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Mutant Information

Mutant Name	FN2622-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2622-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7474899 A-C Homo NON_SYNONYMOUS_CODING OsKitaake01g093600
SBS Chr1 19554540 C-G Hetero INTERGENIC
SBS Chr1 24805119 T-A Hetero INTRON
SBS Chr1 26349101 A-G Hetero INTERGENIC
SBS Chr1 27752396 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g269100
SBS Chr1 42083001 T-G Hetero INTERGENIC
SBS Chr1 42934391 T-A Hetero INTERGENIC
SBS Chr2 1221666 A-T Homo INTRON
SBS Chr2 21418482 A-T Hetero INTERGENIC
SBS Chr2 32553718 C-T Hetero UTR_5_PRIME
SBS Chr3 19355117 C-G Homo INTERGENIC
SBS Chr3 26106876 G-A Homo INTERGENIC
SBS Chr3 28244088 T-A Hetero INTERGENIC
SBS Chr3 32932964 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g349900
SBS Chr3 33681682 C-A Hetero UTR_5_PRIME
SBS Chr3 34151340 G-A Hetero INTERGENIC
SBS Chr3 34151342 C-A Hetero INTERGENIC
SBS Chr3 34151344 T-A Hetero INTERGENIC
SBS Chr4 6534864 G-A Hetero INTERGENIC
SBS Chr4 11610333 A-C Hetero INTERGENIC
SBS Chr4 12694542 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g209300
SBS Chr4 14145559 A-G Hetero INTERGENIC
SBS Chr4 14620995 C-G Hetero INTRON
SBS Chr4 20216286 T-C Hetero INTERGENIC
SBS Chr4 21176620 G-T Hetero INTERGENIC
SBS Chr4 28157004 G-A Hetero INTERGENIC
SBS Chr5 30139656 C-A Hetero INTERGENIC
SBS Chr6 6534950 G-A Hetero INTERGENIC
SBS Chr6 14831901 G-A Homo INTERGENIC
SBS Chr6 21731126 G-A Homo UTR_5_PRIME
SBS Chr6 27265843 G-T Hetero INTRON
SBS Chr6 27265844 C-T Hetero INTRON
SBS Chr6 27265845 A-T Hetero INTRON
SBS Chr7 20114587 A-G Hetero INTERGENIC
SBS Chr7 25601739 G-T Hetero UTR_3_PRIME
SBS Chr8 10232969 A-G Hetero INTERGENIC
SBS Chr9 1032959 T-A Hetero INTERGENIC
SBS Chr9 1032960 G-T Hetero INTERGENIC
SBS Chr9 8833900 A-G Hetero INTERGENIC
SBS Chr10 4728647 G-C Homo INTERGENIC
SBS Chr10 18560613 C-T Hetero INTERGENIC
SBS Chr10 22201320 G-A Hetero INTERGENIC
SBS Chr11 4818830 G-A Hetero INTERGENIC
SBS Chr11 4818831 T-A Hetero INTERGENIC
SBS Chr11 18597677 A-G Homo INTERGENIC
SBS Chr12 24317201 G-T Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 716230 716233 3
Deletion Chr6 1574037 1574038 1
Deletion Chr1 1928275 1928513 238
Deletion Chr5 2212369 2212373 4
Deletion Chr1 2578001 2668000 89999 15
Deletion Chr11 3922286 3922292 6
Deletion Chr5 8659001 8667000 7999
Deletion Chr9 8859826 8859845 19
Deletion Chr2 9801835 9801838 3
Deletion Chr12 9926908 9926910 2
Deletion Chr5 11490893 11490896 3
Deletion Chr6 12044915 12044925 10
Deletion Chr8 12846001 12908000 61999
Deletion Chr12 13204708 13204735 27
Deletion Chr6 16689689 16689692 3
Deletion Chr11 18120090 18120099 9
Deletion Chr5 19920006 19920008 2
Deletion Chr5 22250374 22250380 6
Deletion Chr4 27790056 27790061 5
Deletion Chr1 28192082 28192101 19
Deletion Chr1 30660301 30660323 22
Deletion Chr3 34158921 34158932 11
Deletion Chr4 34789637 34789649 12
Deletion Chr1 41656013 41656030 17
Deletion Chr1 42826308 42826316 8 OsKitaake01g472000

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 7442835 7442838 2
Insertion Chr5 20675620 20675623 2
Insertion Chr6 3775205 3775208 2
Insertion Chr7 26247975 26247978 2
Insertion Chr10 14195582 14195587 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 27750001 27783424 OsKitaake01g269000
Inversion Chr1 27750010 27783427 OsKitaake01g269000
Inversion Chr3 32130956 32777673 2
Inversion Chr3 32139243 32541484

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 19107620 Chr6 1152303 OsKitaake10g137500
Translocation Chr10 19281626 Chr6 1152298 OsKitaake10g139300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7474899	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g093600
SBS	Chr1	19554540	C-G	Hetero	INTERGENIC
SBS	Chr1	24805119	T-A	Hetero	INTRON
SBS	Chr1	26349101	A-G	Hetero	INTERGENIC
SBS	Chr1	27752396	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g269100
SBS	Chr1	42083001	T-G	Hetero	INTERGENIC
SBS	Chr1	42934391	T-A	Hetero	INTERGENIC
SBS	Chr2	1221666	A-T	Homo	INTRON
SBS	Chr2	21418482	A-T	Hetero	INTERGENIC
SBS	Chr2	32553718	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	19355117	C-G	Homo	INTERGENIC
SBS	Chr3	26106876	G-A	Homo	INTERGENIC
SBS	Chr3	28244088	T-A	Hetero	INTERGENIC
SBS	Chr3	32932964	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g349900
SBS	Chr3	33681682	C-A	Hetero	UTR_5_PRIME
SBS	Chr3	34151340	G-A	Hetero	INTERGENIC
SBS	Chr3	34151342	C-A	Hetero	INTERGENIC
SBS	Chr3	34151344	T-A	Hetero	INTERGENIC
SBS	Chr4	6534864	G-A	Hetero	INTERGENIC
SBS	Chr4	11610333	A-C	Hetero	INTERGENIC
SBS	Chr4	12694542	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g209300
SBS	Chr4	14145559	A-G	Hetero	INTERGENIC
SBS	Chr4	14620995	C-G	Hetero	INTRON
SBS	Chr4	20216286	T-C	Hetero	INTERGENIC
SBS	Chr4	21176620	G-T	Hetero	INTERGENIC
SBS	Chr4	28157004	G-A	Hetero	INTERGENIC
SBS	Chr5	30139656	C-A	Hetero	INTERGENIC
SBS	Chr6	6534950	G-A	Hetero	INTERGENIC
SBS	Chr6	14831901	G-A	Homo	INTERGENIC
SBS	Chr6	21731126	G-A	Homo	UTR_5_PRIME
SBS	Chr6	27265843	G-T	Hetero	INTRON
SBS	Chr6	27265844	C-T	Hetero	INTRON
SBS	Chr6	27265845	A-T	Hetero	INTRON
SBS	Chr7	20114587	A-G	Hetero	INTERGENIC
SBS	Chr7	25601739	G-T	Hetero	UTR_3_PRIME
SBS	Chr8	10232969	A-G	Hetero	INTERGENIC
SBS	Chr9	1032959	T-A	Hetero	INTERGENIC
SBS	Chr9	1032960	G-T	Hetero	INTERGENIC
SBS	Chr9	8833900	A-G	Hetero	INTERGENIC
SBS	Chr10	4728647	G-C	Homo	INTERGENIC
SBS	Chr10	18560613	C-T	Hetero	INTERGENIC
SBS	Chr10	22201320	G-A	Hetero	INTERGENIC
SBS	Chr11	4818830	G-A	Hetero	INTERGENIC
SBS	Chr11	4818831	T-A	Hetero	INTERGENIC
SBS	Chr11	18597677	A-G	Homo	INTERGENIC
SBS	Chr12	24317201	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	716230	716233	3
Deletion	Chr6	1574037	1574038	1
Deletion	Chr1	1928275	1928513	238
Deletion	Chr5	2212369	2212373	4
Deletion	Chr1	2578001	2668000	89999	15
Deletion	Chr11	3922286	3922292	6
Deletion	Chr5	8659001	8667000	7999
Deletion	Chr9	8859826	8859845	19
Deletion	Chr2	9801835	9801838	3
Deletion	Chr12	9926908	9926910	2
Deletion	Chr5	11490893	11490896	3
Deletion	Chr6	12044915	12044925	10
Deletion	Chr8	12846001	12908000	61999
Deletion	Chr12	13204708	13204735	27
Deletion	Chr6	16689689	16689692	3
Deletion	Chr11	18120090	18120099	9
Deletion	Chr5	19920006	19920008	2
Deletion	Chr5	22250374	22250380	6
Deletion	Chr4	27790056	27790061	5
Deletion	Chr1	28192082	28192101	19
Deletion	Chr1	30660301	30660323	22
Deletion	Chr3	34158921	34158932	11
Deletion	Chr4	34789637	34789649	12
Deletion	Chr1	41656013	41656030	17
Deletion	Chr1	42826308	42826316	8	OsKitaake01g472000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	27750001	27783424	OsKitaake01g269000
Inversion	Chr1	27750010	27783427	OsKitaake01g269000
Inversion	Chr3	32130956	32777673	2
Inversion	Chr3	32139243	32541484

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes