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Mutant Information

Mutant Name	FN2630-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2630-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 81

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 652033 C-T Hetero INTRON
SBS Chr1 676241 C-T Hetero INTERGENIC
SBS Chr1 4111550 A-G Hetero INTERGENIC
SBS Chr1 12697422 G-C Hetero INTRON
SBS Chr1 22646167 A-T Hetero INTERGENIC
SBS Chr1 26899884 C-A Hetero INTRON
SBS Chr1 30910429 A-G Hetero INTERGENIC
SBS Chr1 41261369 A-G Hetero INTERGENIC
SBS Chr2 631972 T-A Hetero INTERGENIC
SBS Chr2 3393862 A-G Hetero INTERGENIC
SBS Chr2 3605337 C-T Homo INTERGENIC
SBS Chr2 4629989 C-T Hetero INTERGENIC
SBS Chr2 4629990 T-C Hetero INTERGENIC
SBS Chr2 33578283 G-A Hetero INTERGENIC
SBS Chr3 3456759 C-T Hetero INTERGENIC
SBS Chr3 4156811 G-A Hetero INTERGENIC
SBS Chr3 4263049 T-C Hetero INTRON
SBS Chr3 21860979 C-T Hetero INTERGENIC
SBS Chr3 23725347 C-T Hetero INTRON
SBS Chr3 26247330 G-A Hetero INTERGENIC
SBS Chr3 35188185 C-T Hetero INTERGENIC
SBS Chr4 2378990 C-A Hetero INTERGENIC
SBS Chr4 4689030 C-G Hetero INTERGENIC
SBS Chr4 6503328 G-T Hetero INTERGENIC
SBS Chr4 16254484 G-A Hetero INTERGENIC
SBS Chr4 20644630 G-T Hetero INTERGENIC
SBS Chr4 25674751 C-T Hetero INTERGENIC
SBS Chr4 32974989 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 3016284 C-T Hetero INTERGENIC
SBS Chr5 6085074 G-A Hetero INTRON
SBS Chr5 6997285 T-C Homo INTERGENIC
SBS Chr5 14066970 T-A Homo INTERGENIC
SBS Chr5 15596695 T-C Homo INTERGENIC
SBS Chr5 16095765 G-A Homo INTERGENIC
SBS Chr5 23029067 G-C Hetero INTERGENIC
SBS Chr5 27174273 A-T Hetero INTERGENIC
SBS Chr6 11905675 G-A Hetero INTERGENIC
SBS Chr6 14314173 A-T Hetero INTERGENIC
SBS Chr6 16076830 C-A Hetero INTERGENIC
SBS Chr6 18899959 T-A Hetero INTERGENIC
SBS Chr6 19808402 T-C Hetero INTERGENIC
SBS Chr6 29286693 T-A Hetero INTERGENIC
SBS Chr6 29311133 G-A Hetero INTERGENIC
SBS Chr7 3060997 G-T Hetero INTERGENIC
SBS Chr7 9337902 G-A Hetero INTERGENIC
SBS Chr7 10585751 A-C Hetero INTERGENIC
SBS Chr7 18684652 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 25444165 A-T Hetero INTERGENIC
SBS Chr7 26864806 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g250200
SBS Chr8 2715227 C-T Hetero INTERGENIC
SBS Chr8 9689021 G-A Hetero INTERGENIC
SBS Chr8 19149330 A-T Hetero INTERGENIC
SBS Chr8 27992830 C-T Hetero INTERGENIC
SBS Chr9 9839261 A-G Hetero INTERGENIC
SBS Chr9 15022515 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g103800
SBS Chr9 16015451 G-A Hetero INTERGENIC
SBS Chr9 19928698 A-G Hetero INTRON
SBS Chr10 5152179 G-A Homo INTERGENIC
SBS Chr10 10347454 G-A Hetero INTERGENIC
SBS Chr10 10796061 T-C Homo INTERGENIC
SBS Chr10 12664631 A-G Hetero INTERGENIC
SBS Chr10 13128436 G-A Homo INTERGENIC
SBS Chr10 14953145 G-T Hetero INTERGENIC
SBS Chr11 3795386 A-G Hetero INTRON
SBS Chr11 10145605 C-T Homo INTERGENIC
SBS Chr11 11085130 C-T Homo INTERGENIC
SBS Chr11 17414663 G-T Hetero INTERGENIC
SBS Chr11 18869098 G-A Hetero INTERGENIC
SBS Chr11 26202201 C-A Hetero INTERGENIC
SBS Chr11 26534375 G-A Hetero INTERGENIC
SBS Chr12 4345156 G-T Hetero INTERGENIC
SBS Chr12 4980109 C-A Hetero INTERGENIC
SBS Chr12 6175099 G-T Hetero INTERGENIC
SBS Chr12 6505448 G-A Hetero INTRON
SBS Chr12 6789329 A-T Hetero INTERGENIC
SBS Chr12 6789330 A-T Hetero INTERGENIC
SBS Chr12 8757155 C-T Hetero INTERGENIC
SBS Chr12 13646937 G-A Hetero INTERGENIC
SBS Chr12 14186735 T-A Hetero INTERGENIC
SBS Chr12 18075692 C-T Hetero INTERGENIC
SBS Chr12 26306884 A-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 294746 294747 1
Deletion Chr12 4759279 4759285 6
Deletion Chr12 8382711 8382713 2
Deletion Chr1 11040840 11040845 5
Deletion Chr10 12448759 12448761 2
Deletion Chr7 13725001 13730000 4999
Deletion Chr11 16644766 16644774 8
Deletion Chr12 18860898 18860900 2
Deletion Chr8 19954741 19954743 2
Deletion Chr5 23908965 23908967 2 OsKitaake05g210500
Deletion Chr11 26691987 26691989 2
Deletion Chr1 35729917 35729919 2
Deletion Chr1 41475614 41475616 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 31178354 31178357 2
Insertion Chr6 22148881 22148889 7
Insertion Chr11 26239827 26239832 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 7128056 7236783 OsKitaake06g093300
Inversion Chr6 7128061 7236803 OsKitaake06g093300

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 7645656 Chr1 36300803 2
Translocation Chr11 18914633 Chr10 10796460
Translocation Chr11 18914850 Chr6 7645715 OsKitaake06g097900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	652033	C-T	Hetero	INTRON
SBS	Chr1	676241	C-T	Hetero	INTERGENIC
SBS	Chr1	4111550	A-G	Hetero	INTERGENIC
SBS	Chr1	12697422	G-C	Hetero	INTRON
SBS	Chr1	22646167	A-T	Hetero	INTERGENIC
SBS	Chr1	26899884	C-A	Hetero	INTRON
SBS	Chr1	30910429	A-G	Hetero	INTERGENIC
SBS	Chr1	41261369	A-G	Hetero	INTERGENIC
SBS	Chr2	631972	T-A	Hetero	INTERGENIC
SBS	Chr2	3393862	A-G	Hetero	INTERGENIC
SBS	Chr2	3605337	C-T	Homo	INTERGENIC
SBS	Chr2	4629989	C-T	Hetero	INTERGENIC
SBS	Chr2	4629990	T-C	Hetero	INTERGENIC
SBS	Chr2	33578283	G-A	Hetero	INTERGENIC
SBS	Chr3	3456759	C-T	Hetero	INTERGENIC
SBS	Chr3	4156811	G-A	Hetero	INTERGENIC
SBS	Chr3	4263049	T-C	Hetero	INTRON
SBS	Chr3	21860979	C-T	Hetero	INTERGENIC
SBS	Chr3	23725347	C-T	Hetero	INTRON
SBS	Chr3	26247330	G-A	Hetero	INTERGENIC
SBS	Chr3	35188185	C-T	Hetero	INTERGENIC
SBS	Chr4	2378990	C-A	Hetero	INTERGENIC
SBS	Chr4	4689030	C-G	Hetero	INTERGENIC
SBS	Chr4	6503328	G-T	Hetero	INTERGENIC
SBS	Chr4	16254484	G-A	Hetero	INTERGENIC
SBS	Chr4	20644630	G-T	Hetero	INTERGENIC
SBS	Chr4	25674751	C-T	Hetero	INTERGENIC
SBS	Chr4	32974989	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	3016284	C-T	Hetero	INTERGENIC
SBS	Chr5	6085074	G-A	Hetero	INTRON
SBS	Chr5	6997285	T-C	Homo	INTERGENIC
SBS	Chr5	14066970	T-A	Homo	INTERGENIC
SBS	Chr5	15596695	T-C	Homo	INTERGENIC
SBS	Chr5	16095765	G-A	Homo	INTERGENIC
SBS	Chr5	23029067	G-C	Hetero	INTERGENIC
SBS	Chr5	27174273	A-T	Hetero	INTERGENIC
SBS	Chr6	11905675	G-A	Hetero	INTERGENIC
SBS	Chr6	14314173	A-T	Hetero	INTERGENIC
SBS	Chr6	16076830	C-A	Hetero	INTERGENIC
SBS	Chr6	18899959	T-A	Hetero	INTERGENIC
SBS	Chr6	19808402	T-C	Hetero	INTERGENIC
SBS	Chr6	29286693	T-A	Hetero	INTERGENIC
SBS	Chr6	29311133	G-A	Hetero	INTERGENIC
SBS	Chr7	3060997	G-T	Hetero	INTERGENIC
SBS	Chr7	9337902	G-A	Hetero	INTERGENIC
SBS	Chr7	10585751	A-C	Hetero	INTERGENIC
SBS	Chr7	18684652	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	25444165	A-T	Hetero	INTERGENIC
SBS	Chr7	26864806	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g250200
SBS	Chr8	2715227	C-T	Hetero	INTERGENIC
SBS	Chr8	9689021	G-A	Hetero	INTERGENIC
SBS	Chr8	19149330	A-T	Hetero	INTERGENIC
SBS	Chr8	27992830	C-T	Hetero	INTERGENIC
SBS	Chr9	9839261	A-G	Hetero	INTERGENIC
SBS	Chr9	15022515	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g103800
SBS	Chr9	16015451	G-A	Hetero	INTERGENIC
SBS	Chr9	19928698	A-G	Hetero	INTRON
SBS	Chr10	5152179	G-A	Homo	INTERGENIC
SBS	Chr10	10347454	G-A	Hetero	INTERGENIC
SBS	Chr10	10796061	T-C	Homo	INTERGENIC
SBS	Chr10	12664631	A-G	Hetero	INTERGENIC
SBS	Chr10	13128436	G-A	Homo	INTERGENIC
SBS	Chr10	14953145	G-T	Hetero	INTERGENIC
SBS	Chr11	3795386	A-G	Hetero	INTRON
SBS	Chr11	10145605	C-T	Homo	INTERGENIC
SBS	Chr11	11085130	C-T	Homo	INTERGENIC
SBS	Chr11	17414663	G-T	Hetero	INTERGENIC
SBS	Chr11	18869098	G-A	Hetero	INTERGENIC
SBS	Chr11	26202201	C-A	Hetero	INTERGENIC
SBS	Chr11	26534375	G-A	Hetero	INTERGENIC
SBS	Chr12	4345156	G-T	Hetero	INTERGENIC
SBS	Chr12	4980109	C-A	Hetero	INTERGENIC
SBS	Chr12	6175099	G-T	Hetero	INTERGENIC
SBS	Chr12	6505448	G-A	Hetero	INTRON
SBS	Chr12	6789329	A-T	Hetero	INTERGENIC
SBS	Chr12	6789330	A-T	Hetero	INTERGENIC
SBS	Chr12	8757155	C-T	Hetero	INTERGENIC
SBS	Chr12	13646937	G-A	Hetero	INTERGENIC
SBS	Chr12	14186735	T-A	Hetero	INTERGENIC
SBS	Chr12	18075692	C-T	Hetero	INTERGENIC
SBS	Chr12	26306884	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	294746	294747	1
Deletion	Chr12	4759279	4759285	6
Deletion	Chr12	8382711	8382713	2
Deletion	Chr1	11040840	11040845	5
Deletion	Chr10	12448759	12448761	2
Deletion	Chr7	13725001	13730000	4999
Deletion	Chr11	16644766	16644774	8
Deletion	Chr12	18860898	18860900	2
Deletion	Chr8	19954741	19954743	2
Deletion	Chr5	23908965	23908967	2	OsKitaake05g210500
Deletion	Chr11	26691987	26691989	2
Deletion	Chr1	35729917	35729919	2
Deletion	Chr1	41475614	41475616	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	7128056	7236783	OsKitaake06g093300
Inversion	Chr6	7128061	7236803	OsKitaake06g093300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes