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Mutant Information

Mutant Name	FN2619-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2619-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 101

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5872802 A-G Hetero INTERGENIC
SBS Chr1 15327446 G-A Hetero INTERGENIC
SBS Chr1 32541186 T-C Hetero INTERGENIC
SBS Chr1 34962361 T-A Hetero INTERGENIC
SBS Chr1 35683190 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g377700
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr2 5594922 A-T Homo UTR_3_PRIME
SBS Chr2 8532489 G-T Hetero INTERGENIC
SBS Chr2 10273723 C-T Hetero INTERGENIC
SBS Chr2 15217555 T-A Hetero INTERGENIC
SBS Chr2 22132349 C-T Hetero INTERGENIC
SBS Chr2 24291810 A-T Hetero INTERGENIC
SBS Chr2 30774742 C-G Hetero INTRON
SBS Chr3 2327676 T-C Hetero INTERGENIC
SBS Chr3 8413535 A-G Hetero INTERGENIC
SBS Chr3 12908474 G-A Hetero INTERGENIC
SBS Chr3 17818779 A-G Hetero INTERGENIC
SBS Chr3 18482176 C-T Hetero INTERGENIC
SBS Chr3 19963469 G-A Hetero INTERGENIC
SBS Chr3 23731249 G-T Hetero INTRON
SBS Chr3 23849595 A-G Hetero INTERGENIC
SBS Chr3 24328928 C-T Hetero INTRON
SBS Chr3 35887195 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 37594547 C-T Hetero INTERGENIC
SBS Chr4 2144707 T-C Hetero INTERGENIC
SBS Chr4 5159650 G-A Homo INTERGENIC
SBS Chr4 5159906 C-G Homo INTERGENIC
SBS Chr4 10799661 C-A Hetero INTERGENIC
SBS Chr4 13750733 G-A Hetero INTERGENIC
SBS Chr4 14561627 A-G Hetero INTERGENIC
SBS Chr4 16082883 G-C Hetero INTERGENIC
SBS Chr4 23215715 A-G Hetero INTERGENIC
SBS Chr4 27042525 A-G Hetero INTERGENIC
SBS Chr4 36705333 A-T Hetero INTERGENIC
SBS Chr4 36705334 T-C Hetero INTERGENIC
SBS Chr5 20551266 C-A Hetero UTR_3_PRIME
SBS Chr5 29877286 T-C Hetero INTERGENIC
SBS Chr6 1587772 A-T Hetero INTERGENIC
SBS Chr6 3111236 T-C Hetero UTR_3_PRIME
SBS Chr6 8788818 G-C Hetero INTERGENIC
SBS Chr6 10120376 C-T Hetero INTRON
SBS Chr6 12621272 A-G Hetero INTERGENIC
SBS Chr6 12623272 G-T Hetero INTRON
SBS Chr6 14277740 C-A Homo INTERGENIC
SBS Chr6 14277741 C-A Homo INTERGENIC
SBS Chr6 15494380 G-A Hetero INTERGENIC
SBS Chr6 18202104 C-A Hetero INTERGENIC
SBS Chr6 21034617 T-C Homo INTERGENIC
SBS Chr7 1602448 G-T Hetero INTRON
SBS Chr7 4945018 G-T Hetero INTERGENIC
SBS Chr7 7182717 G-A Hetero INTERGENIC
SBS Chr7 10755614 C-G Homo INTERGENIC
SBS Chr7 14586305 A-T Hetero INTERGENIC
SBS Chr7 14735401 C-T Hetero INTERGENIC
SBS Chr7 18518525 A-G Hetero INTRON
SBS Chr7 18545725 G-A Homo INTERGENIC
SBS Chr7 19723591 G-A Homo INTERGENIC
SBS Chr7 21365287 A-T Hetero INTERGENIC
SBS Chr7 25790869 C-T Hetero INTERGENIC
SBS Chr7 28670720 T-C Hetero INTERGENIC
SBS Chr8 1340565 C-A Hetero INTERGENIC
SBS Chr8 3160227 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g035800
SBS Chr8 4499626 G-A Hetero INTRON
SBS Chr8 10692870 G-A Hetero INTERGENIC
SBS Chr8 10767412 C-A Hetero INTERGENIC
SBS Chr8 15014779 G-A Hetero INTERGENIC
SBS Chr8 16275976 A-T Hetero INTERGENIC
SBS Chr8 16736128 A-G Hetero INTERGENIC
SBS Chr8 24297640 C-T Hetero INTERGENIC
SBS Chr8 27074043 C-A Homo INTRON
SBS Chr8 29090965 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 1273395 G-T Hetero INTERGENIC
SBS Chr9 7458974 G-T Hetero INTERGENIC
SBS Chr10 1785738 G-A Hetero INTERGENIC
SBS Chr10 2705758 A-T Hetero INTERGENIC
SBS Chr10 2881709 T-A Hetero INTERGENIC
SBS Chr10 5412932 C-A Hetero INTERGENIC
SBS Chr10 10538694 C-T Hetero INTERGENIC
SBS Chr10 11825638 T-G Hetero INTERGENIC
SBS Chr10 12822429 G-A Hetero INTERGENIC
SBS Chr10 13215036 C-G Hetero INTERGENIC
SBS Chr10 13886335 G-A Hetero INTRON
SBS Chr10 18430665 T-C Hetero INTRON
SBS Chr11 9142779 G-A Hetero INTRON
SBS Chr11 9709111 A-G Hetero INTERGENIC
SBS Chr11 12422009 G-A Hetero INTERGENIC
SBS Chr11 14197046 G-A Hetero STOP_GAINED OsKitaake11g118500
SBS Chr11 15956917 G-T Hetero INTERGENIC
SBS Chr11 21251296 C-A Hetero INTERGENIC
SBS Chr11 23569534 C-T Hetero INTERGENIC
SBS Chr11 27232628 T-C Hetero INTERGENIC
SBS Chr11 27467001 T-A Hetero INTERGENIC
SBS Chr11 28746082 C-T Hetero INTERGENIC
SBS Chr12 1856535 C-T Hetero UTR_5_PRIME
SBS Chr12 1857740 G-A Hetero INTRON
SBS Chr12 1857741 A-T Hetero INTRON
SBS Chr12 2120152 G-A Hetero INTERGENIC
SBS Chr12 8288538 A-G Hetero INTERGENIC
SBS Chr12 15471421 T-A Hetero INTERGENIC
SBS Chr12 22564828 T-C Hetero INTERGENIC
SBS Chr12 23296820 C-A Hetero INTERGENIC

Deletions: 34

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 350889 350890 1 OsKitaake11g003100
Deletion Chr12 1275903 1275912 9
Deletion Chr8 2719248 2719257 9
Deletion Chr4 5145001 5160000 14999 OsKitaake04g024900
Deletion Chr9 5570001 5656000 85999 2
Deletion Chr1 5976402 5976403 1
Deletion Chr12 6544132 6544134 2
Deletion Chr5 6876744 6876761 17
Deletion Chr12 7715643 7715645 2
Deletion Chr8 7959848 7959854 6 OsKitaake08g073000
Deletion Chr8 8421264 8421284 20
Deletion Chr5 8606297 8606322 25
Deletion Chr5 8697236 8697237 1
Deletion Chr7 13755670 13755672 2
Deletion Chr6 14673464 14673473 9
Deletion Chr12 15165669 15165671 2
Deletion Chr8 15259614 15259618 4
Deletion Chr12 15344918 15344936 18
Deletion Chr1 16161374 16161376 2
Deletion Chr8 16739662 16739672 10
Deletion Chr5 16760987 16760988 1
Deletion Chr8 16813450 16813470 20
Deletion Chr8 17120605 17120620 15
Deletion Chr3 17490053 17490055 2
Deletion Chr3 17809816 17809826 10
Deletion Chr6 19198150 19198151 1
Deletion Chr2 20402576 20402577 1
Deletion Chr9 21060780 21060784 4
Deletion Chr4 21622606 21622621 15
Deletion Chr4 22510738 22510739 1
Deletion Chr1 22721018 22721020 2
Deletion Chr12 24157012 24157030 18
Deletion Chr5 26813997 26813998 1
Deletion Chr3 32858823 32858824 1

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25903566 25903569 2
Insertion Chr1 41614505 41614508 2
Insertion Chr3 18514318 18514321 2
Insertion Chr6 6847625 6847628 2
Insertion Chr6 19261096 19261098 1
Insertion Chr8 6125921 6125924 2
Insertion Chr9 3536612 3536614 1
Insertion Chr11 26327683 26327689 5
Insertion Chr12 18945752 18945756 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 27737404 27737676
Inversion Chr6 27737494 27737766

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3517865 Chr3 10480777 OsKitaake03g143300
Translocation Chr12 3517867 Chr3 10481223 OsKitaake03g143300
Translocation Chr3 10481236 Chr1 13212598 OsKitaake03g143300
Translocation Chr3 10482409 Chr1 13212617 OsKitaake03g143300
Translocation Chr5 26858691 Chr1 6006023 2
Translocation Chr5 26858693 Chr1 6006022 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5872802	A-G	Hetero	INTERGENIC
SBS	Chr1	15327446	G-A	Hetero	INTERGENIC
SBS	Chr1	32541186	T-C	Hetero	INTERGENIC
SBS	Chr1	34962361	T-A	Hetero	INTERGENIC
SBS	Chr1	35683190	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g377700
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr2	5594922	A-T	Homo	UTR_3_PRIME
SBS	Chr2	8532489	G-T	Hetero	INTERGENIC
SBS	Chr2	10273723	C-T	Hetero	INTERGENIC
SBS	Chr2	15217555	T-A	Hetero	INTERGENIC
SBS	Chr2	22132349	C-T	Hetero	INTERGENIC
SBS	Chr2	24291810	A-T	Hetero	INTERGENIC
SBS	Chr2	30774742	C-G	Hetero	INTRON
SBS	Chr3	2327676	T-C	Hetero	INTERGENIC
SBS	Chr3	8413535	A-G	Hetero	INTERGENIC
SBS	Chr3	12908474	G-A	Hetero	INTERGENIC
SBS	Chr3	17818779	A-G	Hetero	INTERGENIC
SBS	Chr3	18482176	C-T	Hetero	INTERGENIC
SBS	Chr3	19963469	G-A	Hetero	INTERGENIC
SBS	Chr3	23731249	G-T	Hetero	INTRON
SBS	Chr3	23849595	A-G	Hetero	INTERGENIC
SBS	Chr3	24328928	C-T	Hetero	INTRON
SBS	Chr3	35887195	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	37594547	C-T	Hetero	INTERGENIC
SBS	Chr4	2144707	T-C	Hetero	INTERGENIC
SBS	Chr4	5159650	G-A	Homo	INTERGENIC
SBS	Chr4	5159906	C-G	Homo	INTERGENIC
SBS	Chr4	10799661	C-A	Hetero	INTERGENIC
SBS	Chr4	13750733	G-A	Hetero	INTERGENIC
SBS	Chr4	14561627	A-G	Hetero	INTERGENIC
SBS	Chr4	16082883	G-C	Hetero	INTERGENIC
SBS	Chr4	23215715	A-G	Hetero	INTERGENIC
SBS	Chr4	27042525	A-G	Hetero	INTERGENIC
SBS	Chr4	36705333	A-T	Hetero	INTERGENIC
SBS	Chr4	36705334	T-C	Hetero	INTERGENIC
SBS	Chr5	20551266	C-A	Hetero	UTR_3_PRIME
SBS	Chr5	29877286	T-C	Hetero	INTERGENIC
SBS	Chr6	1587772	A-T	Hetero	INTERGENIC
SBS	Chr6	3111236	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	8788818	G-C	Hetero	INTERGENIC
SBS	Chr6	10120376	C-T	Hetero	INTRON
SBS	Chr6	12621272	A-G	Hetero	INTERGENIC
SBS	Chr6	12623272	G-T	Hetero	INTRON
SBS	Chr6	14277740	C-A	Homo	INTERGENIC
SBS	Chr6	14277741	C-A	Homo	INTERGENIC
SBS	Chr6	15494380	G-A	Hetero	INTERGENIC
SBS	Chr6	18202104	C-A	Hetero	INTERGENIC
SBS	Chr6	21034617	T-C	Homo	INTERGENIC
SBS	Chr7	1602448	G-T	Hetero	INTRON
SBS	Chr7	4945018	G-T	Hetero	INTERGENIC
SBS	Chr7	7182717	G-A	Hetero	INTERGENIC
SBS	Chr7	10755614	C-G	Homo	INTERGENIC
SBS	Chr7	14586305	A-T	Hetero	INTERGENIC
SBS	Chr7	14735401	C-T	Hetero	INTERGENIC
SBS	Chr7	18518525	A-G	Hetero	INTRON
SBS	Chr7	18545725	G-A	Homo	INTERGENIC
SBS	Chr7	19723591	G-A	Homo	INTERGENIC
SBS	Chr7	21365287	A-T	Hetero	INTERGENIC
SBS	Chr7	25790869	C-T	Hetero	INTERGENIC
SBS	Chr7	28670720	T-C	Hetero	INTERGENIC
SBS	Chr8	1340565	C-A	Hetero	INTERGENIC
SBS	Chr8	3160227	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g035800
SBS	Chr8	4499626	G-A	Hetero	INTRON
SBS	Chr8	10692870	G-A	Hetero	INTERGENIC
SBS	Chr8	10767412	C-A	Hetero	INTERGENIC
SBS	Chr8	15014779	G-A	Hetero	INTERGENIC
SBS	Chr8	16275976	A-T	Hetero	INTERGENIC
SBS	Chr8	16736128	A-G	Hetero	INTERGENIC
SBS	Chr8	24297640	C-T	Hetero	INTERGENIC
SBS	Chr8	27074043	C-A	Homo	INTRON
SBS	Chr8	29090965	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	1273395	G-T	Hetero	INTERGENIC
SBS	Chr9	7458974	G-T	Hetero	INTERGENIC
SBS	Chr10	1785738	G-A	Hetero	INTERGENIC
SBS	Chr10	2705758	A-T	Hetero	INTERGENIC
SBS	Chr10	2881709	T-A	Hetero	INTERGENIC
SBS	Chr10	5412932	C-A	Hetero	INTERGENIC
SBS	Chr10	10538694	C-T	Hetero	INTERGENIC
SBS	Chr10	11825638	T-G	Hetero	INTERGENIC
SBS	Chr10	12822429	G-A	Hetero	INTERGENIC
SBS	Chr10	13215036	C-G	Hetero	INTERGENIC
SBS	Chr10	13886335	G-A	Hetero	INTRON
SBS	Chr10	18430665	T-C	Hetero	INTRON
SBS	Chr11	9142779	G-A	Hetero	INTRON
SBS	Chr11	9709111	A-G	Hetero	INTERGENIC
SBS	Chr11	12422009	G-A	Hetero	INTERGENIC
SBS	Chr11	14197046	G-A	Hetero	STOP_GAINED	OsKitaake11g118500
SBS	Chr11	15956917	G-T	Hetero	INTERGENIC
SBS	Chr11	21251296	C-A	Hetero	INTERGENIC
SBS	Chr11	23569534	C-T	Hetero	INTERGENIC
SBS	Chr11	27232628	T-C	Hetero	INTERGENIC
SBS	Chr11	27467001	T-A	Hetero	INTERGENIC
SBS	Chr11	28746082	C-T	Hetero	INTERGENIC
SBS	Chr12	1856535	C-T	Hetero	UTR_5_PRIME
SBS	Chr12	1857740	G-A	Hetero	INTRON
SBS	Chr12	1857741	A-T	Hetero	INTRON
SBS	Chr12	2120152	G-A	Hetero	INTERGENIC
SBS	Chr12	8288538	A-G	Hetero	INTERGENIC
SBS	Chr12	15471421	T-A	Hetero	INTERGENIC
SBS	Chr12	22564828	T-C	Hetero	INTERGENIC
SBS	Chr12	23296820	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	350889	350890	1	OsKitaake11g003100
Deletion	Chr12	1275903	1275912	9
Deletion	Chr8	2719248	2719257	9
Deletion	Chr4	5145001	5160000	14999	OsKitaake04g024900
Deletion	Chr9	5570001	5656000	85999	2
Deletion	Chr1	5976402	5976403	1
Deletion	Chr12	6544132	6544134	2
Deletion	Chr5	6876744	6876761	17
Deletion	Chr12	7715643	7715645	2
Deletion	Chr8	7959848	7959854	6	OsKitaake08g073000
Deletion	Chr8	8421264	8421284	20
Deletion	Chr5	8606297	8606322	25
Deletion	Chr5	8697236	8697237	1
Deletion	Chr7	13755670	13755672	2
Deletion	Chr6	14673464	14673473	9
Deletion	Chr12	15165669	15165671	2
Deletion	Chr8	15259614	15259618	4
Deletion	Chr12	15344918	15344936	18
Deletion	Chr1	16161374	16161376	2
Deletion	Chr8	16739662	16739672	10
Deletion	Chr5	16760987	16760988	1
Deletion	Chr8	16813450	16813470	20
Deletion	Chr8	17120605	17120620	15
Deletion	Chr3	17490053	17490055	2
Deletion	Chr3	17809816	17809826	10
Deletion	Chr6	19198150	19198151	1
Deletion	Chr2	20402576	20402577	1
Deletion	Chr9	21060780	21060784	4
Deletion	Chr4	21622606	21622621	15
Deletion	Chr4	22510738	22510739	1
Deletion	Chr1	22721018	22721020	2
Deletion	Chr12	24157012	24157030	18
Deletion	Chr5	26813997	26813998	1
Deletion	Chr3	32858823	32858824	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	27737404	27737676
Inversion	Chr6	27737494	27737766

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes