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Mutant Information

Mutant Name	FN2627-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2627-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2909369 C-T Hetero INTERGENIC
SBS Chr1 10905886 T-C Hetero INTERGENIC
SBS Chr1 15260204 G-A Hetero INTERGENIC
SBS Chr1 24512859 A-G Hetero INTERGENIC
SBS Chr1 40350712 C-T Hetero INTERGENIC
SBS Chr1 42020086 T-C Hetero INTERGENIC
SBS Chr2 10369280 G-A Hetero INTERGENIC
SBS Chr3 20405557 G-A Hetero INTERGENIC
SBS Chr3 28005081 G-A Hetero INTERGENIC
SBS Chr3 29043345 G-A Hetero INTERGENIC
SBS Chr3 32471787 A-T Hetero INTERGENIC
SBS Chr3 37689337 G-A Hetero INTERGENIC
SBS Chr4 12860143 G-A Hetero INTRON
SBS Chr6 12339693 G-T Hetero INTRON
SBS Chr6 20931529 G-A Hetero INTERGENIC
SBS Chr6 27246168 G-A Hetero INTERGENIC
SBS Chr6 29294073 C-T Homo INTERGENIC
SBS Chr6 29497196 C-G Homo INTERGENIC
SBS Chr6 29560800 A-C Homo INTERGENIC
SBS Chr7 293269 C-T Hetero INTERGENIC
SBS Chr7 1635345 A-T Hetero INTERGENIC
SBS Chr7 11635194 T-G Hetero INTERGENIC
SBS Chr8 1617625 T-C Hetero INTERGENIC
SBS Chr8 6781020 G-A Hetero INTERGENIC
SBS Chr8 18254917 C-T Hetero INTERGENIC
SBS Chr10 20071377 C-T Homo INTERGENIC
SBS Chr11 5307190 C-T Hetero INTRON
SBS Chr11 17889391 A-G Hetero INTERGENIC
SBS Chr11 29702568 A-G Hetero INTERGENIC
SBS Chr12 23657130 C-T Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 55392 55393 1
Deletion Chr9 5120001 5161000 40999
Deletion Chr7 5890588 5890592 4
Deletion Chr6 20204336 20204384 48
Deletion Chr7 20593502 20593503 1
Deletion Chr6 26082526 26082530 4
Deletion Chr6 29675892 29675893 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 2791454 2791457 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2909369	C-T	Hetero	INTERGENIC
SBS	Chr1	10905886	T-C	Hetero	INTERGENIC
SBS	Chr1	15260204	G-A	Hetero	INTERGENIC
SBS	Chr1	24512859	A-G	Hetero	INTERGENIC
SBS	Chr1	40350712	C-T	Hetero	INTERGENIC
SBS	Chr1	42020086	T-C	Hetero	INTERGENIC
SBS	Chr2	10369280	G-A	Hetero	INTERGENIC
SBS	Chr3	20405557	G-A	Hetero	INTERGENIC
SBS	Chr3	28005081	G-A	Hetero	INTERGENIC
SBS	Chr3	29043345	G-A	Hetero	INTERGENIC
SBS	Chr3	32471787	A-T	Hetero	INTERGENIC
SBS	Chr3	37689337	G-A	Hetero	INTERGENIC
SBS	Chr4	12860143	G-A	Hetero	INTRON
SBS	Chr6	12339693	G-T	Hetero	INTRON
SBS	Chr6	20931529	G-A	Hetero	INTERGENIC
SBS	Chr6	27246168	G-A	Hetero	INTERGENIC
SBS	Chr6	29294073	C-T	Homo	INTERGENIC
SBS	Chr6	29497196	C-G	Homo	INTERGENIC
SBS	Chr6	29560800	A-C	Homo	INTERGENIC
SBS	Chr7	293269	C-T	Hetero	INTERGENIC
SBS	Chr7	1635345	A-T	Hetero	INTERGENIC
SBS	Chr7	11635194	T-G	Hetero	INTERGENIC
SBS	Chr8	1617625	T-C	Hetero	INTERGENIC
SBS	Chr8	6781020	G-A	Hetero	INTERGENIC
SBS	Chr8	18254917	C-T	Hetero	INTERGENIC
SBS	Chr10	20071377	C-T	Homo	INTERGENIC
SBS	Chr11	5307190	C-T	Hetero	INTRON
SBS	Chr11	17889391	A-G	Hetero	INTERGENIC
SBS	Chr11	29702568	A-G	Hetero	INTERGENIC
SBS	Chr12	23657130	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	55392	55393	1
Deletion	Chr9	5120001	5161000	40999
Deletion	Chr7	5890588	5890592	4
Deletion	Chr6	20204336	20204384	48
Deletion	Chr7	20593502	20593503	1
Deletion	Chr6	26082526	26082530	4
Deletion	Chr6	29675892	29675893	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes