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Mutant Information

Mutant Name	FN2634-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2634-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6521472 G-A Homo INTRON
SBS Chr1 12892679 A-G Hetero INTERGENIC
SBS Chr1 19033043 C-T Hetero INTERGENIC
SBS Chr1 23588965 A-T Hetero INTERGENIC
SBS Chr2 12192939 G-A Homo INTERGENIC
SBS Chr2 15246822 G-A Homo INTERGENIC
SBS Chr2 18032837 G-A Hetero INTERGENIC
SBS Chr2 20638762 G-T Hetero INTERGENIC
SBS Chr2 23016394 T-C Hetero INTERGENIC
SBS Chr2 23279974 G-A Hetero INTERGENIC
SBS Chr2 30213600 C-T Hetero INTERGENIC
SBS Chr2 35629143 C-T Hetero INTERGENIC
SBS Chr3 543149 A-T Hetero INTERGENIC
SBS Chr3 9360123 G-A Homo INTERGENIC
SBS Chr3 15677558 C-A Hetero INTRON
SBS Chr3 19023840 T-C Hetero INTERGENIC
SBS Chr3 20862625 G-A Hetero INTERGENIC
SBS Chr3 32851650 A-C Homo INTERGENIC
SBS Chr4 18827174 G-A Hetero INTRON
SBS Chr4 23434058 A-T Homo INTERGENIC
SBS Chr4 24052191 A-T Homo INTRON
SBS Chr4 28309895 C-A Hetero INTERGENIC
SBS Chr4 28537545 A-T Homo INTERGENIC
SBS Chr5 13291553 T-A Hetero INTERGENIC
SBS Chr5 22809510 C-T Hetero INTERGENIC
SBS Chr5 28213243 C-T Homo INTRON
SBS Chr5 28248726 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g262200
SBS Chr6 11961941 A-T Hetero INTRON
SBS Chr7 26220139 G-A Homo INTRON
SBS Chr8 3224102 T-C Hetero INTRON
SBS Chr8 8429944 G-A Hetero INTERGENIC
SBS Chr9 711693 T-C Homo INTERGENIC
SBS Chr9 2014430 G-T Homo INTERGENIC
SBS Chr9 5309922 C-T Hetero INTERGENIC
SBS Chr9 15950057 G-T Hetero INTERGENIC
SBS Chr9 22651273 C-A Homo INTERGENIC
SBS Chr10 19244521 A-G Hetero INTERGENIC
SBS Chr10 20604415 G-A Hetero INTRON
SBS Chr10 20740233 T-C Hetero INTRON
SBS Chr11 25576913 C-A Hetero INTERGENIC
SBS Chr11 25577552 G-T Hetero INTERGENIC
SBS Chr11 28964456 T-A Hetero INTERGENIC
SBS Chr12 1300733 A-G Hetero INTERGENIC

Deletions: 32

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 3599870 3599872 2
Deletion Chr2 3886001 3921000 34999 5
Deletion Chr9 4138182 4138186 4
Deletion Chr10 4509900 4509910 10
Deletion Chr10 4968001 4996000 27999
Deletion Chr3 5551661 5551672 11 OsKitaake03g078900
Deletion Chr3 6196816 6196817 1
Deletion Chr4 6797950 6797952 2
Deletion Chr5 6977626 6977634 8 OsKitaake05g070000
Deletion Chr2 9765142 9765148 6
Deletion Chr4 10507868 10507870 2
Deletion Chr3 14154903 14154904 1
Deletion Chr1 14189327 14189332 5
Deletion Chr8 15045826 15045827 1
Deletion Chr6 16250063 16250066 3
Deletion Chr3 16435744 16435747 3
Deletion Chr7 17515201 17515206 5
Deletion Chr5 17828464 17828467 3
Deletion Chr1 18395445 18395446 1
Deletion Chr6 19259001 19342000 82999 2
Deletion Chr2 20535239 20535240 1
Deletion Chr1 21180326 21180336 10
Deletion Chr5 22745967 22745969 2
Deletion Chr4 25299799 25299800 1 OsKitaake04g171600
Deletion Chr6 26626539 26626540 1
Deletion Chr8 26657070 26657071 1
Deletion Chr4 27890216 27890222 6
Deletion Chr2 28060203 28060208 5
Deletion Chr1 28334274 28334276 2
Deletion Chr1 31978461 31978465 4
Deletion Chr1 32652138 32652140 2
Deletion Chr1 41100124 41100126 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 34092094 34092096 1
Insertion Chr7 20320795 20320798 2
Insertion Chr8 1542031 1542039 7
Insertion Chr10 8777808 8777811 2
Insertion Chr11 631816 631819 2
Insertion Chr11 8173834 8173836 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 34257743 34324455 OsKitaake01g353800
Inversion Chr1 34257748 34324456 OsKitaake01g353800

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4994481 Chr8 7534870
Translocation Chr10 4994572 Chr5 29301037
Translocation Chr10 4996114 Chr8 7534861

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6521472	G-A	Homo	INTRON
SBS	Chr1	12892679	A-G	Hetero	INTERGENIC
SBS	Chr1	19033043	C-T	Hetero	INTERGENIC
SBS	Chr1	23588965	A-T	Hetero	INTERGENIC
SBS	Chr2	12192939	G-A	Homo	INTERGENIC
SBS	Chr2	15246822	G-A	Homo	INTERGENIC
SBS	Chr2	18032837	G-A	Hetero	INTERGENIC
SBS	Chr2	20638762	G-T	Hetero	INTERGENIC
SBS	Chr2	23016394	T-C	Hetero	INTERGENIC
SBS	Chr2	23279974	G-A	Hetero	INTERGENIC
SBS	Chr2	30213600	C-T	Hetero	INTERGENIC
SBS	Chr2	35629143	C-T	Hetero	INTERGENIC
SBS	Chr3	543149	A-T	Hetero	INTERGENIC
SBS	Chr3	9360123	G-A	Homo	INTERGENIC
SBS	Chr3	15677558	C-A	Hetero	INTRON
SBS	Chr3	19023840	T-C	Hetero	INTERGENIC
SBS	Chr3	20862625	G-A	Hetero	INTERGENIC
SBS	Chr3	32851650	A-C	Homo	INTERGENIC
SBS	Chr4	18827174	G-A	Hetero	INTRON
SBS	Chr4	23434058	A-T	Homo	INTERGENIC
SBS	Chr4	24052191	A-T	Homo	INTRON
SBS	Chr4	28309895	C-A	Hetero	INTERGENIC
SBS	Chr4	28537545	A-T	Homo	INTERGENIC
SBS	Chr5	13291553	T-A	Hetero	INTERGENIC
SBS	Chr5	22809510	C-T	Hetero	INTERGENIC
SBS	Chr5	28213243	C-T	Homo	INTRON
SBS	Chr5	28248726	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g262200
SBS	Chr6	11961941	A-T	Hetero	INTRON
SBS	Chr7	26220139	G-A	Homo	INTRON
SBS	Chr8	3224102	T-C	Hetero	INTRON
SBS	Chr8	8429944	G-A	Hetero	INTERGENIC
SBS	Chr9	711693	T-C	Homo	INTERGENIC
SBS	Chr9	2014430	G-T	Homo	INTERGENIC
SBS	Chr9	5309922	C-T	Hetero	INTERGENIC
SBS	Chr9	15950057	G-T	Hetero	INTERGENIC
SBS	Chr9	22651273	C-A	Homo	INTERGENIC
SBS	Chr10	19244521	A-G	Hetero	INTERGENIC
SBS	Chr10	20604415	G-A	Hetero	INTRON
SBS	Chr10	20740233	T-C	Hetero	INTRON
SBS	Chr11	25576913	C-A	Hetero	INTERGENIC
SBS	Chr11	25577552	G-T	Hetero	INTERGENIC
SBS	Chr11	28964456	T-A	Hetero	INTERGENIC
SBS	Chr12	1300733	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	3599870	3599872	2
Deletion	Chr2	3886001	3921000	34999	5
Deletion	Chr9	4138182	4138186	4
Deletion	Chr10	4509900	4509910	10
Deletion	Chr10	4968001	4996000	27999
Deletion	Chr3	5551661	5551672	11	OsKitaake03g078900
Deletion	Chr3	6196816	6196817	1
Deletion	Chr4	6797950	6797952	2
Deletion	Chr5	6977626	6977634	8	OsKitaake05g070000
Deletion	Chr2	9765142	9765148	6
Deletion	Chr4	10507868	10507870	2
Deletion	Chr3	14154903	14154904	1
Deletion	Chr1	14189327	14189332	5
Deletion	Chr8	15045826	15045827	1
Deletion	Chr6	16250063	16250066	3
Deletion	Chr3	16435744	16435747	3
Deletion	Chr7	17515201	17515206	5
Deletion	Chr5	17828464	17828467	3
Deletion	Chr1	18395445	18395446	1
Deletion	Chr6	19259001	19342000	82999	2
Deletion	Chr2	20535239	20535240	1
Deletion	Chr1	21180326	21180336	10
Deletion	Chr5	22745967	22745969	2
Deletion	Chr4	25299799	25299800	1	OsKitaake04g171600
Deletion	Chr6	26626539	26626540	1
Deletion	Chr8	26657070	26657071	1
Deletion	Chr4	27890216	27890222	6
Deletion	Chr2	28060203	28060208	5
Deletion	Chr1	28334274	28334276	2
Deletion	Chr1	31978461	31978465	4
Deletion	Chr1	32652138	32652140	2
Deletion	Chr1	41100124	41100126	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	34257743	34324455	OsKitaake01g353800
Inversion	Chr1	34257748	34324456	OsKitaake01g353800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes