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Mutant Information

Mutant Name	FN2618-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2618-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20514354 G-T Hetero INTERGENIC
SBS Chr2 4973212 A-G Hetero INTERGENIC
SBS Chr2 6371693 C-T Hetero INTRON
SBS Chr2 31448812 T-A Hetero INTERGENIC
SBS Chr2 31535426 G-T Hetero INTERGENIC
SBS Chr2 34376838 C-A Homo UTR_5_PRIME
SBS Chr3 11195121 G-T Hetero SYNONYMOUS_CODING
SBS Chr3 24612989 C-G Hetero INTERGENIC
SBS Chr3 24973383 T-C Hetero INTERGENIC
SBS Chr3 30698500 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g322700
SBS Chr3 31514737 G-T Hetero INTERGENIC
SBS Chr4 56755 G-T Hetero INTERGENIC
SBS Chr4 5433046 A-T Hetero INTERGENIC
SBS Chr4 7302442 G-A Hetero INTERGENIC
SBS Chr4 7302444 G-A Hetero INTERGENIC
SBS Chr4 7302446 C-A Hetero INTERGENIC
SBS Chr4 15486402 G-A Hetero INTERGENIC
SBS Chr4 15719584 C-G Hetero INTERGENIC
SBS Chr4 15996233 G-A Hetero INTERGENIC
SBS Chr4 19314166 G-C Hetero INTERGENIC
SBS Chr4 25752354 C-T Homo INTRON
SBS Chr4 25796149 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g179900
SBS Chr4 27595655 C-T Homo INTERGENIC
SBS Chr4 29136899 A-G Hetero INTERGENIC
SBS Chr4 35941295 T-C Hetero SYNONYMOUS_CODING
SBS Chr5 5828149 G-A Hetero INTERGENIC
SBS Chr6 1372756 G-A Hetero INTERGENIC
SBS Chr6 11195514 A-G Hetero INTERGENIC
SBS Chr6 21404402 G-A Hetero INTERGENIC
SBS Chr7 10318707 G-A Hetero INTERGENIC
SBS Chr7 11463232 G-A Hetero INTERGENIC
SBS Chr7 14675194 T-C Hetero INTERGENIC
SBS Chr7 21180123 G-C Hetero INTERGENIC
SBS Chr7 29408214 G-A Hetero INTERGENIC
SBS Chr8 10224834 G-T Hetero INTERGENIC
SBS Chr8 17191803 A-G Hetero INTERGENIC
SBS Chr8 21799764 G-T Hetero INTERGENIC
SBS Chr8 21799765 G-T Hetero INTERGENIC
SBS Chr8 27719485 C-T Hetero INTERGENIC
SBS Chr9 606722 T-C Hetero INTERGENIC
SBS Chr9 2700437 T-C Hetero INTERGENIC
SBS Chr9 3917427 C-T Hetero INTERGENIC
SBS Chr9 6466994 G-A Hetero INTERGENIC
SBS Chr9 17798006 T-A Homo INTERGENIC
SBS Chr9 21351569 G-C Hetero INTERGENIC
SBS Chr10 6621975 T-C Hetero INTERGENIC
SBS Chr10 8871405 C-T Hetero INTERGENIC
SBS Chr10 9192957 C-G Hetero INTERGENIC
SBS Chr10 14496735 T-A Hetero INTERGENIC
SBS Chr10 19251942 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 2656252 T-A Hetero INTERGENIC
SBS Chr11 7024723 C-A Hetero INTRON
SBS Chr11 7024724 T-A Hetero INTRON
SBS Chr11 7024725 G-A Hetero INTRON
SBS Chr11 11043495 T-C Hetero INTERGENIC
SBS Chr11 12951796 A-T Homo INTERGENIC
SBS Chr11 14525627 G-T Homo INTERGENIC
SBS Chr11 25566184 G-A Hetero INTERGENIC
SBS Chr11 27453030 C-T Hetero INTERGENIC
SBS Chr12 1303744 T-A Hetero SYNONYMOUS_CODING
SBS Chr12 2716443 T-C Hetero INTERGENIC
SBS Chr12 21848193 A-G Hetero INTERGENIC
SBS Chr12 22282961 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2391801 2391802 1
Deletion Chr12 5641521 5641535 14
Deletion Chr6 6083996 6083998 2
Deletion Chr5 7190786 7190789 3
Deletion Chr4 8964001 9223000 258999 10
Deletion Chr4 9236004 9236009 5
Deletion Chr5 11056521 11056522 1
Deletion Chr8 16614520 16614523 3
Deletion Chr2 20242001 20770000 527999 45
Deletion Chr7 28810992 28810993 1
Deletion Chr11 29128332 29128360 28

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21400340 21400343 2
Insertion Chr3 17815998 17816001 2
Insertion Chr4 14142736 14142740 3
Insertion Chr4 29470751 29470755 3
Insertion Chr9 12329911 12329917 5

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 7101564 7363681
Inversion Chr11 15680146 15736687
Inversion Chr11 15680169 15736698
Inversion Chr12 21724218 21906581 OsKitaake12g170400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20514354	G-T	Hetero	INTERGENIC
SBS	Chr2	4973212	A-G	Hetero	INTERGENIC
SBS	Chr2	6371693	C-T	Hetero	INTRON
SBS	Chr2	31448812	T-A	Hetero	INTERGENIC
SBS	Chr2	31535426	G-T	Hetero	INTERGENIC
SBS	Chr2	34376838	C-A	Homo	UTR_5_PRIME
SBS	Chr3	11195121	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	24612989	C-G	Hetero	INTERGENIC
SBS	Chr3	24973383	T-C	Hetero	INTERGENIC
SBS	Chr3	30698500	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g322700
SBS	Chr3	31514737	G-T	Hetero	INTERGENIC
SBS	Chr4	56755	G-T	Hetero	INTERGENIC
SBS	Chr4	5433046	A-T	Hetero	INTERGENIC
SBS	Chr4	7302442	G-A	Hetero	INTERGENIC
SBS	Chr4	7302444	G-A	Hetero	INTERGENIC
SBS	Chr4	7302446	C-A	Hetero	INTERGENIC
SBS	Chr4	15486402	G-A	Hetero	INTERGENIC
SBS	Chr4	15719584	C-G	Hetero	INTERGENIC
SBS	Chr4	15996233	G-A	Hetero	INTERGENIC
SBS	Chr4	19314166	G-C	Hetero	INTERGENIC
SBS	Chr4	25752354	C-T	Homo	INTRON
SBS	Chr4	25796149	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g179900
SBS	Chr4	27595655	C-T	Homo	INTERGENIC
SBS	Chr4	29136899	A-G	Hetero	INTERGENIC
SBS	Chr4	35941295	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr5	5828149	G-A	Hetero	INTERGENIC
SBS	Chr6	1372756	G-A	Hetero	INTERGENIC
SBS	Chr6	11195514	A-G	Hetero	INTERGENIC
SBS	Chr6	21404402	G-A	Hetero	INTERGENIC
SBS	Chr7	10318707	G-A	Hetero	INTERGENIC
SBS	Chr7	11463232	G-A	Hetero	INTERGENIC
SBS	Chr7	14675194	T-C	Hetero	INTERGENIC
SBS	Chr7	21180123	G-C	Hetero	INTERGENIC
SBS	Chr7	29408214	G-A	Hetero	INTERGENIC
SBS	Chr8	10224834	G-T	Hetero	INTERGENIC
SBS	Chr8	17191803	A-G	Hetero	INTERGENIC
SBS	Chr8	21799764	G-T	Hetero	INTERGENIC
SBS	Chr8	21799765	G-T	Hetero	INTERGENIC
SBS	Chr8	27719485	C-T	Hetero	INTERGENIC
SBS	Chr9	606722	T-C	Hetero	INTERGENIC
SBS	Chr9	2700437	T-C	Hetero	INTERGENIC
SBS	Chr9	3917427	C-T	Hetero	INTERGENIC
SBS	Chr9	6466994	G-A	Hetero	INTERGENIC
SBS	Chr9	17798006	T-A	Homo	INTERGENIC
SBS	Chr9	21351569	G-C	Hetero	INTERGENIC
SBS	Chr10	6621975	T-C	Hetero	INTERGENIC
SBS	Chr10	8871405	C-T	Hetero	INTERGENIC
SBS	Chr10	9192957	C-G	Hetero	INTERGENIC
SBS	Chr10	14496735	T-A	Hetero	INTERGENIC
SBS	Chr10	19251942	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	2656252	T-A	Hetero	INTERGENIC
SBS	Chr11	7024723	C-A	Hetero	INTRON
SBS	Chr11	7024724	T-A	Hetero	INTRON
SBS	Chr11	7024725	G-A	Hetero	INTRON
SBS	Chr11	11043495	T-C	Hetero	INTERGENIC
SBS	Chr11	12951796	A-T	Homo	INTERGENIC
SBS	Chr11	14525627	G-T	Homo	INTERGENIC
SBS	Chr11	25566184	G-A	Hetero	INTERGENIC
SBS	Chr11	27453030	C-T	Hetero	INTERGENIC
SBS	Chr12	1303744	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	2716443	T-C	Hetero	INTERGENIC
SBS	Chr12	21848193	A-G	Hetero	INTERGENIC
SBS	Chr12	22282961	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2391801	2391802	1
Deletion	Chr12	5641521	5641535	14
Deletion	Chr6	6083996	6083998	2
Deletion	Chr5	7190786	7190789	3
Deletion	Chr4	8964001	9223000	258999	10
Deletion	Chr4	9236004	9236009	5
Deletion	Chr5	11056521	11056522	1
Deletion	Chr8	16614520	16614523	3
Deletion	Chr2	20242001	20770000	527999	45
Deletion	Chr7	28810992	28810993	1
Deletion	Chr11	29128332	29128360	28

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7101564	7363681
Inversion	Chr11	15680146	15736687
Inversion	Chr11	15680169	15736698
Inversion	Chr12	21724218	21906581	OsKitaake12g170400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes