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Mutant Information

Mutant Name	FN2621-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2621-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 71

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5430714 G-A Homo INTERGENIC
SBS Chr1 15059116 C-A Hetero INTERGENIC
SBS Chr1 15089952 T-C Hetero INTRON
SBS Chr1 16638984 G-A Hetero INTERGENIC
SBS Chr1 17149384 T-C Hetero INTERGENIC
SBS Chr1 17535353 G-A Hetero INTERGENIC
SBS Chr1 25963375 A-T Hetero INTERGENIC
SBS Chr1 30423863 G-A Hetero INTERGENIC
SBS Chr1 33396065 A-G Hetero INTERGENIC
SBS Chr1 35016413 A-G Hetero INTERGENIC
SBS Chr1 43107305 G-T Hetero INTERGENIC
SBS Chr2 517097 C-T Hetero INTERGENIC
SBS Chr2 3536242 C-G Hetero INTERGENIC
SBS Chr2 4231304 G-A Hetero INTERGENIC
SBS Chr2 7659642 G-C Hetero INTERGENIC
SBS Chr2 11926567 A-C Hetero INTERGENIC
SBS Chr2 17463492 G-A Homo INTRON
SBS Chr2 21172033 G-A Hetero INTERGENIC
SBS Chr2 24158699 C-T Homo INTERGENIC
SBS Chr2 35113822 T-C Homo INTERGENIC
SBS Chr3 675479 G-A Hetero INTRON
SBS Chr3 2833699 G-A Hetero INTERGENIC
SBS Chr3 7848463 A-T Hetero INTERGENIC
SBS Chr3 9085862 T-C Hetero INTERGENIC
SBS Chr3 32144351 C-A Homo INTERGENIC
SBS Chr4 1488284 C-T Hetero INTERGENIC
SBS Chr4 1804230 C-G Hetero INTERGENIC
SBS Chr4 4744382 G-A Hetero INTERGENIC
SBS Chr4 9123375 G-T Hetero INTERGENIC
SBS Chr4 17039710 C-T Hetero INTERGENIC
SBS Chr4 18239051 C-T Hetero INTERGENIC
SBS Chr4 20830671 C-T Hetero INTERGENIC
SBS Chr4 21887437 A-G Hetero INTERGENIC
SBS Chr4 26051098 T-A Hetero UTR_3_PRIME
SBS Chr4 31201850 T-C Homo INTERGENIC
SBS Chr5 14470554 C-T Hetero INTERGENIC
SBS Chr5 18137989 A-T Homo INTERGENIC
SBS Chr5 18137996 T-G Homo INTERGENIC
SBS Chr5 25619697 C-T Hetero INTERGENIC
SBS Chr6 6722655 T-C Hetero INTERGENIC
SBS Chr6 7850368 A-G Hetero INTERGENIC
SBS Chr7 2790604 G-A Hetero INTERGENIC
SBS Chr7 6142143 G-A Hetero INTERGENIC
SBS Chr7 14375989 G-A Hetero INTERGENIC
SBS Chr7 15672015 G-A Hetero INTERGENIC
SBS Chr7 27227265 C-T Hetero INTERGENIC
SBS Chr8 6564265 C-T Hetero INTERGENIC
SBS Chr8 15523913 C-T Hetero UTR_5_PRIME
SBS Chr8 19637649 C-T Homo INTERGENIC
SBS Chr9 6901798 C-A Hetero INTERGENIC
SBS Chr9 7697408 G-T Hetero INTERGENIC
SBS Chr10 2736650 G-C Homo INTERGENIC
SBS Chr10 4921691 A-T Homo INTERGENIC
SBS Chr10 9197684 G-A Hetero INTERGENIC
SBS Chr10 11117879 C-T Hetero INTERGENIC
SBS Chr11 1345229 G-T Hetero INTERGENIC
SBS Chr11 25756279 G-A Homo INTERGENIC
SBS Chr12 447914 A-G Hetero INTERGENIC
SBS Chr12 447915 A-T Hetero INTERGENIC
SBS Chr12 713587 A-T Hetero INTERGENIC
SBS Chr12 2813046 A-T Hetero SYNONYMOUS_CODING
SBS Chr12 2813048 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g042200
SBS Chr12 2884350 C-T Hetero INTERGENIC
SBS Chr12 5927631 C-T Hetero INTERGENIC
SBS Chr12 13318066 G-A Hetero INTERGENIC
SBS Chr12 15592041 T-C Hetero INTERGENIC
SBS Chr12 15999994 T-C Hetero INTERGENIC
SBS Chr12 18225740 G-A Hetero INTRON
SBS Chr12 24342256 G-A Hetero INTERGENIC
SBS Chr12 24342257 C-A Hetero INTERGENIC
SBS Chr12 24673958 T-C Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 220007 220012 5
Deletion Chr5 3251672 3251674 2
Deletion Chr5 3471692 3471694 2
Deletion Chr1 4461082 4461089 7
Deletion Chr5 4921136 4921144 8
Deletion Chr1 5442162 5442165 3
Deletion Chr1 8159001 8253000 93999 7
Deletion Chr4 8423282 8423288 6
Deletion Chr12 9760449 9760453 4
Deletion Chr7 11126323 11126324 1
Deletion Chr10 11206254 11206270 16
Deletion Chr3 13396143 13396144 1
Deletion Chr1 14231263 14231265 2
Deletion Chr6 15183306 15183307 1
Deletion Chr7 15564754 15564757 3
Deletion Chr2 17625544 17625564 20
Deletion Chr1 18319526 18319528 2
Deletion Chr1 18913163 18913172 9
Deletion Chr1 18998619 18998623 4
Deletion Chr1 19198000 19198001 1
Deletion Chr11 19517307 19517319 12
Deletion Chr4 20919977 20919979 2
Deletion Chr3 23412400 23412401 1 OsKitaake03g252200
Deletion Chr5 26639760 26639763 3 OsKitaake05g237700
Deletion Chr8 27243575 27243583 8
Deletion Chr7 28238109 28238111 2
Deletion Chr8 28597122 28597134 12 OsKitaake08g245200
Deletion Chr5 30117368 30117369 1
Deletion Chr6 30785018 30785025 7
Deletion Chr2 36131240 36131241 1

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43431302 43431305 2
Insertion Chr2 5219404 5219407 2
Insertion Chr3 28944102 28944105 2
Insertion Chr6 22816774 22816777 2
Insertion Chr7 1377557 1377564 6
Insertion Chr8 19115960 19115963 2
Insertion Chr8 24269499 24269502 2
Insertion Chr10 7751533 7751536 2
Insertion Chr10 12436091 12436094 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 8000039 8318393
Inversion Chr6 8454869 8860590
Inversion Chr6 8454878 8850436

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 8586403 Chr1 4639399

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5430714	G-A	Homo	INTERGENIC
SBS	Chr1	15059116	C-A	Hetero	INTERGENIC
SBS	Chr1	15089952	T-C	Hetero	INTRON
SBS	Chr1	16638984	G-A	Hetero	INTERGENIC
SBS	Chr1	17149384	T-C	Hetero	INTERGENIC
SBS	Chr1	17535353	G-A	Hetero	INTERGENIC
SBS	Chr1	25963375	A-T	Hetero	INTERGENIC
SBS	Chr1	30423863	G-A	Hetero	INTERGENIC
SBS	Chr1	33396065	A-G	Hetero	INTERGENIC
SBS	Chr1	35016413	A-G	Hetero	INTERGENIC
SBS	Chr1	43107305	G-T	Hetero	INTERGENIC
SBS	Chr2	517097	C-T	Hetero	INTERGENIC
SBS	Chr2	3536242	C-G	Hetero	INTERGENIC
SBS	Chr2	4231304	G-A	Hetero	INTERGENIC
SBS	Chr2	7659642	G-C	Hetero	INTERGENIC
SBS	Chr2	11926567	A-C	Hetero	INTERGENIC
SBS	Chr2	17463492	G-A	Homo	INTRON
SBS	Chr2	21172033	G-A	Hetero	INTERGENIC
SBS	Chr2	24158699	C-T	Homo	INTERGENIC
SBS	Chr2	35113822	T-C	Homo	INTERGENIC
SBS	Chr3	675479	G-A	Hetero	INTRON
SBS	Chr3	2833699	G-A	Hetero	INTERGENIC
SBS	Chr3	7848463	A-T	Hetero	INTERGENIC
SBS	Chr3	9085862	T-C	Hetero	INTERGENIC
SBS	Chr3	32144351	C-A	Homo	INTERGENIC
SBS	Chr4	1488284	C-T	Hetero	INTERGENIC
SBS	Chr4	1804230	C-G	Hetero	INTERGENIC
SBS	Chr4	4744382	G-A	Hetero	INTERGENIC
SBS	Chr4	9123375	G-T	Hetero	INTERGENIC
SBS	Chr4	17039710	C-T	Hetero	INTERGENIC
SBS	Chr4	18239051	C-T	Hetero	INTERGENIC
SBS	Chr4	20830671	C-T	Hetero	INTERGENIC
SBS	Chr4	21887437	A-G	Hetero	INTERGENIC
SBS	Chr4	26051098	T-A	Hetero	UTR_3_PRIME
SBS	Chr4	31201850	T-C	Homo	INTERGENIC
SBS	Chr5	14470554	C-T	Hetero	INTERGENIC
SBS	Chr5	18137989	A-T	Homo	INTERGENIC
SBS	Chr5	18137996	T-G	Homo	INTERGENIC
SBS	Chr5	25619697	C-T	Hetero	INTERGENIC
SBS	Chr6	6722655	T-C	Hetero	INTERGENIC
SBS	Chr6	7850368	A-G	Hetero	INTERGENIC
SBS	Chr7	2790604	G-A	Hetero	INTERGENIC
SBS	Chr7	6142143	G-A	Hetero	INTERGENIC
SBS	Chr7	14375989	G-A	Hetero	INTERGENIC
SBS	Chr7	15672015	G-A	Hetero	INTERGENIC
SBS	Chr7	27227265	C-T	Hetero	INTERGENIC
SBS	Chr8	6564265	C-T	Hetero	INTERGENIC
SBS	Chr8	15523913	C-T	Hetero	UTR_5_PRIME
SBS	Chr8	19637649	C-T	Homo	INTERGENIC
SBS	Chr9	6901798	C-A	Hetero	INTERGENIC
SBS	Chr9	7697408	G-T	Hetero	INTERGENIC
SBS	Chr10	2736650	G-C	Homo	INTERGENIC
SBS	Chr10	4921691	A-T	Homo	INTERGENIC
SBS	Chr10	9197684	G-A	Hetero	INTERGENIC
SBS	Chr10	11117879	C-T	Hetero	INTERGENIC
SBS	Chr11	1345229	G-T	Hetero	INTERGENIC
SBS	Chr11	25756279	G-A	Homo	INTERGENIC
SBS	Chr12	447914	A-G	Hetero	INTERGENIC
SBS	Chr12	447915	A-T	Hetero	INTERGENIC
SBS	Chr12	713587	A-T	Hetero	INTERGENIC
SBS	Chr12	2813046	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	2813048	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g042200
SBS	Chr12	2884350	C-T	Hetero	INTERGENIC
SBS	Chr12	5927631	C-T	Hetero	INTERGENIC
SBS	Chr12	13318066	G-A	Hetero	INTERGENIC
SBS	Chr12	15592041	T-C	Hetero	INTERGENIC
SBS	Chr12	15999994	T-C	Hetero	INTERGENIC
SBS	Chr12	18225740	G-A	Hetero	INTRON
SBS	Chr12	24342256	G-A	Hetero	INTERGENIC
SBS	Chr12	24342257	C-A	Hetero	INTERGENIC
SBS	Chr12	24673958	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	220007	220012	5
Deletion	Chr5	3251672	3251674	2
Deletion	Chr5	3471692	3471694	2
Deletion	Chr1	4461082	4461089	7
Deletion	Chr5	4921136	4921144	8
Deletion	Chr1	5442162	5442165	3
Deletion	Chr1	8159001	8253000	93999	7
Deletion	Chr4	8423282	8423288	6
Deletion	Chr12	9760449	9760453	4
Deletion	Chr7	11126323	11126324	1
Deletion	Chr10	11206254	11206270	16
Deletion	Chr3	13396143	13396144	1
Deletion	Chr1	14231263	14231265	2
Deletion	Chr6	15183306	15183307	1
Deletion	Chr7	15564754	15564757	3
Deletion	Chr2	17625544	17625564	20
Deletion	Chr1	18319526	18319528	2
Deletion	Chr1	18913163	18913172	9
Deletion	Chr1	18998619	18998623	4
Deletion	Chr1	19198000	19198001	1
Deletion	Chr11	19517307	19517319	12
Deletion	Chr4	20919977	20919979	2
Deletion	Chr3	23412400	23412401	1	OsKitaake03g252200
Deletion	Chr5	26639760	26639763	3	OsKitaake05g237700
Deletion	Chr8	27243575	27243583	8
Deletion	Chr7	28238109	28238111	2
Deletion	Chr8	28597122	28597134	12	OsKitaake08g245200
Deletion	Chr5	30117368	30117369	1
Deletion	Chr6	30785018	30785025	7
Deletion	Chr2	36131240	36131241	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	8000039	8318393
Inversion	Chr6	8454869	8860590
Inversion	Chr6	8454878	8850436

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes