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| Mutant Information |
|---|
| Mutant Name | FN2626-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2626-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10491783 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 17992915 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 20417393 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 26232106 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34244423 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 39860773 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 3826449 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 7398811 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g098500 |
| SBS | Chr2 | 10413085 | G-T | Hetero | INTRON | |
| SBS | Chr2 | 15692692 | G-C | Hetero | INTRON | |
| SBS | Chr2 | 16972008 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 2129448 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 16385698 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9091796 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 8621386 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9051897 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 10321867 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 24692064 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g201500 |
| SBS | Chr6 | 10108312 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 10974867 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 5879390 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 24120146 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19954254 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1767147 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 21420209 | C-A | Hetero | INTRON | |
| SBS | Chr10 | 904859 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 2567150 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 19999108 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 29320943 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24379458 | A-C | Hetero | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 5122001 | 5166000 | 43999 | |
| Deletion | Chr1 | 14772120 | 14772199 | 79 | OsKitaake01g167100 |
| Deletion | Chr3 | 25125001 | 25306000 | 180999 | 13 |
| Deletion | Chr12 | 25899502 | 25899504 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 5735714 | 5735716 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 20676082 | 21513118 | OsKitaake08g154100 |
| Inversion | Chr8 | 20929085 | 21513111 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 8590652 | Chr1 | 17250321 | |
| Translocation | Chr8 | 15299866 | Chr1 | 1514338 |