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Mutant Information

Mutant Name	FN2637-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2637-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 65

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3636708 A-G Hetero INTERGENIC
SBS Chr1 8325803 C-T Hetero INTERGENIC
SBS Chr1 9491737 G-A Hetero INTERGENIC
SBS Chr1 9654558 A-G Hetero INTERGENIC
SBS Chr1 16866505 T-G Homo INTERGENIC
SBS Chr1 18384284 G-A Hetero INTERGENIC
SBS Chr1 28459357 T-A Homo INTERGENIC
SBS Chr1 31648073 C-G Homo INTRON
SBS Chr1 38049847 G-A Hetero INTRON
SBS Chr1 44077366 A-T Hetero INTRON
SBS Chr2 2117837 G-A Hetero INTERGENIC
SBS Chr2 2159727 A-G Hetero INTERGENIC
SBS Chr2 8876694 T-C Homo INTERGENIC
SBS Chr2 10961544 G-T Homo INTERGENIC
SBS Chr2 11775361 A-G Hetero INTERGENIC
SBS Chr2 14523873 A-T Hetero INTERGENIC
SBS Chr2 14523896 A-G Hetero INTERGENIC
SBS Chr2 14531691 T-G Hetero INTERGENIC
SBS Chr2 14590239 T-A Hetero INTERGENIC
SBS Chr2 17420735 G-A Hetero UTR_3_PRIME
SBS Chr2 23274326 G-A Homo INTERGENIC
SBS Chr2 28663168 G-T Hetero INTERGENIC
SBS Chr2 36757152 G-T Hetero UTR_5_PRIME
SBS Chr3 11280080 C-A Hetero INTERGENIC
SBS Chr3 17581441 G-A Hetero INTERGENIC
SBS Chr3 19824679 G-A Hetero INTERGENIC
SBS Chr3 20366183 G-A Hetero INTERGENIC
SBS Chr3 24034057 C-T Homo INTRON
SBS Chr3 24441822 C-A Homo INTERGENIC
SBS Chr3 36885090 T-A Hetero INTRON
SBS Chr4 8995707 G-A Hetero INTERGENIC
SBS Chr4 16889570 A-G Hetero INTERGENIC
SBS Chr4 25009754 C-T Hetero INTERGENIC
SBS Chr5 8468237 C-A Hetero INTERGENIC
SBS Chr5 8883404 T-G Hetero INTERGENIC
SBS Chr5 17852799 G-T Hetero INTERGENIC
SBS Chr5 22742973 C-T Hetero INTERGENIC
SBS Chr6 22016948 G-A Hetero INTERGENIC
SBS Chr7 5261003 G-T Hetero INTERGENIC
SBS Chr7 12155431 G-A Homo INTERGENIC
SBS Chr7 25451198 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g230800
SBS Chr8 1791789 G-A Hetero INTERGENIC
SBS Chr8 8773822 G-A Hetero INTERGENIC
SBS Chr9 4589483 A-G Hetero INTERGENIC
SBS Chr9 7060273 T-C Hetero INTERGENIC
SBS Chr9 7060277 T-C Hetero INTERGENIC
SBS Chr9 18373399 C-T Hetero INTERGENIC
SBS Chr10 5468229 T-C Homo INTERGENIC
SBS Chr10 16948191 T-A Hetero INTERGENIC
SBS Chr10 22611673 C-T Hetero INTERGENIC
SBS Chr10 22874215 T-G Homo INTERGENIC
SBS Chr10 22877929 C-T Hetero INTERGENIC
SBS Chr11 3844101 T-C Hetero INTERGENIC
SBS Chr11 4289982 T-C Hetero INTERGENIC
SBS Chr11 7289121 C-T Hetero INTERGENIC
SBS Chr11 18114375 G-T Hetero INTERGENIC
SBS Chr12 4844278 C-T Hetero INTERGENIC
SBS Chr12 8667542 C-T Hetero INTERGENIC
SBS Chr12 9193268 C-G Homo INTERGENIC
SBS Chr12 14754107 G-A Hetero INTERGENIC
SBS Chr12 14754108 C-A Hetero INTERGENIC
SBS Chr12 15729494 G-A Homo INTERGENIC
SBS Chr12 18161697 G-T Hetero INTRON
SBS Chr12 23821899 C-T Hetero INTERGENIC
SBS Chr12 24141700 C-T Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2191001 2235000 43999 4
Deletion Chr4 4005217 4005229 12
Deletion Chr10 5670915 5670925 10
Deletion Chr12 6166507 6166514 7
Deletion Chr5 7312323 7312325 2
Deletion Chr11 8261696 8261698 2
Deletion Chr12 8541770 8541790 20
Deletion Chr6 8685466 8685467 1
Deletion Chr10 10096338 10096339 1
Deletion Chr1 11136747 11136749 2
Deletion Chr2 11182335 11182344 9
Deletion Chr6 12339413 12339414 1
Deletion Chr10 13293165 13293173 8
Deletion Chr9 13674457 13674464 7
Deletion Chr2 13847874 13847885 11
Deletion Chr1 15490512 15490515 3
Deletion Chr9 18560010 18560012 2
Deletion Chr3 18676394 18676396 2
Deletion Chr12 19197931 19197939 8
Deletion Chr1 19462166 19462167 1
Deletion Chr6 19719954 19719956 2
Deletion Chr7 20394532 20394534 2
Deletion Chr3 24235127 24235134 7
Deletion Chr11 27764724 27764727 3 OsKitaake11g226600
Deletion Chr8 28333253 28333266 13
Deletion Chr1 31648304 31648308 4
Deletion Chr4 36689046 36689051 5
Deletion Chr1 38705577 38705587 10

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 29410815 29410818 2
Insertion Chr2 34075287 34075290 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 4661803 4945289 OsKitaake01g065900
Inversion Chr1 4661828 4945325 OsKitaake01g065900
Inversion Chr9 7192733 7196693
Inversion Chr1 8333723 9107049
Inversion Chr6 11809592 12794027

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 930242 Chr4 21942583 2
Translocation Chr10 930243 Chr4 21943677 OsKitaake10g006600
Translocation Chr6 12794044 Chr1 8333755
Translocation Chr6 14557534 Chr2 17468025 2
Translocation Chr6 14557556 Chr2 17468313 2
Translocation Chr11 15571948 Chr9 7196688

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3636708	A-G	Hetero	INTERGENIC
SBS	Chr1	8325803	C-T	Hetero	INTERGENIC
SBS	Chr1	9491737	G-A	Hetero	INTERGENIC
SBS	Chr1	9654558	A-G	Hetero	INTERGENIC
SBS	Chr1	16866505	T-G	Homo	INTERGENIC
SBS	Chr1	18384284	G-A	Hetero	INTERGENIC
SBS	Chr1	28459357	T-A	Homo	INTERGENIC
SBS	Chr1	31648073	C-G	Homo	INTRON
SBS	Chr1	38049847	G-A	Hetero	INTRON
SBS	Chr1	44077366	A-T	Hetero	INTRON
SBS	Chr2	2117837	G-A	Hetero	INTERGENIC
SBS	Chr2	2159727	A-G	Hetero	INTERGENIC
SBS	Chr2	8876694	T-C	Homo	INTERGENIC
SBS	Chr2	10961544	G-T	Homo	INTERGENIC
SBS	Chr2	11775361	A-G	Hetero	INTERGENIC
SBS	Chr2	14523873	A-T	Hetero	INTERGENIC
SBS	Chr2	14523896	A-G	Hetero	INTERGENIC
SBS	Chr2	14531691	T-G	Hetero	INTERGENIC
SBS	Chr2	14590239	T-A	Hetero	INTERGENIC
SBS	Chr2	17420735	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	23274326	G-A	Homo	INTERGENIC
SBS	Chr2	28663168	G-T	Hetero	INTERGENIC
SBS	Chr2	36757152	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	11280080	C-A	Hetero	INTERGENIC
SBS	Chr3	17581441	G-A	Hetero	INTERGENIC
SBS	Chr3	19824679	G-A	Hetero	INTERGENIC
SBS	Chr3	20366183	G-A	Hetero	INTERGENIC
SBS	Chr3	24034057	C-T	Homo	INTRON
SBS	Chr3	24441822	C-A	Homo	INTERGENIC
SBS	Chr3	36885090	T-A	Hetero	INTRON
SBS	Chr4	8995707	G-A	Hetero	INTERGENIC
SBS	Chr4	16889570	A-G	Hetero	INTERGENIC
SBS	Chr4	25009754	C-T	Hetero	INTERGENIC
SBS	Chr5	8468237	C-A	Hetero	INTERGENIC
SBS	Chr5	8883404	T-G	Hetero	INTERGENIC
SBS	Chr5	17852799	G-T	Hetero	INTERGENIC
SBS	Chr5	22742973	C-T	Hetero	INTERGENIC
SBS	Chr6	22016948	G-A	Hetero	INTERGENIC
SBS	Chr7	5261003	G-T	Hetero	INTERGENIC
SBS	Chr7	12155431	G-A	Homo	INTERGENIC
SBS	Chr7	25451198	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g230800
SBS	Chr8	1791789	G-A	Hetero	INTERGENIC
SBS	Chr8	8773822	G-A	Hetero	INTERGENIC
SBS	Chr9	4589483	A-G	Hetero	INTERGENIC
SBS	Chr9	7060273	T-C	Hetero	INTERGENIC
SBS	Chr9	7060277	T-C	Hetero	INTERGENIC
SBS	Chr9	18373399	C-T	Hetero	INTERGENIC
SBS	Chr10	5468229	T-C	Homo	INTERGENIC
SBS	Chr10	16948191	T-A	Hetero	INTERGENIC
SBS	Chr10	22611673	C-T	Hetero	INTERGENIC
SBS	Chr10	22874215	T-G	Homo	INTERGENIC
SBS	Chr10	22877929	C-T	Hetero	INTERGENIC
SBS	Chr11	3844101	T-C	Hetero	INTERGENIC
SBS	Chr11	4289982	T-C	Hetero	INTERGENIC
SBS	Chr11	7289121	C-T	Hetero	INTERGENIC
SBS	Chr11	18114375	G-T	Hetero	INTERGENIC
SBS	Chr12	4844278	C-T	Hetero	INTERGENIC
SBS	Chr12	8667542	C-T	Hetero	INTERGENIC
SBS	Chr12	9193268	C-G	Homo	INTERGENIC
SBS	Chr12	14754107	G-A	Hetero	INTERGENIC
SBS	Chr12	14754108	C-A	Hetero	INTERGENIC
SBS	Chr12	15729494	G-A	Homo	INTERGENIC
SBS	Chr12	18161697	G-T	Hetero	INTRON
SBS	Chr12	23821899	C-T	Hetero	INTERGENIC
SBS	Chr12	24141700	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2191001	2235000	43999	4
Deletion	Chr4	4005217	4005229	12
Deletion	Chr10	5670915	5670925	10
Deletion	Chr12	6166507	6166514	7
Deletion	Chr5	7312323	7312325	2
Deletion	Chr11	8261696	8261698	2
Deletion	Chr12	8541770	8541790	20
Deletion	Chr6	8685466	8685467	1
Deletion	Chr10	10096338	10096339	1
Deletion	Chr1	11136747	11136749	2
Deletion	Chr2	11182335	11182344	9
Deletion	Chr6	12339413	12339414	1
Deletion	Chr10	13293165	13293173	8
Deletion	Chr9	13674457	13674464	7
Deletion	Chr2	13847874	13847885	11
Deletion	Chr1	15490512	15490515	3
Deletion	Chr9	18560010	18560012	2
Deletion	Chr3	18676394	18676396	2
Deletion	Chr12	19197931	19197939	8
Deletion	Chr1	19462166	19462167	1
Deletion	Chr6	19719954	19719956	2
Deletion	Chr7	20394532	20394534	2
Deletion	Chr3	24235127	24235134	7
Deletion	Chr11	27764724	27764727	3	OsKitaake11g226600
Deletion	Chr8	28333253	28333266	13
Deletion	Chr1	31648304	31648308	4
Deletion	Chr4	36689046	36689051	5
Deletion	Chr1	38705577	38705587	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4661803	4945289	OsKitaake01g065900
Inversion	Chr1	4661828	4945325	OsKitaake01g065900
Inversion	Chr9	7192733	7196693
Inversion	Chr1	8333723	9107049
Inversion	Chr6	11809592	12794027

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes