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Mutant Information

Mutant Name	FN2631-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2631-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 223587 A-T Homo SYNONYMOUS_CODING
SBS Chr1 9622656 G-T Homo INTRON
SBS Chr1 13880341 T-C Hetero INTERGENIC
SBS Chr1 29764731 G-A Hetero INTERGENIC
SBS Chr2 11201648 G-C Hetero INTERGENIC
SBS Chr3 1045520 C-T Hetero INTERGENIC
SBS Chr3 2414801 A-T Hetero INTERGENIC
SBS Chr3 25394606 C-A Homo SYNONYMOUS_CODING
SBS Chr4 8766340 A-G Hetero INTERGENIC
SBS Chr4 27106593 C-A Hetero INTERGENIC
SBS Chr4 27469345 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 30022599 C-G Hetero UTR_5_PRIME
SBS Chr4 35193519 G-A Hetero UTR_3_PRIME
SBS Chr4 35193520 C-T Hetero UTR_3_PRIME
SBS Chr5 16975913 C-T Hetero INTERGENIC
SBS Chr5 20893482 G-T Hetero INTERGENIC
SBS Chr5 20893484 G-C Hetero INTERGENIC
SBS Chr5 30182511 C-G Hetero INTERGENIC
SBS Chr6 1320230 A-T Homo INTERGENIC
SBS Chr6 15677349 G-A Hetero INTERGENIC
SBS Chr6 16553124 C-A Hetero INTERGENIC
SBS Chr6 29634653 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g275900
SBS Chr7 3319240 G-C Homo INTERGENIC
SBS Chr7 5867637 G-A Hetero INTERGENIC
SBS Chr8 13210566 T-A Hetero INTERGENIC
SBS Chr8 16226117 G-C Homo INTERGENIC
SBS Chr9 17326946 C-T Homo INTERGENIC
SBS Chr10 8288358 G-C Hetero INTERGENIC
SBS Chr10 16072635 G-A Hetero INTERGENIC
SBS Chr10 16072636 C-T Hetero INTERGENIC
SBS Chr10 17335281 A-G Hetero INTERGENIC
SBS Chr11 1531443 A-T Hetero INTRON
SBS Chr11 6272447 A-G Hetero INTERGENIC
SBS Chr11 9292678 C-T Hetero INTERGENIC
SBS Chr11 12979999 C-T Hetero INTERGENIC
SBS Chr11 18337623 G-A Hetero INTERGENIC
SBS Chr11 27027767 A-G Homo UTR_3_PRIME
SBS Chr11 27738811 C-G Hetero INTERGENIC
SBS Chr12 2192105 C-T Hetero INTERGENIC
SBS Chr12 11643672 T-C Hetero INTERGENIC
SBS Chr12 14009330 G-A Hetero INTERGENIC
SBS Chr12 23070916 G-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1334536 1334537 1
Deletion Chr12 1979990 1979997 7 OsKitaake12g030900
Deletion Chr5 1986500 1986510 10 OsKitaake05g022600
Deletion Chr10 2816486 2816493 7
Deletion Chr2 6852778 6852780 2
Deletion Chr6 11411639 11411655 16
Deletion Chr8 11525335 11525342 7
Deletion Chr4 12587028 12587036 8
Deletion Chr8 15510159 15510161 2
Deletion Chr2 15745085 15745087 2
Deletion Chr5 17651040 17651049 9
Deletion Chr10 18667883 18667885 2
Deletion Chr8 20252001 20271000 18999 3
Deletion Chr10 23535517 23535527 10
Deletion Chr11 23849604 23849606 2
Deletion Chr6 25004765 25004773 8
Deletion Chr2 36578084 36578086 2
Deletion Chr2 37162512 37162515 3
Deletion Chr1 39166001 39166004 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 20194117 20194123 5
Insertion Chr3 27807748 27807751 2
Insertion Chr5 6920717 6920727 9
Insertion Chr10 11583294 11583302 7

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 32013343 Chr1 29042429 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	223587	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	9622656	G-T	Homo	INTRON
SBS	Chr1	13880341	T-C	Hetero	INTERGENIC
SBS	Chr1	29764731	G-A	Hetero	INTERGENIC
SBS	Chr2	11201648	G-C	Hetero	INTERGENIC
SBS	Chr3	1045520	C-T	Hetero	INTERGENIC
SBS	Chr3	2414801	A-T	Hetero	INTERGENIC
SBS	Chr3	25394606	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr4	8766340	A-G	Hetero	INTERGENIC
SBS	Chr4	27106593	C-A	Hetero	INTERGENIC
SBS	Chr4	27469345	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	30022599	C-G	Hetero	UTR_5_PRIME
SBS	Chr4	35193519	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	35193520	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	16975913	C-T	Hetero	INTERGENIC
SBS	Chr5	20893482	G-T	Hetero	INTERGENIC
SBS	Chr5	20893484	G-C	Hetero	INTERGENIC
SBS	Chr5	30182511	C-G	Hetero	INTERGENIC
SBS	Chr6	1320230	A-T	Homo	INTERGENIC
SBS	Chr6	15677349	G-A	Hetero	INTERGENIC
SBS	Chr6	16553124	C-A	Hetero	INTERGENIC
SBS	Chr6	29634653	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g275900
SBS	Chr7	3319240	G-C	Homo	INTERGENIC
SBS	Chr7	5867637	G-A	Hetero	INTERGENIC
SBS	Chr8	13210566	T-A	Hetero	INTERGENIC
SBS	Chr8	16226117	G-C	Homo	INTERGENIC
SBS	Chr9	17326946	C-T	Homo	INTERGENIC
SBS	Chr10	8288358	G-C	Hetero	INTERGENIC
SBS	Chr10	16072635	G-A	Hetero	INTERGENIC
SBS	Chr10	16072636	C-T	Hetero	INTERGENIC
SBS	Chr10	17335281	A-G	Hetero	INTERGENIC
SBS	Chr11	1531443	A-T	Hetero	INTRON
SBS	Chr11	6272447	A-G	Hetero	INTERGENIC
SBS	Chr11	9292678	C-T	Hetero	INTERGENIC
SBS	Chr11	12979999	C-T	Hetero	INTERGENIC
SBS	Chr11	18337623	G-A	Hetero	INTERGENIC
SBS	Chr11	27027767	A-G	Homo	UTR_3_PRIME
SBS	Chr11	27738811	C-G	Hetero	INTERGENIC
SBS	Chr12	2192105	C-T	Hetero	INTERGENIC
SBS	Chr12	11643672	T-C	Hetero	INTERGENIC
SBS	Chr12	14009330	G-A	Hetero	INTERGENIC
SBS	Chr12	23070916	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1334536	1334537	1
Deletion	Chr12	1979990	1979997	7	OsKitaake12g030900
Deletion	Chr5	1986500	1986510	10	OsKitaake05g022600
Deletion	Chr10	2816486	2816493	7
Deletion	Chr2	6852778	6852780	2
Deletion	Chr6	11411639	11411655	16
Deletion	Chr8	11525335	11525342	7
Deletion	Chr4	12587028	12587036	8
Deletion	Chr8	15510159	15510161	2
Deletion	Chr2	15745085	15745087	2
Deletion	Chr5	17651040	17651049	9
Deletion	Chr10	18667883	18667885	2
Deletion	Chr8	20252001	20271000	18999	3
Deletion	Chr10	23535517	23535527	10
Deletion	Chr11	23849604	23849606	2
Deletion	Chr6	25004765	25004773	8
Deletion	Chr2	36578084	36578086	2
Deletion	Chr2	37162512	37162515	3
Deletion	Chr1	39166001	39166004	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	32013343	Chr1	29042429	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes