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Mutant Information

Mutant Name	FN2620-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2620-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 75

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 132068 C-A Hetero INTERGENIC
SBS Chr1 18926290 G-T Hetero INTERGENIC
SBS Chr1 20947013 T-G Hetero INTERGENIC
SBS Chr1 21014175 C-T Hetero INTERGENIC
SBS Chr1 22046593 C-T Homo INTERGENIC
SBS Chr1 26313631 G-A Hetero INTERGENIC
SBS Chr1 26939475 C-T Hetero INTERGENIC
SBS Chr1 36117711 C-A Hetero INTERGENIC
SBS Chr1 38407013 A-T Hetero INTERGENIC
SBS Chr1 43266601 G-T Hetero INTRON
SBS Chr2 6258960 C-T Hetero INTERGENIC
SBS Chr2 10003554 C-T Hetero INTERGENIC
SBS Chr2 32133095 G-T Hetero INTERGENIC
SBS Chr2 33333527 A-T Hetero INTERGENIC
SBS Chr3 276922 G-A Hetero INTERGENIC
SBS Chr3 276923 C-A Hetero INTERGENIC
SBS Chr3 17765782 G-A Hetero INTERGENIC
SBS Chr3 21811085 G-A Hetero INTERGENIC
SBS Chr3 21811086 T-A Hetero INTERGENIC
SBS Chr3 24708479 A-T Hetero INTERGENIC
SBS Chr3 26243187 G-C Hetero INTERGENIC
SBS Chr3 27553469 T-A Hetero INTRON
SBS Chr3 36912545 C-T Hetero INTERGENIC
SBS Chr4 3531727 A-G Hetero INTERGENIC
SBS Chr4 10954352 C-A Hetero INTERGENIC
SBS Chr4 11205874 T-C Hetero INTERGENIC
SBS Chr4 11383627 C-T Hetero INTERGENIC
SBS Chr4 15357966 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 16288971 T-G Hetero INTERGENIC
SBS Chr4 21478568 G-T Homo SYNONYMOUS_CODING
SBS Chr4 35780079 T-A Hetero INTERGENIC
SBS Chr4 36789633 T-A Homo UTR_3_PRIME
SBS Chr5 1613951 C-A Hetero INTERGENIC
SBS Chr5 4459366 T-A Homo INTERGENIC
SBS Chr5 10678369 C-T Hetero INTRON
SBS Chr5 17756693 G-A Hetero INTERGENIC
SBS Chr5 25053823 G-A Hetero INTERGENIC
SBS Chr5 28663920 C-T Hetero INTERGENIC
SBS Chr5 28863308 G-A Hetero INTERGENIC
SBS Chr6 9857835 C-T Hetero INTERGENIC
SBS Chr6 29237037 C-T Hetero INTERGENIC
SBS Chr7 5080527 A-G Hetero INTERGENIC
SBS Chr7 5453163 T-A Homo NON_SYNONYMOUS_CODING OsKitaake07g066400
SBS Chr7 9612445 C-A Homo INTERGENIC
SBS Chr7 10497557 C-T Hetero INTERGENIC
SBS Chr7 10604676 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g101600
SBS Chr7 14375756 A-T Hetero INTERGENIC
SBS Chr7 16679483 T-A Hetero INTERGENIC
SBS Chr7 26407943 C-T Hetero INTERGENIC
SBS Chr8 6124888 G-A Hetero INTERGENIC
SBS Chr8 8853685 A-G Hetero INTERGENIC
SBS Chr8 8962785 C-T Hetero INTERGENIC
SBS Chr8 10246911 G-C Hetero INTERGENIC
SBS Chr8 13917568 T-G Hetero INTERGENIC
SBS Chr8 14389080 G-T Hetero INTERGENIC
SBS Chr8 14389081 G-A Hetero INTERGENIC
SBS Chr9 2973774 G-A Hetero INTERGENIC
SBS Chr9 3276100 C-A Hetero INTERGENIC
SBS Chr9 5839819 G-A Hetero INTRON
SBS Chr9 7285106 C-T Hetero INTRON
SBS Chr9 7969402 G-A Hetero INTERGENIC
SBS Chr9 14471323 C-A Hetero INTERGENIC
SBS Chr10 7017390 C-T Homo INTERGENIC
SBS Chr10 9216486 A-G Hetero INTERGENIC
SBS Chr10 11352375 T-C Homo INTERGENIC
SBS Chr10 17551600 C-G Hetero INTERGENIC
SBS Chr10 21300868 C-T Hetero INTERGENIC
SBS Chr11 15195745 A-G Hetero INTERGENIC
SBS Chr11 19980717 G-A Hetero INTERGENIC
SBS Chr11 19980718 C-T Hetero INTERGENIC
SBS Chr11 26147524 C-T Hetero INTERGENIC
SBS Chr12 6648277 T-C Hetero INTERGENIC
SBS Chr12 13624790 A-G Hetero INTERGENIC
SBS Chr12 18877861 C-T Hetero SPLICE_SITE_DONOR OsKitaake12g139000
SBS Chr12 26804322 G-A Hetero INTERGENIC

Deletions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2343001 2396000 52999 6
Deletion Chr12 2621696 2621723 27
Deletion Chr3 3911950 3911951 1
Deletion Chr2 4741072 4741089 17
Deletion Chr2 6030001 6042000 11999 OsKitaake02g082600
Deletion Chr2 6101001 6112000 10999 3
Deletion Chr9 6179811 6179815 4
Deletion Chr6 8358388 8358415 27
Deletion Chr12 8660171 8660180 9
Deletion Chr11 8792370 8792375 5
Deletion Chr4 9730001 9799000 68999 OsKitaake04g051600
Deletion Chr11 10186001 10369000 182999 5
Deletion Chr10 10858921 10858923 2
Deletion Chr4 11708705 11708715 10 OsKitaake04g056900
Deletion Chr8 12492992 12493014 22
Deletion Chr11 12778299 12778308 9
Deletion Chr12 13057889 13057896 7
Deletion Chr12 13871086 13871092 6
Deletion Chr2 14747241 14747243 2
Deletion Chr5 16117659 16117664 5
Deletion Chr11 16626258 16626261 3
Deletion Chr1 18594001 18642000 47999 3
Deletion Chr12 18963545 18963547 2
Deletion Chr9 21884684 21884686 2
Deletion Chr3 22148494 22148498 4
Deletion Chr12 23824825 23824831 6
Deletion Chr3 23860607 23860609 2
Deletion Chr1 26939690 26939701 11
Deletion Chr2 27098654 27098661 7 OsKitaake02g270500
Deletion Chr1 27361848 27361849 1
Deletion Chr2 32833254 32833255 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41794213 41794216 2
Insertion Chr3 36079112 36079115 2
Insertion Chr6 15251583 15251585 1
Insertion Chr6 20122722 20122725 2
Insertion Chr6 29486115 29486117 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 6030330 6101548
Inversion Chr2 6042565 6111447
Inversion Chr4 9310106 9729412

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	132068	C-A	Hetero	INTERGENIC
SBS	Chr1	18926290	G-T	Hetero	INTERGENIC
SBS	Chr1	20947013	T-G	Hetero	INTERGENIC
SBS	Chr1	21014175	C-T	Hetero	INTERGENIC
SBS	Chr1	22046593	C-T	Homo	INTERGENIC
SBS	Chr1	26313631	G-A	Hetero	INTERGENIC
SBS	Chr1	26939475	C-T	Hetero	INTERGENIC
SBS	Chr1	36117711	C-A	Hetero	INTERGENIC
SBS	Chr1	38407013	A-T	Hetero	INTERGENIC
SBS	Chr1	43266601	G-T	Hetero	INTRON
SBS	Chr2	6258960	C-T	Hetero	INTERGENIC
SBS	Chr2	10003554	C-T	Hetero	INTERGENIC
SBS	Chr2	32133095	G-T	Hetero	INTERGENIC
SBS	Chr2	33333527	A-T	Hetero	INTERGENIC
SBS	Chr3	276922	G-A	Hetero	INTERGENIC
SBS	Chr3	276923	C-A	Hetero	INTERGENIC
SBS	Chr3	17765782	G-A	Hetero	INTERGENIC
SBS	Chr3	21811085	G-A	Hetero	INTERGENIC
SBS	Chr3	21811086	T-A	Hetero	INTERGENIC
SBS	Chr3	24708479	A-T	Hetero	INTERGENIC
SBS	Chr3	26243187	G-C	Hetero	INTERGENIC
SBS	Chr3	27553469	T-A	Hetero	INTRON
SBS	Chr3	36912545	C-T	Hetero	INTERGENIC
SBS	Chr4	3531727	A-G	Hetero	INTERGENIC
SBS	Chr4	10954352	C-A	Hetero	INTERGENIC
SBS	Chr4	11205874	T-C	Hetero	INTERGENIC
SBS	Chr4	11383627	C-T	Hetero	INTERGENIC
SBS	Chr4	15357966	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	16288971	T-G	Hetero	INTERGENIC
SBS	Chr4	21478568	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	35780079	T-A	Hetero	INTERGENIC
SBS	Chr4	36789633	T-A	Homo	UTR_3_PRIME
SBS	Chr5	1613951	C-A	Hetero	INTERGENIC
SBS	Chr5	4459366	T-A	Homo	INTERGENIC
SBS	Chr5	10678369	C-T	Hetero	INTRON
SBS	Chr5	17756693	G-A	Hetero	INTERGENIC
SBS	Chr5	25053823	G-A	Hetero	INTERGENIC
SBS	Chr5	28663920	C-T	Hetero	INTERGENIC
SBS	Chr5	28863308	G-A	Hetero	INTERGENIC
SBS	Chr6	9857835	C-T	Hetero	INTERGENIC
SBS	Chr6	29237037	C-T	Hetero	INTERGENIC
SBS	Chr7	5080527	A-G	Hetero	INTERGENIC
SBS	Chr7	5453163	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g066400
SBS	Chr7	9612445	C-A	Homo	INTERGENIC
SBS	Chr7	10497557	C-T	Hetero	INTERGENIC
SBS	Chr7	10604676	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g101600
SBS	Chr7	14375756	A-T	Hetero	INTERGENIC
SBS	Chr7	16679483	T-A	Hetero	INTERGENIC
SBS	Chr7	26407943	C-T	Hetero	INTERGENIC
SBS	Chr8	6124888	G-A	Hetero	INTERGENIC
SBS	Chr8	8853685	A-G	Hetero	INTERGENIC
SBS	Chr8	8962785	C-T	Hetero	INTERGENIC
SBS	Chr8	10246911	G-C	Hetero	INTERGENIC
SBS	Chr8	13917568	T-G	Hetero	INTERGENIC
SBS	Chr8	14389080	G-T	Hetero	INTERGENIC
SBS	Chr8	14389081	G-A	Hetero	INTERGENIC
SBS	Chr9	2973774	G-A	Hetero	INTERGENIC
SBS	Chr9	3276100	C-A	Hetero	INTERGENIC
SBS	Chr9	5839819	G-A	Hetero	INTRON
SBS	Chr9	7285106	C-T	Hetero	INTRON
SBS	Chr9	7969402	G-A	Hetero	INTERGENIC
SBS	Chr9	14471323	C-A	Hetero	INTERGENIC
SBS	Chr10	7017390	C-T	Homo	INTERGENIC
SBS	Chr10	9216486	A-G	Hetero	INTERGENIC
SBS	Chr10	11352375	T-C	Homo	INTERGENIC
SBS	Chr10	17551600	C-G	Hetero	INTERGENIC
SBS	Chr10	21300868	C-T	Hetero	INTERGENIC
SBS	Chr11	15195745	A-G	Hetero	INTERGENIC
SBS	Chr11	19980717	G-A	Hetero	INTERGENIC
SBS	Chr11	19980718	C-T	Hetero	INTERGENIC
SBS	Chr11	26147524	C-T	Hetero	INTERGENIC
SBS	Chr12	6648277	T-C	Hetero	INTERGENIC
SBS	Chr12	13624790	A-G	Hetero	INTERGENIC
SBS	Chr12	18877861	C-T	Hetero	SPLICE_SITE_DONOR	OsKitaake12g139000
SBS	Chr12	26804322	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2343001	2396000	52999	6
Deletion	Chr12	2621696	2621723	27
Deletion	Chr3	3911950	3911951	1
Deletion	Chr2	4741072	4741089	17
Deletion	Chr2	6030001	6042000	11999	OsKitaake02g082600
Deletion	Chr2	6101001	6112000	10999	3
Deletion	Chr9	6179811	6179815	4
Deletion	Chr6	8358388	8358415	27
Deletion	Chr12	8660171	8660180	9
Deletion	Chr11	8792370	8792375	5
Deletion	Chr4	9730001	9799000	68999	OsKitaake04g051600
Deletion	Chr11	10186001	10369000	182999	5
Deletion	Chr10	10858921	10858923	2
Deletion	Chr4	11708705	11708715	10	OsKitaake04g056900
Deletion	Chr8	12492992	12493014	22
Deletion	Chr11	12778299	12778308	9
Deletion	Chr12	13057889	13057896	7
Deletion	Chr12	13871086	13871092	6
Deletion	Chr2	14747241	14747243	2
Deletion	Chr5	16117659	16117664	5
Deletion	Chr11	16626258	16626261	3
Deletion	Chr1	18594001	18642000	47999	3
Deletion	Chr12	18963545	18963547	2
Deletion	Chr9	21884684	21884686	2
Deletion	Chr3	22148494	22148498	4
Deletion	Chr12	23824825	23824831	6
Deletion	Chr3	23860607	23860609	2
Deletion	Chr1	26939690	26939701	11
Deletion	Chr2	27098654	27098661	7	OsKitaake02g270500
Deletion	Chr1	27361848	27361849	1
Deletion	Chr2	32833254	32833255	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6030330	6101548
Inversion	Chr2	6042565	6111447
Inversion	Chr4	9310106	9729412

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes