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Mutant Information

Mutant Name	FN2640-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2640-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3045720 A-C Hetero INTERGENIC
SBS Chr1 6611594 T-A Homo INTRON
SBS Chr1 8987819 C-G Homo INTERGENIC
SBS Chr1 9407463 C-G Hetero INTRON
SBS Chr1 13072913 T-A Hetero INTERGENIC
SBS Chr1 22044287 G-A Hetero INTERGENIC
SBS Chr1 29686058 G-T Hetero INTERGENIC
SBS Chr1 34024137 T-C Homo INTRON
SBS Chr1 41808503 C-T Homo INTERGENIC
SBS Chr2 5607969 G-T Hetero SYNONYMOUS_CODING
SBS Chr2 10824937 T-C Hetero INTRON
SBS Chr2 28346381 T-A Homo INTERGENIC
SBS Chr3 8733959 T-C Hetero INTERGENIC
SBS Chr3 13266222 G-A Hetero INTERGENIC
SBS Chr3 13844186 C-T Hetero INTRON
SBS Chr3 14548605 A-G Homo INTRON
SBS Chr3 14713787 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g191200
SBS Chr3 17069962 A-G Hetero INTERGENIC
SBS Chr3 20355864 G-T Hetero INTERGENIC
SBS Chr3 20355865 G-T Hetero INTERGENIC
SBS Chr3 36420617 A-G Hetero INTERGENIC
SBS Chr4 1455312 C-G Hetero INTERGENIC
SBS Chr4 2568718 C-G Hetero INTERGENIC
SBS Chr4 13700433 G-C Homo INTERGENIC
SBS Chr4 17782036 G-T Hetero INTERGENIC
SBS Chr4 20361689 T-C Hetero INTERGENIC
SBS Chr4 35417192 G-T Hetero INTERGENIC
SBS Chr5 8177100 G-A Hetero INTERGENIC
SBS Chr5 10289650 C-T Hetero INTERGENIC
SBS Chr5 10904562 T-C Homo INTERGENIC
SBS Chr5 28143597 G-T Hetero INTERGENIC
SBS Chr5 29111391 A-T Hetero INTERGENIC
SBS Chr6 12482003 C-T Hetero INTERGENIC
SBS Chr6 14141318 C-A Hetero SYNONYMOUS_CODING
SBS Chr6 15525579 T-A Hetero INTERGENIC
SBS Chr6 18846108 C-T Hetero INTERGENIC
SBS Chr6 23417583 C-G Homo INTRON
SBS Chr7 6895066 A-T Hetero INTERGENIC
SBS Chr7 21850422 C-A Homo INTERGENIC
SBS Chr8 4933060 C-G Homo INTERGENIC
SBS Chr8 24316434 T-C Hetero INTERGENIC
SBS Chr9 909980 C-T Hetero INTERGENIC
SBS Chr9 22505252 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 5300893 C-T Homo INTERGENIC
SBS Chr11 13395659 C-A Hetero INTERGENIC
SBS Chr11 29343778 G-A Hetero INTERGENIC
SBS Chr12 3313443 A-C Homo INTRON
SBS Chr12 4243822 C-T Homo INTERGENIC
SBS Chr12 8523631 T-C Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 8321029 8321038 9
Deletion Chr2 9449001 9585000 135999 6
Deletion Chr5 11357316 11357319 3
Deletion Chr11 18059981 18059986 5
Deletion Chr4 18881067 18881077 10
Deletion Chr5 19528009 19528011 2
Deletion Chr3 20012687 20012690 3
Deletion Chr4 20670623 20670624 1 OsKitaake04g111800
Deletion Chr5 21592904 21592927 23
Deletion Chr5 21888885 21888887 2
Deletion Chr11 26234614 26234616 2
Deletion Chr7 29451001 29500000 48999 10
Deletion Chr6 30051119 30051128 9
Deletion Chr3 33914134 33914135 1
Deletion Chr1 34483793 34483809 16
Deletion Chr1 39502994 39502998 4

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 2601178 2601180 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 4487690 5185907 OsKitaake10g033300
Inversion Chr10 4487697 5185908 OsKitaake10g033300
Inversion Chr2 21880250 21955086 OsKitaake02g212900
Inversion Chr2 21880288 21955094 OsKitaake02g212900
Inversion Chr9 22501878 22637188 OsKitaake09g204900

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 11885321 Chr7 29453871 2
Translocation Chr10 11885325 Chr7 29453283 2
Translocation Chr9 22494895 Chr1 2927072 OsKitaake09g204800
Translocation Chr9 22495058 Chr1 44273257 2
Translocation Chr9 22501866 Chr7 29453282 2
Translocation Chr9 22637188 Chr1 44273204 OsKitaake01g494801

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3045720	A-C	Hetero	INTERGENIC
SBS	Chr1	6611594	T-A	Homo	INTRON
SBS	Chr1	8987819	C-G	Homo	INTERGENIC
SBS	Chr1	9407463	C-G	Hetero	INTRON
SBS	Chr1	13072913	T-A	Hetero	INTERGENIC
SBS	Chr1	22044287	G-A	Hetero	INTERGENIC
SBS	Chr1	29686058	G-T	Hetero	INTERGENIC
SBS	Chr1	34024137	T-C	Homo	INTRON
SBS	Chr1	41808503	C-T	Homo	INTERGENIC
SBS	Chr2	5607969	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	10824937	T-C	Hetero	INTRON
SBS	Chr2	28346381	T-A	Homo	INTERGENIC
SBS	Chr3	8733959	T-C	Hetero	INTERGENIC
SBS	Chr3	13266222	G-A	Hetero	INTERGENIC
SBS	Chr3	13844186	C-T	Hetero	INTRON
SBS	Chr3	14548605	A-G	Homo	INTRON
SBS	Chr3	14713787	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g191200
SBS	Chr3	17069962	A-G	Hetero	INTERGENIC
SBS	Chr3	20355864	G-T	Hetero	INTERGENIC
SBS	Chr3	20355865	G-T	Hetero	INTERGENIC
SBS	Chr3	36420617	A-G	Hetero	INTERGENIC
SBS	Chr4	1455312	C-G	Hetero	INTERGENIC
SBS	Chr4	2568718	C-G	Hetero	INTERGENIC
SBS	Chr4	13700433	G-C	Homo	INTERGENIC
SBS	Chr4	17782036	G-T	Hetero	INTERGENIC
SBS	Chr4	20361689	T-C	Hetero	INTERGENIC
SBS	Chr4	35417192	G-T	Hetero	INTERGENIC
SBS	Chr5	8177100	G-A	Hetero	INTERGENIC
SBS	Chr5	10289650	C-T	Hetero	INTERGENIC
SBS	Chr5	10904562	T-C	Homo	INTERGENIC
SBS	Chr5	28143597	G-T	Hetero	INTERGENIC
SBS	Chr5	29111391	A-T	Hetero	INTERGENIC
SBS	Chr6	12482003	C-T	Hetero	INTERGENIC
SBS	Chr6	14141318	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	15525579	T-A	Hetero	INTERGENIC
SBS	Chr6	18846108	C-T	Hetero	INTERGENIC
SBS	Chr6	23417583	C-G	Homo	INTRON
SBS	Chr7	6895066	A-T	Hetero	INTERGENIC
SBS	Chr7	21850422	C-A	Homo	INTERGENIC
SBS	Chr8	4933060	C-G	Homo	INTERGENIC
SBS	Chr8	24316434	T-C	Hetero	INTERGENIC
SBS	Chr9	909980	C-T	Hetero	INTERGENIC
SBS	Chr9	22505252	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	5300893	C-T	Homo	INTERGENIC
SBS	Chr11	13395659	C-A	Hetero	INTERGENIC
SBS	Chr11	29343778	G-A	Hetero	INTERGENIC
SBS	Chr12	3313443	A-C	Homo	INTRON
SBS	Chr12	4243822	C-T	Homo	INTERGENIC
SBS	Chr12	8523631	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	8321029	8321038	9
Deletion	Chr2	9449001	9585000	135999	6
Deletion	Chr5	11357316	11357319	3
Deletion	Chr11	18059981	18059986	5
Deletion	Chr4	18881067	18881077	10
Deletion	Chr5	19528009	19528011	2
Deletion	Chr3	20012687	20012690	3
Deletion	Chr4	20670623	20670624	1	OsKitaake04g111800
Deletion	Chr5	21592904	21592927	23
Deletion	Chr5	21888885	21888887	2
Deletion	Chr11	26234614	26234616	2
Deletion	Chr7	29451001	29500000	48999	10
Deletion	Chr6	30051119	30051128	9
Deletion	Chr3	33914134	33914135	1
Deletion	Chr1	34483793	34483809	16
Deletion	Chr1	39502994	39502998	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4487690	5185907	OsKitaake10g033300
Inversion	Chr10	4487697	5185908	OsKitaake10g033300
Inversion	Chr2	21880250	21955086	OsKitaake02g212900
Inversion	Chr2	21880288	21955094	OsKitaake02g212900
Inversion	Chr9	22501878	22637188	OsKitaake09g204900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes