377 1
Deletion Chr2 18095001 18162000 66999 7
Deletion Chr6 19913001 19917000 3999
Deletion Chr7 22365137 22365140 3 OsKitaake07g189500
Deletion Chr5 23260384 23260404 20
Deletion Chr2 24401641 24401644 3 OsKitaake02g242600
Deletion Chr4 25468108 25468109 1
Deletion Chr11 29643579 29643591 12

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10659544 10659546 1
Insertion Chr1 24761923 24761926 2
Insertion Chr3 33225081 33225088 6
Insertion Chr6 21752501 21752504 2
Insertion Chr9 12250381 12250384 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 1492866 1745506 OsKitaake09g009600
Inversion Chr8 14199736 15126719
Inversion Chr12 17376660 18346541 OsKitaake12g127600
Inversion Chr12 17376671 18346548 OsKitaake12g127600

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 11298694 Chr2 17904322
Translocation Chr10 11299128 Chr2 17904319
Translocation Chr9 17814578 Chr8 14199737

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2061695	G-A	Hetero	INTERGENIC
SBS	Chr1	13850945	C-G	Hetero	INTERGENIC
SBS	Chr1	15487852	G-A	Hetero	INTERGENIC
SBS	Chr1	19519631	A-T	Hetero	INTERGENIC
SBS	Chr2	4742888	T-C	Homo	INTRON
SBS	Chr2	28427903	C-A	Hetero	INTERGENIC
SBS	Chr2	31737409	T-C	Hetero	INTERGENIC
SBS	Chr2	35758188	T-A	Hetero	INTERGENIC
SBS	Chr3	5187943	C-A	Hetero	INTERGENIC
SBS	Chr3	11495459	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	33773019	C-T	Hetero	INTERGENIC
SBS	Chr4	8744960	C-T	Homo	INTERGENIC
SBS	Chr4	10309770	T-C	Homo	INTERGENIC
SBS	Chr4	25610029	T-A	Homo	INTERGENIC
SBS	Chr4	29570256	G-A	Hetero	INTRON
SBS	Chr4	30871557	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	7807821	A-G	Hetero	INTERGENIC
SBS	Chr5	14511495	C-A	Hetero	INTERGENIC
SBS	Chr5	17757796	G-A	Homo	INTERGENIC
SBS	Chr6	17439612	C-A	Hetero	INTERGENIC
SBS	Chr6	29534506	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g274400
SBS	Chr7	10286293	G-A	Hetero	INTERGENIC
SBS	Chr7	12643354	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g112600
SBS	Chr7	18098416	G-A	Hetero	INTERGENIC
SBS	Chr7	21179940	T-A	Hetero	INTERGENIC
SBS	Chr8	12743865	C-A	Hetero	INTERGENIC
SBS	Chr8	14767022	A-T	Hetero	INTERGENIC
SBS	Chr8	16376474	C-T	Hetero	INTERGENIC
SBS	Chr8	19159521	G-A	Hetero	INTERGENIC
SBS	Chr9	1804305	C-A	Hetero	INTERGENIC
SBS	Chr9	5667419	T-C	Homo	UTR_3_PRIME
SBS	Chr9	8925705	C-T	Hetero	INTERGENIC
SBS	Chr9	9905855	G-A	Hetero	INTERGENIC
SBS	Chr9	11541288	G-C	Hetero	INTERGENIC
SBS	Chr10	2304871	T-C	Hetero	UTR_5_PRIME
SBS	Chr10	9680833	T-C	Homo	INTERGENIC
SBS	Chr10	18756077	A-C	Hetero	INTERGENIC
SBS	Chr11	11200588	A-G	Homo	INTERGENIC
SBS	Chr11	29028353	G-A	Homo	INTERGENIC
SBS	Chr12	6288275	G-A	Hetero	INTERGENIC
SBS	Chr12	6288276	G-A	Hetero	INTERGENIC
SBS	Chr12	17583064	G-A	Hetero	INTERGENIC
SBS	Chr12	18201003	G-A	Hetero	INTERGENIC
SBS	Chr12	23758524	C-T	Hetero	INTERGENIC
SBS	Chr12	24204392	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	889045	889049	4
Deletion	Chr5	889437	889440	3
Deletion	Chr7	992985	992989	4
Deletion	Chr3	1091001	1106000	14999	OsKitaake03g016901
Deletion	Chr12	5663018	5663022	4
Deletion	Chr11	9211418	9211428	10
Deletion	Chr5	9471445	9471448	3
Deletion	Chr3	9853442	9853452	10	OsKitaake03g134600
Deletion	Chr5	11817677	11817690	13
Deletion	Chr10	11866883	11866884	1
Deletion	Chr6	13012967	13012976	9	OsKitaake06g138300
Deletion	Chr10	13926300	13926301	1
Deletion	Chr10	14936544	14936545	1
Deletion	Chr11	14978582	14978600	18
Deletion	Chr4	17008376	17008377	1
Deletion	Chr2	18095001	18162000	66999	7
Deletion	Chr6	19913001	19917000	3999
Deletion	Chr7	22365137	22365140	3	OsKitaake07g189500
Deletion	Chr5	23260384	23260404	20
Deletion	Chr2	24401641	24401644	3	OsKitaake02g242600
Deletion	Chr4	25468108	25468109	1
Deletion	Chr11	29643579	29643591	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1492866	1745506	OsKitaake09g009600
Inversion	Chr8	14199736	15126719
Inversion	Chr12	17376660	18346541	OsKitaake12g127600
Inversion	Chr12	17376671	18346548	OsKitaake12g127600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes