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Mutant Information

Mutant Name	FN2629-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2629-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 89

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2294799 C-T Hetero INTERGENIC
SBS Chr1 3071742 C-G Hetero INTERGENIC
SBS Chr1 15498537 T-G Hetero INTERGENIC
SBS Chr1 15944381 G-T Hetero INTRON
SBS Chr1 17358408 T-C Hetero INTERGENIC
SBS Chr1 25804295 G-A Hetero INTERGENIC
SBS Chr1 32360807 C-G Hetero INTERGENIC
SBS Chr1 35700208 C-G Hetero INTERGENIC
SBS Chr1 37561467 G-A Hetero INTERGENIC
SBS Chr1 37701376 G-A Hetero INTERGENIC
SBS Chr1 41833763 C-A Hetero INTRON
SBS Chr1 42377005 G-T Hetero INTERGENIC
SBS Chr2 2513288 C-T Hetero INTERGENIC
SBS Chr2 11229117 C-T Hetero INTERGENIC
SBS Chr2 11726340 G-A Hetero INTERGENIC
SBS Chr2 13989179 G-T Hetero INTERGENIC
SBS Chr2 19200952 T-C Hetero INTERGENIC
SBS Chr2 22404536 T-A Hetero INTERGENIC
SBS Chr2 22404537 C-T Hetero INTERGENIC
SBS Chr2 32876992 C-T Hetero INTERGENIC
SBS Chr2 36297367 C-A Hetero INTERGENIC
SBS Chr3 6355364 C-A Hetero INTERGENIC
SBS Chr3 16683541 C-T Hetero INTERGENIC
SBS Chr3 26806433 C-T Homo INTERGENIC
SBS Chr3 37588777 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g422100
SBS Chr4 1680710 G-A Hetero INTERGENIC
SBS Chr4 4586171 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g021850
SBS Chr4 10822533 C-T Hetero INTERGENIC
SBS Chr4 12408390 A-T Hetero INTERGENIC
SBS Chr4 15991018 T-A Hetero INTERGENIC
SBS Chr4 18869719 C-T Homo INTERGENIC
SBS Chr4 20322025 G-T Hetero INTERGENIC
SBS Chr4 31959609 G-A Hetero INTERGENIC
SBS Chr5 1156684 T-G Homo INTERGENIC
SBS Chr5 10398255 C-A Hetero INTERGENIC
SBS Chr5 14592983 T-A Hetero INTERGENIC
SBS Chr5 16888889 G-A Hetero INTERGENIC
SBS Chr5 20029142 T-C Hetero UTR_5_PRIME
SBS Chr6 11254895 C-T Hetero INTRON
SBS Chr6 14575724 G-A Hetero INTRON
SBS Chr6 14983724 G-A Hetero INTERGENIC
SBS Chr6 15602751 C-T Hetero INTERGENIC
SBS Chr6 17677722 G-A Hetero INTRON
SBS Chr6 20070849 T-C Hetero INTERGENIC
SBS Chr7 6393674 G-T Hetero INTRON
SBS Chr7 6456933 C-T Hetero INTERGENIC
SBS Chr7 8337726 T-C Hetero INTERGENIC
SBS Chr7 8837349 G-A Hetero INTERGENIC
SBS Chr7 9632874 A-G Hetero INTERGENIC
SBS Chr7 13682291 A-G Hetero INTERGENIC
SBS Chr7 16256957 G-A Hetero INTRON
SBS Chr7 17237971 G-A Hetero INTERGENIC
SBS Chr7 18307536 A-G Hetero INTERGENIC
SBS Chr7 21847933 G-A Hetero INTERGENIC
SBS Chr7 22735788 A-G Hetero SYNONYMOUS_CODING
SBS Chr7 23715870 G-C Hetero INTERGENIC
SBS Chr7 25997523 C-T Hetero INTERGENIC
SBS Chr7 27335460 C-T Hetero INTERGENIC
SBS Chr7 28069276 G-T Hetero INTERGENIC
SBS Chr7 28753530 T-C Hetero INTRON
SBS Chr8 12314055 G-T Hetero INTERGENIC
SBS Chr8 14550252 C-T Hetero INTRON
SBS Chr8 20004615 G-A Hetero INTERGENIC
SBS Chr8 21070951 G-A Hetero INTERGENIC
SBS Chr8 25282506 G-A Hetero INTERGENIC
SBS Chr9 2638818 G-A Hetero INTERGENIC
SBS Chr9 7224336 G-A Hetero INTERGENIC
SBS Chr9 8182164 C-A Hetero INTERGENIC
SBS Chr9 13998060 G-A Hetero INTERGENIC
SBS Chr10 619863 A-G Hetero INTERGENIC
SBS Chr10 1059388 C-T Hetero INTRON
SBS Chr10 2723282 C-T Hetero INTERGENIC
SBS Chr10 6175577 C-T Hetero INTERGENIC
SBS Chr10 6764975 G-C Hetero INTERGENIC
SBS Chr10 7632006 G-T Hetero INTERGENIC
SBS Chr10 8352995 C-T Hetero INTERGENIC
SBS Chr10 10864987 G-A Hetero INTERGENIC
SBS Chr10 12717888 T-C Hetero INTRON
SBS Chr11 1099277 G-T Hetero INTERGENIC
SBS Chr11 2653187 C-A Hetero INTRON
SBS Chr11 11477318 C-T Hetero INTERGENIC
SBS Chr11 15410561 G-T Hetero INTERGENIC
SBS Chr11 15627621 A-G Hetero INTERGENIC
SBS Chr11 17756312 G-T Hetero INTERGENIC
SBS Chr11 17917615 C-T Hetero INTERGENIC
SBS Chr11 22066907 G-A Hetero INTERGENIC
SBS Chr12 6653235 C-T Hetero INTERGENIC
SBS Chr12 18357034 C-A Homo INTERGENIC
SBS Chr12 21426911 G-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 201379 201383 4
Deletion Chr5 946696 946703 7
Deletion Chr11 955001 991000 35999 6
Deletion Chr12 1015585 1015589 4
Deletion Chr5 1265017 1265029 12
Deletion Chr8 1345002 1345005 3
Deletion Chr11 1583067 1583069 2
Deletion Chr2 2998156 2998158 2
Deletion Chr12 8111874 8111884 10
Deletion Chr9 8179001 8203000 23999
Deletion Chr6 9801570 9801572 2
Deletion Chr9 10148001 10302000 153999 13
Deletion Chr9 10305001 10590000 284999 27
Deletion Chr5 13464339 13464361 22
Deletion Chr1 19484676 19484682 6
Deletion Chr1 20231462 20231464 2
Deletion Chr3 21355450 21355452 2
Deletion Chr10 21525000 21525014 14
Deletion Chr3 22474778 22474782 4
Deletion Chr12 24094466 24094480 14
Deletion Chr8 28322373 28322379 6
Deletion Chr2 37111423 37111424 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35473911 35473915 3
Insertion Chr3 5070714 5070717 2
Insertion Chr5 24533701 24533704 2
Insertion Chr6 23114871 23114874 2
Insertion Chr8 19471877 19471880 2
Insertion Chr8 21632521 21632524 2
Insertion Chr9 9208529 9208533 3

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 678124 Chr2 5749496

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2294799	C-T	Hetero	INTERGENIC
SBS	Chr1	3071742	C-G	Hetero	INTERGENIC
SBS	Chr1	15498537	T-G	Hetero	INTERGENIC
SBS	Chr1	15944381	G-T	Hetero	INTRON
SBS	Chr1	17358408	T-C	Hetero	INTERGENIC
SBS	Chr1	25804295	G-A	Hetero	INTERGENIC
SBS	Chr1	32360807	C-G	Hetero	INTERGENIC
SBS	Chr1	35700208	C-G	Hetero	INTERGENIC
SBS	Chr1	37561467	G-A	Hetero	INTERGENIC
SBS	Chr1	37701376	G-A	Hetero	INTERGENIC
SBS	Chr1	41833763	C-A	Hetero	INTRON
SBS	Chr1	42377005	G-T	Hetero	INTERGENIC
SBS	Chr2	2513288	C-T	Hetero	INTERGENIC
SBS	Chr2	11229117	C-T	Hetero	INTERGENIC
SBS	Chr2	11726340	G-A	Hetero	INTERGENIC
SBS	Chr2	13989179	G-T	Hetero	INTERGENIC
SBS	Chr2	19200952	T-C	Hetero	INTERGENIC
SBS	Chr2	22404536	T-A	Hetero	INTERGENIC
SBS	Chr2	22404537	C-T	Hetero	INTERGENIC
SBS	Chr2	32876992	C-T	Hetero	INTERGENIC
SBS	Chr2	36297367	C-A	Hetero	INTERGENIC
SBS	Chr3	6355364	C-A	Hetero	INTERGENIC
SBS	Chr3	16683541	C-T	Hetero	INTERGENIC
SBS	Chr3	26806433	C-T	Homo	INTERGENIC
SBS	Chr3	37588777	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g422100
SBS	Chr4	1680710	G-A	Hetero	INTERGENIC
SBS	Chr4	4586171	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g021850
SBS	Chr4	10822533	C-T	Hetero	INTERGENIC
SBS	Chr4	12408390	A-T	Hetero	INTERGENIC
SBS	Chr4	15991018	T-A	Hetero	INTERGENIC
SBS	Chr4	18869719	C-T	Homo	INTERGENIC
SBS	Chr4	20322025	G-T	Hetero	INTERGENIC
SBS	Chr4	31959609	G-A	Hetero	INTERGENIC
SBS	Chr5	1156684	T-G	Homo	INTERGENIC
SBS	Chr5	10398255	C-A	Hetero	INTERGENIC
SBS	Chr5	14592983	T-A	Hetero	INTERGENIC
SBS	Chr5	16888889	G-A	Hetero	INTERGENIC
SBS	Chr5	20029142	T-C	Hetero	UTR_5_PRIME
SBS	Chr6	11254895	C-T	Hetero	INTRON
SBS	Chr6	14575724	G-A	Hetero	INTRON
SBS	Chr6	14983724	G-A	Hetero	INTERGENIC
SBS	Chr6	15602751	C-T	Hetero	INTERGENIC
SBS	Chr6	17677722	G-A	Hetero	INTRON
SBS	Chr6	20070849	T-C	Hetero	INTERGENIC
SBS	Chr7	6393674	G-T	Hetero	INTRON
SBS	Chr7	6456933	C-T	Hetero	INTERGENIC
SBS	Chr7	8337726	T-C	Hetero	INTERGENIC
SBS	Chr7	8837349	G-A	Hetero	INTERGENIC
SBS	Chr7	9632874	A-G	Hetero	INTERGENIC
SBS	Chr7	13682291	A-G	Hetero	INTERGENIC
SBS	Chr7	16256957	G-A	Hetero	INTRON
SBS	Chr7	17237971	G-A	Hetero	INTERGENIC
SBS	Chr7	18307536	A-G	Hetero	INTERGENIC
SBS	Chr7	21847933	G-A	Hetero	INTERGENIC
SBS	Chr7	22735788	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr7	23715870	G-C	Hetero	INTERGENIC
SBS	Chr7	25997523	C-T	Hetero	INTERGENIC
SBS	Chr7	27335460	C-T	Hetero	INTERGENIC
SBS	Chr7	28069276	G-T	Hetero	INTERGENIC
SBS	Chr7	28753530	T-C	Hetero	INTRON
SBS	Chr8	12314055	G-T	Hetero	INTERGENIC
SBS	Chr8	14550252	C-T	Hetero	INTRON
SBS	Chr8	20004615	G-A	Hetero	INTERGENIC
SBS	Chr8	21070951	G-A	Hetero	INTERGENIC
SBS	Chr8	25282506	G-A	Hetero	INTERGENIC
SBS	Chr9	2638818	G-A	Hetero	INTERGENIC
SBS	Chr9	7224336	G-A	Hetero	INTERGENIC
SBS	Chr9	8182164	C-A	Hetero	INTERGENIC
SBS	Chr9	13998060	G-A	Hetero	INTERGENIC
SBS	Chr10	619863	A-G	Hetero	INTERGENIC
SBS	Chr10	1059388	C-T	Hetero	INTRON
SBS	Chr10	2723282	C-T	Hetero	INTERGENIC
SBS	Chr10	6175577	C-T	Hetero	INTERGENIC
SBS	Chr10	6764975	G-C	Hetero	INTERGENIC
SBS	Chr10	7632006	G-T	Hetero	INTERGENIC
SBS	Chr10	8352995	C-T	Hetero	INTERGENIC
SBS	Chr10	10864987	G-A	Hetero	INTERGENIC
SBS	Chr10	12717888	T-C	Hetero	INTRON
SBS	Chr11	1099277	G-T	Hetero	INTERGENIC
SBS	Chr11	2653187	C-A	Hetero	INTRON
SBS	Chr11	11477318	C-T	Hetero	INTERGENIC
SBS	Chr11	15410561	G-T	Hetero	INTERGENIC
SBS	Chr11	15627621	A-G	Hetero	INTERGENIC
SBS	Chr11	17756312	G-T	Hetero	INTERGENIC
SBS	Chr11	17917615	C-T	Hetero	INTERGENIC
SBS	Chr11	22066907	G-A	Hetero	INTERGENIC
SBS	Chr12	6653235	C-T	Hetero	INTERGENIC
SBS	Chr12	18357034	C-A	Homo	INTERGENIC
SBS	Chr12	21426911	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	201379	201383	4
Deletion	Chr5	946696	946703	7
Deletion	Chr11	955001	991000	35999	6
Deletion	Chr12	1015585	1015589	4
Deletion	Chr5	1265017	1265029	12
Deletion	Chr8	1345002	1345005	3
Deletion	Chr11	1583067	1583069	2
Deletion	Chr2	2998156	2998158	2
Deletion	Chr12	8111874	8111884	10
Deletion	Chr9	8179001	8203000	23999
Deletion	Chr6	9801570	9801572	2
Deletion	Chr9	10148001	10302000	153999	13
Deletion	Chr9	10305001	10590000	284999	27
Deletion	Chr5	13464339	13464361	22
Deletion	Chr1	19484676	19484682	6
Deletion	Chr1	20231462	20231464	2
Deletion	Chr3	21355450	21355452	2
Deletion	Chr10	21525000	21525014	14
Deletion	Chr3	22474778	22474782	4
Deletion	Chr12	24094466	24094480	14
Deletion	Chr8	28322373	28322379	6
Deletion	Chr2	37111423	37111424	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	678124	Chr2	5749496

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes