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Mutant Information

Mutant Name	FN2617-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2617-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 64

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5996444 T-A Hetero INTRON
SBS Chr1 13886480 C-T Hetero INTERGENIC
SBS Chr1 14279285 C-A Hetero INTERGENIC
SBS Chr1 20658797 G-T Hetero SYNONYMOUS_CODING
SBS Chr1 22864712 C-T Hetero INTERGENIC
SBS Chr1 28819979 G-T Homo INTERGENIC
SBS Chr1 28819981 C-G Homo INTERGENIC
SBS Chr1 28846130 C-A Hetero INTRON
SBS Chr1 36347207 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g385800
SBS Chr2 7029092 C-T Hetero INTERGENIC
SBS Chr2 20201748 A-T Hetero INTERGENIC
SBS Chr2 20349057 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 28285316 G-A Homo INTERGENIC
SBS Chr2 31617516 G-A Hetero INTERGENIC
SBS Chr2 35117037 T-A Homo NON_SYNONYMOUS_CODING OsKitaake02g367400
SBS Chr2 36351993 G-A Homo INTERGENIC
SBS Chr3 10261280 T-A Hetero INTERGENIC
SBS Chr3 10945430 T-A Hetero INTRON
SBS Chr3 20163763 G-T Hetero INTERGENIC
SBS Chr3 20328580 A-T Homo INTERGENIC
SBS Chr3 26007396 C-T Hetero INTERGENIC
SBS Chr3 32592593 T-C Hetero INTERGENIC
SBS Chr3 34351252 C-A Hetero INTERGENIC
SBS Chr4 1696113 C-G Hetero INTERGENIC
SBS Chr4 3311222 G-A Hetero INTERGENIC
SBS Chr4 8093042 T-A Hetero INTERGENIC
SBS Chr4 8146349 C-T Homo INTERGENIC
SBS Chr4 9422485 G-A Hetero INTERGENIC
SBS Chr4 9597073 C-G Hetero INTERGENIC
SBS Chr4 22021945 T-C Hetero INTERGENIC
SBS Chr4 26931494 G-T Hetero INTERGENIC
SBS Chr5 4963287 A-G Hetero INTERGENIC
SBS Chr5 13743580 G-C Hetero INTERGENIC
SBS Chr5 16856001 C-T Hetero INTERGENIC
SBS Chr5 18143052 G-T Hetero INTERGENIC
SBS Chr5 28109404 G-A Homo INTERGENIC
SBS Chr6 21166193 G-T Hetero INTERGENIC
SBS Chr6 30798158 C-G Hetero INTERGENIC
SBS Chr6 30914162 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g292800
SBS Chr7 6220335 A-G Hetero INTERGENIC
SBS Chr7 10519056 C-A Homo INTERGENIC
SBS Chr7 10519057 T-C Homo INTERGENIC
SBS Chr7 14501756 G-A Hetero INTERGENIC
SBS Chr7 24786242 A-G Hetero INTRON
SBS Chr7 25668326 C-A Hetero INTERGENIC
SBS Chr7 28602256 G-T Hetero INTERGENIC
SBS Chr8 4812583 G-A Hetero INTERGENIC
SBS Chr8 14326442 A-G Hetero INTERGENIC
SBS Chr9 335563 G-A Hetero INTERGENIC
SBS Chr9 8669263 G-A Hetero INTERGENIC
SBS Chr9 11481005 C-T Hetero INTERGENIC
SBS Chr9 11481006 C-T Hetero INTERGENIC
SBS Chr9 11481010 G-T Hetero INTERGENIC
SBS Chr9 12389649 T-C Hetero INTERGENIC
SBS Chr9 16770171 C-T Hetero INTERGENIC
SBS Chr10 15754508 T-A Hetero INTERGENIC
SBS Chr10 15910687 G-A Homo INTERGENIC
SBS Chr11 29484100 C-T Hetero UTR_3_PRIME
SBS Chr12 1023999 G-T Hetero INTERGENIC
SBS Chr12 4207135 G-A Hetero INTERGENIC
SBS Chr12 18268230 G-T Hetero INTERGENIC
SBS Chr12 19323199 T-C Homo INTRON
SBS Chr12 22444833 C-T Hetero INTERGENIC
SBS Chr12 26390667 A-G Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1854912 1854918 6
Deletion Chr9 5130098 5130100 2
Deletion Chr3 6513341 6513342 1
Deletion Chr5 8087404 8087415 11
Deletion Chr11 8261921 8261923 2
Deletion Chr5 8924001 8939000 14999 OsKitaake05g084100
Deletion Chr7 8972193 8972199 6
Deletion Chr8 10308978 10308979 1
Deletion Chr5 13372929 13372937 8
Deletion Chr5 17756160 17756168 8
Deletion Chr6 19436226 19436230 4
Deletion Chr3 28546245 28546248 3
Deletion Chr11 29533928 29533930 2
Deletion Chr2 36352996 36352999 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30609841 30609844 2
Insertion Chr2 34909200 34909203 2
Insertion Chr4 24541816 24541819 2
Insertion Chr10 20650352 20650365 12

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 5037767 Chr1 16707401

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5996444	T-A	Hetero	INTRON
SBS	Chr1	13886480	C-T	Hetero	INTERGENIC
SBS	Chr1	14279285	C-A	Hetero	INTERGENIC
SBS	Chr1	20658797	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	22864712	C-T	Hetero	INTERGENIC
SBS	Chr1	28819979	G-T	Homo	INTERGENIC
SBS	Chr1	28819981	C-G	Homo	INTERGENIC
SBS	Chr1	28846130	C-A	Hetero	INTRON
SBS	Chr1	36347207	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g385800
SBS	Chr2	7029092	C-T	Hetero	INTERGENIC
SBS	Chr2	20201748	A-T	Hetero	INTERGENIC
SBS	Chr2	20349057	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	28285316	G-A	Homo	INTERGENIC
SBS	Chr2	31617516	G-A	Hetero	INTERGENIC
SBS	Chr2	35117037	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g367400
SBS	Chr2	36351993	G-A	Homo	INTERGENIC
SBS	Chr3	10261280	T-A	Hetero	INTERGENIC
SBS	Chr3	10945430	T-A	Hetero	INTRON
SBS	Chr3	20163763	G-T	Hetero	INTERGENIC
SBS	Chr3	20328580	A-T	Homo	INTERGENIC
SBS	Chr3	26007396	C-T	Hetero	INTERGENIC
SBS	Chr3	32592593	T-C	Hetero	INTERGENIC
SBS	Chr3	34351252	C-A	Hetero	INTERGENIC
SBS	Chr4	1696113	C-G	Hetero	INTERGENIC
SBS	Chr4	3311222	G-A	Hetero	INTERGENIC
SBS	Chr4	8093042	T-A	Hetero	INTERGENIC
SBS	Chr4	8146349	C-T	Homo	INTERGENIC
SBS	Chr4	9422485	G-A	Hetero	INTERGENIC
SBS	Chr4	9597073	C-G	Hetero	INTERGENIC
SBS	Chr4	22021945	T-C	Hetero	INTERGENIC
SBS	Chr4	26931494	G-T	Hetero	INTERGENIC
SBS	Chr5	4963287	A-G	Hetero	INTERGENIC
SBS	Chr5	13743580	G-C	Hetero	INTERGENIC
SBS	Chr5	16856001	C-T	Hetero	INTERGENIC
SBS	Chr5	18143052	G-T	Hetero	INTERGENIC
SBS	Chr5	28109404	G-A	Homo	INTERGENIC
SBS	Chr6	21166193	G-T	Hetero	INTERGENIC
SBS	Chr6	30798158	C-G	Hetero	INTERGENIC
SBS	Chr6	30914162	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g292800
SBS	Chr7	6220335	A-G	Hetero	INTERGENIC
SBS	Chr7	10519056	C-A	Homo	INTERGENIC
SBS	Chr7	10519057	T-C	Homo	INTERGENIC
SBS	Chr7	14501756	G-A	Hetero	INTERGENIC
SBS	Chr7	24786242	A-G	Hetero	INTRON
SBS	Chr7	25668326	C-A	Hetero	INTERGENIC
SBS	Chr7	28602256	G-T	Hetero	INTERGENIC
SBS	Chr8	4812583	G-A	Hetero	INTERGENIC
SBS	Chr8	14326442	A-G	Hetero	INTERGENIC
SBS	Chr9	335563	G-A	Hetero	INTERGENIC
SBS	Chr9	8669263	G-A	Hetero	INTERGENIC
SBS	Chr9	11481005	C-T	Hetero	INTERGENIC
SBS	Chr9	11481006	C-T	Hetero	INTERGENIC
SBS	Chr9	11481010	G-T	Hetero	INTERGENIC
SBS	Chr9	12389649	T-C	Hetero	INTERGENIC
SBS	Chr9	16770171	C-T	Hetero	INTERGENIC
SBS	Chr10	15754508	T-A	Hetero	INTERGENIC
SBS	Chr10	15910687	G-A	Homo	INTERGENIC
SBS	Chr11	29484100	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	1023999	G-T	Hetero	INTERGENIC
SBS	Chr12	4207135	G-A	Hetero	INTERGENIC
SBS	Chr12	18268230	G-T	Hetero	INTERGENIC
SBS	Chr12	19323199	T-C	Homo	INTRON
SBS	Chr12	22444833	C-T	Hetero	INTERGENIC
SBS	Chr12	26390667	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1854912	1854918	6
Deletion	Chr9	5130098	5130100	2
Deletion	Chr3	6513341	6513342	1
Deletion	Chr5	8087404	8087415	11
Deletion	Chr11	8261921	8261923	2
Deletion	Chr5	8924001	8939000	14999	OsKitaake05g084100
Deletion	Chr7	8972193	8972199	6
Deletion	Chr8	10308978	10308979	1
Deletion	Chr5	13372929	13372937	8
Deletion	Chr5	17756160	17756168	8
Deletion	Chr6	19436226	19436230	4
Deletion	Chr3	28546245	28546248	3
Deletion	Chr11	29533928	29533930	2
Deletion	Chr2	36352996	36352999	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	5037767	Chr1	16707401

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes