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Mutant Information

Mutant Name	FN2625-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2625-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 74

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 628675 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 6417748 C-T Hetero INTERGENIC
SBS Chr1 13663357 G-A Hetero INTERGENIC
SBS Chr1 17308412 C-G Homo INTERGENIC
SBS Chr1 31869852 A-G Hetero INTERGENIC
SBS Chr1 32670289 C-T Homo UTR_3_PRIME
SBS Chr2 313803 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g004400
SBS Chr2 896602 G-A Hetero INTRON
SBS Chr2 15300068 C-A Hetero INTERGENIC
SBS Chr2 20547134 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g200000
SBS Chr2 20547135 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g200000
SBS Chr2 20611633 G-A Hetero INTERGENIC
SBS Chr2 29301959 G-A Hetero INTERGENIC
SBS Chr2 29914313 T-A Homo INTERGENIC
SBS Chr3 5149979 A-C Hetero INTERGENIC
SBS Chr3 15565500 G-A Hetero INTERGENIC
SBS Chr3 18557434 A-T Hetero INTERGENIC
SBS Chr3 20295273 C-T Hetero INTERGENIC
SBS Chr3 22037371 T-C Homo INTERGENIC
SBS Chr3 27483502 G-A Hetero INTRON
SBS Chr3 29375992 T-C Hetero INTERGENIC
SBS Chr3 36628519 C-T Hetero INTERGENIC
SBS Chr4 4341987 C-G Hetero INTERGENIC
SBS Chr4 8348555 T-C Hetero INTERGENIC
SBS Chr4 11008422 G-A Hetero INTERGENIC
SBS Chr4 15504288 G-A Hetero INTERGENIC
SBS Chr4 21915250 C-T Hetero INTERGENIC
SBS Chr4 28398084 A-G Hetero INTERGENIC
SBS Chr4 30917566 C-T Hetero INTERGENIC
SBS Chr4 32375704 T-C Hetero INTERGENIC
SBS Chr5 5673229 G-A Hetero INTERGENIC
SBS Chr5 5758446 G-T Hetero INTERGENIC
SBS Chr5 7087833 G-T Hetero INTERGENIC
SBS Chr5 7160612 T-C Hetero INTERGENIC
SBS Chr5 11718882 C-T Hetero INTERGENIC
SBS Chr5 18412041 T-C Hetero INTERGENIC
SBS Chr5 19494859 A-T Hetero INTERGENIC
SBS Chr5 22206321 T-C Hetero INTERGENIC
SBS Chr5 23740616 C-T Homo INTERGENIC
SBS Chr5 30101883 T-A Hetero #VALUE!
SBS Chr6 5108123 C-T Hetero INTERGENIC
SBS Chr6 5790251 G-C Hetero INTERGENIC
SBS Chr6 10990804 A-G Homo INTERGENIC
SBS Chr6 12655839 C-G Homo UTR_5_PRIME
SBS Chr6 12759571 T-A Homo INTERGENIC
SBS Chr6 13128282 A-G Homo INTERGENIC
SBS Chr6 28734506 C-T Hetero INTERGENIC
SBS Chr6 29184207 C-T Hetero INTRON
SBS Chr6 29383058 G-A Hetero INTERGENIC
SBS Chr7 4755746 T-C Homo INTERGENIC
SBS Chr7 29126150 G-A Hetero INTERGENIC
SBS Chr8 4356175 G-A Hetero INTERGENIC
SBS Chr8 5630982 C-T Hetero INTERGENIC
SBS Chr8 6596094 G-A Hetero INTERGENIC
SBS Chr8 9103903 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 17289422 T-G Hetero INTERGENIC
SBS Chr9 4783179 C-G Hetero INTERGENIC
SBS Chr9 4783215 G-C Hetero INTERGENIC
SBS Chr9 16388250 T-C Hetero INTERGENIC
SBS Chr9 19636379 A-T Hetero INTERGENIC
SBS Chr10 8759852 T-C Homo INTERGENIC
SBS Chr10 8759865 T-C Homo INTERGENIC
SBS Chr10 17294582 T-C Hetero INTERGENIC
SBS Chr11 4504297 G-A Hetero INTERGENIC
SBS Chr11 16386021 C-T Homo SYNONYMOUS_CODING
SBS Chr11 17613044 T-G Hetero INTERGENIC
SBS Chr11 17753583 G-C Hetero INTERGENIC
SBS Chr11 18363434 T-C Hetero INTERGENIC
SBS Chr11 18475435 C-T Hetero INTERGENIC
SBS Chr11 24488420 G-A Hetero INTERGENIC
SBS Chr11 25119248 C-T Homo INTERGENIC
SBS Chr12 6095389 T-G Homo INTERGENIC
SBS Chr12 12984582 G-A Hetero INTERGENIC
SBS Chr12 20238942 T-C Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1205269 1205278 9 OsKitaake02g018100
Deletion Chr11 1855557 1855558 1
Deletion Chr2 2917266 2917275 9
Deletion Chr12 6903938 6903940 2
Deletion Chr4 8075105 8075109 4
Deletion Chr4 8193539 8193540 1
Deletion Chr10 8759586 8759588 2
Deletion Chr6 10271666 10271669 3
Deletion Chr10 13265001 14036000 770999 73
Deletion Chr3 15342486 15342492 6
Deletion Chr9 16070001 16075000 4999
Deletion Chr9 17647274 17647276 2
Deletion Chr9 18507393 18507395 2
Deletion Chr3 19295001 19340000 44999
Deletion Chr3 20955010 20955012 2
Deletion Chr1 32623813 32623822 9
Deletion Chr3 34477597 34477598 1
Deletion Chr1 40792008 40792009 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 956937 956940 2
Insertion Chr5 23989493 23989517 23
Insertion Chr10 22079356 22079359 2
Insertion Chr11 7974406 7974409 2
Insertion Chr11 17818623 17818625 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 16069567 16076925

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 14036309 Chr3 19296537 OsKitaake10g087000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	628675	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	6417748	C-T	Hetero	INTERGENIC
SBS	Chr1	13663357	G-A	Hetero	INTERGENIC
SBS	Chr1	17308412	C-G	Homo	INTERGENIC
SBS	Chr1	31869852	A-G	Hetero	INTERGENIC
SBS	Chr1	32670289	C-T	Homo	UTR_3_PRIME
SBS	Chr2	313803	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g004400
SBS	Chr2	896602	G-A	Hetero	INTRON
SBS	Chr2	15300068	C-A	Hetero	INTERGENIC
SBS	Chr2	20547134	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g200000
SBS	Chr2	20547135	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g200000
SBS	Chr2	20611633	G-A	Hetero	INTERGENIC
SBS	Chr2	29301959	G-A	Hetero	INTERGENIC
SBS	Chr2	29914313	T-A	Homo	INTERGENIC
SBS	Chr3	5149979	A-C	Hetero	INTERGENIC
SBS	Chr3	15565500	G-A	Hetero	INTERGENIC
SBS	Chr3	18557434	A-T	Hetero	INTERGENIC
SBS	Chr3	20295273	C-T	Hetero	INTERGENIC
SBS	Chr3	22037371	T-C	Homo	INTERGENIC
SBS	Chr3	27483502	G-A	Hetero	INTRON
SBS	Chr3	29375992	T-C	Hetero	INTERGENIC
SBS	Chr3	36628519	C-T	Hetero	INTERGENIC
SBS	Chr4	4341987	C-G	Hetero	INTERGENIC
SBS	Chr4	8348555	T-C	Hetero	INTERGENIC
SBS	Chr4	11008422	G-A	Hetero	INTERGENIC
SBS	Chr4	15504288	G-A	Hetero	INTERGENIC
SBS	Chr4	21915250	C-T	Hetero	INTERGENIC
SBS	Chr4	28398084	A-G	Hetero	INTERGENIC
SBS	Chr4	30917566	C-T	Hetero	INTERGENIC
SBS	Chr4	32375704	T-C	Hetero	INTERGENIC
SBS	Chr5	5673229	G-A	Hetero	INTERGENIC
SBS	Chr5	5758446	G-T	Hetero	INTERGENIC
SBS	Chr5	7087833	G-T	Hetero	INTERGENIC
SBS	Chr5	7160612	T-C	Hetero	INTERGENIC
SBS	Chr5	11718882	C-T	Hetero	INTERGENIC
SBS	Chr5	18412041	T-C	Hetero	INTERGENIC
SBS	Chr5	19494859	A-T	Hetero	INTERGENIC
SBS	Chr5	22206321	T-C	Hetero	INTERGENIC
SBS	Chr5	23740616	C-T	Homo	INTERGENIC
SBS	Chr5	30101883	T-A	Hetero	#VALUE!
SBS	Chr6	5108123	C-T	Hetero	INTERGENIC
SBS	Chr6	5790251	G-C	Hetero	INTERGENIC
SBS	Chr6	10990804	A-G	Homo	INTERGENIC
SBS	Chr6	12655839	C-G	Homo	UTR_5_PRIME
SBS	Chr6	12759571	T-A	Homo	INTERGENIC
SBS	Chr6	13128282	A-G	Homo	INTERGENIC
SBS	Chr6	28734506	C-T	Hetero	INTERGENIC
SBS	Chr6	29184207	C-T	Hetero	INTRON
SBS	Chr6	29383058	G-A	Hetero	INTERGENIC
SBS	Chr7	4755746	T-C	Homo	INTERGENIC
SBS	Chr7	29126150	G-A	Hetero	INTERGENIC
SBS	Chr8	4356175	G-A	Hetero	INTERGENIC
SBS	Chr8	5630982	C-T	Hetero	INTERGENIC
SBS	Chr8	6596094	G-A	Hetero	INTERGENIC
SBS	Chr8	9103903	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	17289422	T-G	Hetero	INTERGENIC
SBS	Chr9	4783179	C-G	Hetero	INTERGENIC
SBS	Chr9	4783215	G-C	Hetero	INTERGENIC
SBS	Chr9	16388250	T-C	Hetero	INTERGENIC
SBS	Chr9	19636379	A-T	Hetero	INTERGENIC
SBS	Chr10	8759852	T-C	Homo	INTERGENIC
SBS	Chr10	8759865	T-C	Homo	INTERGENIC
SBS	Chr10	17294582	T-C	Hetero	INTERGENIC
SBS	Chr11	4504297	G-A	Hetero	INTERGENIC
SBS	Chr11	16386021	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	17613044	T-G	Hetero	INTERGENIC
SBS	Chr11	17753583	G-C	Hetero	INTERGENIC
SBS	Chr11	18363434	T-C	Hetero	INTERGENIC
SBS	Chr11	18475435	C-T	Hetero	INTERGENIC
SBS	Chr11	24488420	G-A	Hetero	INTERGENIC
SBS	Chr11	25119248	C-T	Homo	INTERGENIC
SBS	Chr12	6095389	T-G	Homo	INTERGENIC
SBS	Chr12	12984582	G-A	Hetero	INTERGENIC
SBS	Chr12	20238942	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1205269	1205278	9	OsKitaake02g018100
Deletion	Chr11	1855557	1855558	1
Deletion	Chr2	2917266	2917275	9
Deletion	Chr12	6903938	6903940	2
Deletion	Chr4	8075105	8075109	4
Deletion	Chr4	8193539	8193540	1
Deletion	Chr10	8759586	8759588	2
Deletion	Chr6	10271666	10271669	3
Deletion	Chr10	13265001	14036000	770999	73
Deletion	Chr3	15342486	15342492	6
Deletion	Chr9	16070001	16075000	4999
Deletion	Chr9	17647274	17647276	2
Deletion	Chr9	18507393	18507395	2
Deletion	Chr3	19295001	19340000	44999
Deletion	Chr3	20955010	20955012	2
Deletion	Chr1	32623813	32623822	9
Deletion	Chr3	34477597	34477598	1
Deletion	Chr1	40792008	40792009	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	16069567	16076925

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes