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Mutant Information

Mutant Name	FN2639-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2639-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 73

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2844692 A-G Homo INTERGENIC
SBS Chr1 6625261 G-A Hetero INTERGENIC
SBS Chr1 8321052 C-T Hetero INTERGENIC
SBS Chr1 8855733 A-T Hetero INTERGENIC
SBS Chr1 11003496 C-T Hetero INTERGENIC
SBS Chr1 13143902 C-T Hetero INTERGENIC
SBS Chr1 14026737 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g161500
SBS Chr1 24687565 C-T Hetero INTERGENIC
SBS Chr1 29209834 T-C Hetero INTERGENIC
SBS Chr1 29720683 G-T Hetero INTERGENIC
SBS Chr1 32063653 G-T Hetero INTERGENIC
SBS Chr1 39315677 C-T Homo INTRON
SBS Chr2 4077572 A-T Hetero INTERGENIC
SBS Chr2 11930806 C-T Hetero INTERGENIC
SBS Chr2 11930807 A-T Hetero INTERGENIC
SBS Chr2 12305981 G-A Hetero INTERGENIC
SBS Chr2 20132275 G-A Hetero INTERGENIC
SBS Chr2 34955524 C-T Hetero INTERGENIC
SBS Chr3 10475466 T-G Hetero INTRON
SBS Chr4 6888332 A-G Hetero INTERGENIC
SBS Chr4 16159677 A-G Hetero INTERGENIC
SBS Chr4 18640475 A-T Hetero INTERGENIC
SBS Chr4 18640476 A-T Hetero INTERGENIC
SBS Chr4 21147346 A-G Hetero INTERGENIC
SBS Chr4 25832741 C-T Hetero INTRON
SBS Chr4 28460815 C-A Hetero INTRON
SBS Chr4 35297675 C-T Hetero INTERGENIC
SBS Chr5 1945192 A-T Hetero INTERGENIC
SBS Chr5 2934759 A-T Hetero INTERGENIC
SBS Chr5 10412960 G-C Hetero INTERGENIC
SBS Chr5 14679155 T-A Hetero INTERGENIC
SBS Chr5 15203282 C-T Hetero INTERGENIC
SBS Chr5 16376296 T-A Hetero INTERGENIC
SBS Chr5 16376297 T-A Hetero INTERGENIC
SBS Chr5 16580190 C-T Hetero INTERGENIC
SBS Chr5 19629770 G-A Hetero INTERGENIC
SBS Chr5 25223371 C-T Hetero INTERGENIC
SBS Chr5 28453234 G-T Hetero INTERGENIC
SBS Chr6 7723998 C-T Hetero INTERGENIC
SBS Chr6 15645631 C-A Hetero INTERGENIC
SBS Chr6 18064020 T-C Hetero INTERGENIC
SBS Chr6 20400895 G-A Hetero INTERGENIC
SBS Chr7 1669674 A-T Homo NON_SYNONYMOUS_CODING OsKitaake07g023400
SBS Chr7 3551193 G-T Homo INTERGENIC
SBS Chr7 4832501 T-A Hetero INTERGENIC
SBS Chr7 7594445 G-T Hetero INTERGENIC
SBS Chr7 14566316 C-G Hetero INTERGENIC
SBS Chr7 21181412 T-C Hetero INTERGENIC
SBS Chr7 27177205 A-G Homo INTERGENIC
SBS Chr7 27177213 C-T Homo INTERGENIC
SBS Chr8 1786547 G-A Homo UTR_5_PRIME
SBS Chr8 1786548 T-A Homo UTR_5_PRIME
SBS Chr8 6054285 C-A Hetero INTERGENIC
SBS Chr9 1576762 C-A Hetero INTRON
SBS Chr9 7484331 T-C Homo INTERGENIC
SBS Chr9 13353267 C-T Homo INTERGENIC
SBS Chr9 15866258 C-T Hetero INTERGENIC
SBS Chr10 2122387 C-A Hetero UTR_5_PRIME
SBS Chr10 15734694 G-A Homo INTERGENIC
SBS Chr11 1742263 G-A Hetero INTERGENIC
SBS Chr11 5334668 C-T Hetero INTERGENIC
SBS Chr11 7238060 C-A Hetero INTERGENIC
SBS Chr11 7671237 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 14860575 C-T Hetero INTERGENIC
SBS Chr11 16160412 C-T Hetero INTERGENIC
SBS Chr11 17236553 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g134400
SBS Chr11 20125018 G-T Hetero INTERGENIC
SBS Chr11 21650238 G-A Homo INTERGENIC
SBS Chr11 21650241 A-G Homo INTERGENIC
SBS Chr11 28502140 C-T Hetero INTERGENIC
SBS Chr11 28540673 G-T Hetero INTERGENIC
SBS Chr12 1065335 T-A Hetero INTERGENIC
SBS Chr12 25903688 C-T Hetero SYNONYMOUS_CODING

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1388001 1425000 36999 8
Deletion Chr6 2023036 2023049 13
Deletion Chr3 4175989 4175997 8
Deletion Chr4 5149319 5149321 2
Deletion Chr9 6126739 6126740 1
Deletion Chr2 7153739 7153740 1
Deletion Chr1 7862043 7862045 2
Deletion Chr1 8806829 8806834 5
Deletion Chr1 8867613 8867631 18
Deletion Chr12 11060270 11060275 5
Deletion Chr1 11482001 11572000 89999 5
Deletion Chr10 16176442 16176445 3
Deletion Chr1 16417919 16417920 1
Deletion Chr4 17766508 17766512 4
Deletion Chr7 17992129 17992130 1
Deletion Chr1 24603777 24603778 1 OsKitaake01g237700
Deletion Chr7 24674622 24674624 2
Deletion Chr2 27950122 27950126 4
Deletion Chr4 28488487 28488490 3
Deletion Chr4 29905597 29905602 5
Deletion Chr4 30760945 30760952 7

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16901967 16901969 1
Insertion Chr5 29219645 29219648 2
Insertion Chr6 18260956 18260959 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 11451689 11484549 OsKitaake01g139900
Inversion Chr1 11451702 11571976

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2844692	A-G	Homo	INTERGENIC
SBS	Chr1	6625261	G-A	Hetero	INTERGENIC
SBS	Chr1	8321052	C-T	Hetero	INTERGENIC
SBS	Chr1	8855733	A-T	Hetero	INTERGENIC
SBS	Chr1	11003496	C-T	Hetero	INTERGENIC
SBS	Chr1	13143902	C-T	Hetero	INTERGENIC
SBS	Chr1	14026737	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g161500
SBS	Chr1	24687565	C-T	Hetero	INTERGENIC
SBS	Chr1	29209834	T-C	Hetero	INTERGENIC
SBS	Chr1	29720683	G-T	Hetero	INTERGENIC
SBS	Chr1	32063653	G-T	Hetero	INTERGENIC
SBS	Chr1	39315677	C-T	Homo	INTRON
SBS	Chr2	4077572	A-T	Hetero	INTERGENIC
SBS	Chr2	11930806	C-T	Hetero	INTERGENIC
SBS	Chr2	11930807	A-T	Hetero	INTERGENIC
SBS	Chr2	12305981	G-A	Hetero	INTERGENIC
SBS	Chr2	20132275	G-A	Hetero	INTERGENIC
SBS	Chr2	34955524	C-T	Hetero	INTERGENIC
SBS	Chr3	10475466	T-G	Hetero	INTRON
SBS	Chr4	6888332	A-G	Hetero	INTERGENIC
SBS	Chr4	16159677	A-G	Hetero	INTERGENIC
SBS	Chr4	18640475	A-T	Hetero	INTERGENIC
SBS	Chr4	18640476	A-T	Hetero	INTERGENIC
SBS	Chr4	21147346	A-G	Hetero	INTERGENIC
SBS	Chr4	25832741	C-T	Hetero	INTRON
SBS	Chr4	28460815	C-A	Hetero	INTRON
SBS	Chr4	35297675	C-T	Hetero	INTERGENIC
SBS	Chr5	1945192	A-T	Hetero	INTERGENIC
SBS	Chr5	2934759	A-T	Hetero	INTERGENIC
SBS	Chr5	10412960	G-C	Hetero	INTERGENIC
SBS	Chr5	14679155	T-A	Hetero	INTERGENIC
SBS	Chr5	15203282	C-T	Hetero	INTERGENIC
SBS	Chr5	16376296	T-A	Hetero	INTERGENIC
SBS	Chr5	16376297	T-A	Hetero	INTERGENIC
SBS	Chr5	16580190	C-T	Hetero	INTERGENIC
SBS	Chr5	19629770	G-A	Hetero	INTERGENIC
SBS	Chr5	25223371	C-T	Hetero	INTERGENIC
SBS	Chr5	28453234	G-T	Hetero	INTERGENIC
SBS	Chr6	7723998	C-T	Hetero	INTERGENIC
SBS	Chr6	15645631	C-A	Hetero	INTERGENIC
SBS	Chr6	18064020	T-C	Hetero	INTERGENIC
SBS	Chr6	20400895	G-A	Hetero	INTERGENIC
SBS	Chr7	1669674	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g023400
SBS	Chr7	3551193	G-T	Homo	INTERGENIC
SBS	Chr7	4832501	T-A	Hetero	INTERGENIC
SBS	Chr7	7594445	G-T	Hetero	INTERGENIC
SBS	Chr7	14566316	C-G	Hetero	INTERGENIC
SBS	Chr7	21181412	T-C	Hetero	INTERGENIC
SBS	Chr7	27177205	A-G	Homo	INTERGENIC
SBS	Chr7	27177213	C-T	Homo	INTERGENIC
SBS	Chr8	1786547	G-A	Homo	UTR_5_PRIME
SBS	Chr8	1786548	T-A	Homo	UTR_5_PRIME
SBS	Chr8	6054285	C-A	Hetero	INTERGENIC
SBS	Chr9	1576762	C-A	Hetero	INTRON
SBS	Chr9	7484331	T-C	Homo	INTERGENIC
SBS	Chr9	13353267	C-T	Homo	INTERGENIC
SBS	Chr9	15866258	C-T	Hetero	INTERGENIC
SBS	Chr10	2122387	C-A	Hetero	UTR_5_PRIME
SBS	Chr10	15734694	G-A	Homo	INTERGENIC
SBS	Chr11	1742263	G-A	Hetero	INTERGENIC
SBS	Chr11	5334668	C-T	Hetero	INTERGENIC
SBS	Chr11	7238060	C-A	Hetero	INTERGENIC
SBS	Chr11	7671237	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	14860575	C-T	Hetero	INTERGENIC
SBS	Chr11	16160412	C-T	Hetero	INTERGENIC
SBS	Chr11	17236553	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g134400
SBS	Chr11	20125018	G-T	Hetero	INTERGENIC
SBS	Chr11	21650238	G-A	Homo	INTERGENIC
SBS	Chr11	21650241	A-G	Homo	INTERGENIC
SBS	Chr11	28502140	C-T	Hetero	INTERGENIC
SBS	Chr11	28540673	G-T	Hetero	INTERGENIC
SBS	Chr12	1065335	T-A	Hetero	INTERGENIC
SBS	Chr12	25903688	C-T	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1388001	1425000	36999	8
Deletion	Chr6	2023036	2023049	13
Deletion	Chr3	4175989	4175997	8
Deletion	Chr4	5149319	5149321	2
Deletion	Chr9	6126739	6126740	1
Deletion	Chr2	7153739	7153740	1
Deletion	Chr1	7862043	7862045	2
Deletion	Chr1	8806829	8806834	5
Deletion	Chr1	8867613	8867631	18
Deletion	Chr12	11060270	11060275	5
Deletion	Chr1	11482001	11572000	89999	5
Deletion	Chr10	16176442	16176445	3
Deletion	Chr1	16417919	16417920	1
Deletion	Chr4	17766508	17766512	4
Deletion	Chr7	17992129	17992130	1
Deletion	Chr1	24603777	24603778	1	OsKitaake01g237700
Deletion	Chr7	24674622	24674624	2
Deletion	Chr2	27950122	27950126	4
Deletion	Chr4	28488487	28488490	3
Deletion	Chr4	29905597	29905602	5
Deletion	Chr4	30760945	30760952	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11451689	11484549	OsKitaake01g139900
Inversion	Chr1	11451702	11571976

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes