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Mutant Information

Mutant Name	FN2638-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2638-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 68

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1434964 C-A Homo INTERGENIC
SBS Chr1 4373776 C-T Hetero INTERGENIC
SBS Chr1 11521621 C-T Hetero INTRON
SBS Chr1 11521624 A-G Hetero INTRON
SBS Chr1 22591796 G-A Hetero INTERGENIC
SBS Chr2 2722872 G-A Hetero INTERGENIC
SBS Chr2 7369338 C-T Hetero INTRON
SBS Chr2 9642500 G-A Hetero INTERGENIC
SBS Chr2 14501442 T-C Hetero INTERGENIC
SBS Chr2 18870235 G-A Homo INTERGENIC
SBS Chr2 26424662 T-C Hetero INTERGENIC
SBS Chr2 32957945 G-A Homo INTRON
SBS Chr2 36451707 C-A Hetero UTR_3_PRIME
SBS Chr3 2969068 T-C Hetero INTRON
SBS Chr3 8709098 C-T Hetero INTRON
SBS Chr3 8709102 A-G Hetero INTRON
SBS Chr3 11926260 A-G Hetero INTERGENIC
SBS Chr3 13898960 A-G Hetero INTERGENIC
SBS Chr3 14779966 A-G Hetero INTRON
SBS Chr3 28999775 G-A Hetero INTERGENIC
SBS Chr3 32878690 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g349300
SBS Chr3 33401673 T-A Hetero INTERGENIC
SBS Chr4 16219537 A-G Hetero INTERGENIC
SBS Chr4 16676954 C-T Hetero INTERGENIC
SBS Chr4 33337814 T-C Hetero INTERGENIC
SBS Chr5 20028819 A-G Hetero INTERGENIC
SBS Chr5 28421514 G-A Homo INTERGENIC
SBS Chr6 1866217 T-C Hetero INTRON
SBS Chr6 2541368 C-T Hetero INTERGENIC
SBS Chr6 2663243 C-T Homo INTERGENIC
SBS Chr6 6769304 G-A Hetero INTERGENIC
SBS Chr6 10903877 A-G Homo INTRON
SBS Chr6 16610556 C-G Hetero INTERGENIC
SBS Chr6 26011568 C-G Hetero INTERGENIC
SBS Chr6 28669956 G-A Hetero INTERGENIC
SBS Chr7 1286913 T-C Hetero INTERGENIC
SBS Chr7 7233115 G-A Hetero INTERGENIC
SBS Chr7 8981495 T-C Hetero INTERGENIC
SBS Chr7 9070454 T-G Hetero INTERGENIC
SBS Chr7 9070455 G-C Hetero INTERGENIC
SBS Chr7 9070457 T-A Hetero INTERGENIC
SBS Chr7 9137984 A-T Homo INTRON
SBS Chr7 11657301 T-C Homo INTERGENIC
SBS Chr7 15303115 C-A Hetero INTERGENIC
SBS Chr7 28036094 C-T Hetero INTRON
SBS Chr8 2583813 C-G Hetero INTERGENIC
SBS Chr8 10082668 G-A Hetero INTERGENIC
SBS Chr8 21331301 G-A Homo INTRON
SBS Chr9 7341702 A-G Homo INTERGENIC
SBS Chr9 7456453 C-T Homo INTERGENIC
SBS Chr9 8310392 T-C Hetero INTERGENIC
SBS Chr10 11110769 T-A Hetero INTERGENIC
SBS Chr10 22066352 C-G Homo INTERGENIC
SBS Chr11 1013089 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g012600
SBS Chr11 9379266 C-T Hetero INTERGENIC
SBS Chr11 13790379 G-A Hetero INTERGENIC
SBS Chr11 17567081 C-T Hetero INTERGENIC
SBS Chr11 17567101 G-T Hetero INTERGENIC
SBS Chr11 17567102 C-T Hetero INTERGENIC
SBS Chr11 22689665 C-T Hetero INTERGENIC
SBS Chr11 24459760 G-A Homo INTERGENIC
SBS Chr11 26930120 C-T Hetero INTERGENIC
SBS Chr12 1610711 A-T Hetero INTERGENIC
SBS Chr12 1981510 C-T Homo INTERGENIC
SBS Chr12 6485437 T-C Hetero INTERGENIC
SBS Chr12 13512905 C-T Hetero INTERGENIC
SBS Chr12 19618954 C-T Hetero INTERGENIC
SBS Chr12 20140320 A-G Hetero UTR_5_PRIME

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1135383 1135413 30
Deletion Chr10 2166009 2166013 4 OsKitaake10g016900
Deletion Chr6 5475212 5475214 2
Deletion Chr11 7828448 7828450 2
Deletion Chr2 8030231 8030235 4
Deletion Chr8 9660372 9660389 17
Deletion Chr6 17793251 17793260 9 OsKitaake06g163800
Deletion Chr2 18516510 18516518 8
Deletion Chr5 19263498 19263500 2
Deletion Chr2 19588773 19588778 5 OsKitaake02g191600
Deletion Chr12 20987240 20987242 2
Deletion Chr2 25691971 25691972 1
Deletion Chr11 26570453 26570455 2
Deletion Chr7 29629213 29629214 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6957702 6957705 2
Insertion Chr2 2999700 2999703 2
Insertion Chr6 9662269 9662272 2
Insertion Chr6 20158269 20158273 3
Insertion Chr8 22301792 22301796 3
Insertion Chr10 16315795 16315798 2
Insertion Chr5 30230376 30230384 7

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 8773127 9382384
Inversion Chr3 8773133 8803969
Inversion Chr1 13128099 13553426 OsKitaake01g155500
Inversion Chr1 13128248 13553420 OsKitaake01g155500
Inversion Chr4 18276701 18278958 OsKitaake04g091900
Inversion Chr4 18276708 18278959 OsKitaake04g091900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 11735950 Chr2 31730292 OsKitaake02g323000
Translocation Chr3 11735956 Chr2 31730657 OsKitaake02g323000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1434964	C-A	Homo	INTERGENIC
SBS	Chr1	4373776	C-T	Hetero	INTERGENIC
SBS	Chr1	11521621	C-T	Hetero	INTRON
SBS	Chr1	11521624	A-G	Hetero	INTRON
SBS	Chr1	22591796	G-A	Hetero	INTERGENIC
SBS	Chr2	2722872	G-A	Hetero	INTERGENIC
SBS	Chr2	7369338	C-T	Hetero	INTRON
SBS	Chr2	9642500	G-A	Hetero	INTERGENIC
SBS	Chr2	14501442	T-C	Hetero	INTERGENIC
SBS	Chr2	18870235	G-A	Homo	INTERGENIC
SBS	Chr2	26424662	T-C	Hetero	INTERGENIC
SBS	Chr2	32957945	G-A	Homo	INTRON
SBS	Chr2	36451707	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	2969068	T-C	Hetero	INTRON
SBS	Chr3	8709098	C-T	Hetero	INTRON
SBS	Chr3	8709102	A-G	Hetero	INTRON
SBS	Chr3	11926260	A-G	Hetero	INTERGENIC
SBS	Chr3	13898960	A-G	Hetero	INTERGENIC
SBS	Chr3	14779966	A-G	Hetero	INTRON
SBS	Chr3	28999775	G-A	Hetero	INTERGENIC
SBS	Chr3	32878690	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g349300
SBS	Chr3	33401673	T-A	Hetero	INTERGENIC
SBS	Chr4	16219537	A-G	Hetero	INTERGENIC
SBS	Chr4	16676954	C-T	Hetero	INTERGENIC
SBS	Chr4	33337814	T-C	Hetero	INTERGENIC
SBS	Chr5	20028819	A-G	Hetero	INTERGENIC
SBS	Chr5	28421514	G-A	Homo	INTERGENIC
SBS	Chr6	1866217	T-C	Hetero	INTRON
SBS	Chr6	2541368	C-T	Hetero	INTERGENIC
SBS	Chr6	2663243	C-T	Homo	INTERGENIC
SBS	Chr6	6769304	G-A	Hetero	INTERGENIC
SBS	Chr6	10903877	A-G	Homo	INTRON
SBS	Chr6	16610556	C-G	Hetero	INTERGENIC
SBS	Chr6	26011568	C-G	Hetero	INTERGENIC
SBS	Chr6	28669956	G-A	Hetero	INTERGENIC
SBS	Chr7	1286913	T-C	Hetero	INTERGENIC
SBS	Chr7	7233115	G-A	Hetero	INTERGENIC
SBS	Chr7	8981495	T-C	Hetero	INTERGENIC
SBS	Chr7	9070454	T-G	Hetero	INTERGENIC
SBS	Chr7	9070455	G-C	Hetero	INTERGENIC
SBS	Chr7	9070457	T-A	Hetero	INTERGENIC
SBS	Chr7	9137984	A-T	Homo	INTRON
SBS	Chr7	11657301	T-C	Homo	INTERGENIC
SBS	Chr7	15303115	C-A	Hetero	INTERGENIC
SBS	Chr7	28036094	C-T	Hetero	INTRON
SBS	Chr8	2583813	C-G	Hetero	INTERGENIC
SBS	Chr8	10082668	G-A	Hetero	INTERGENIC
SBS	Chr8	21331301	G-A	Homo	INTRON
SBS	Chr9	7341702	A-G	Homo	INTERGENIC
SBS	Chr9	7456453	C-T	Homo	INTERGENIC
SBS	Chr9	8310392	T-C	Hetero	INTERGENIC
SBS	Chr10	11110769	T-A	Hetero	INTERGENIC
SBS	Chr10	22066352	C-G	Homo	INTERGENIC
SBS	Chr11	1013089	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g012600
SBS	Chr11	9379266	C-T	Hetero	INTERGENIC
SBS	Chr11	13790379	G-A	Hetero	INTERGENIC
SBS	Chr11	17567081	C-T	Hetero	INTERGENIC
SBS	Chr11	17567101	G-T	Hetero	INTERGENIC
SBS	Chr11	17567102	C-T	Hetero	INTERGENIC
SBS	Chr11	22689665	C-T	Hetero	INTERGENIC
SBS	Chr11	24459760	G-A	Homo	INTERGENIC
SBS	Chr11	26930120	C-T	Hetero	INTERGENIC
SBS	Chr12	1610711	A-T	Hetero	INTERGENIC
SBS	Chr12	1981510	C-T	Homo	INTERGENIC
SBS	Chr12	6485437	T-C	Hetero	INTERGENIC
SBS	Chr12	13512905	C-T	Hetero	INTERGENIC
SBS	Chr12	19618954	C-T	Hetero	INTERGENIC
SBS	Chr12	20140320	A-G	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1135383	1135413	30
Deletion	Chr10	2166009	2166013	4	OsKitaake10g016900
Deletion	Chr6	5475212	5475214	2
Deletion	Chr11	7828448	7828450	2
Deletion	Chr2	8030231	8030235	4
Deletion	Chr8	9660372	9660389	17
Deletion	Chr6	17793251	17793260	9	OsKitaake06g163800
Deletion	Chr2	18516510	18516518	8
Deletion	Chr5	19263498	19263500	2
Deletion	Chr2	19588773	19588778	5	OsKitaake02g191600
Deletion	Chr12	20987240	20987242	2
Deletion	Chr2	25691971	25691972	1
Deletion	Chr11	26570453	26570455	2
Deletion	Chr7	29629213	29629214	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8773127	9382384
Inversion	Chr3	8773133	8803969
Inversion	Chr1	13128099	13553426	OsKitaake01g155500
Inversion	Chr1	13128248	13553420	OsKitaake01g155500
Inversion	Chr4	18276701	18278958	OsKitaake04g091900
Inversion	Chr4	18276708	18278959	OsKitaake04g091900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes