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Mutant Information

Mutant Name	FN2645-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2645-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10994663 T-A Hetero INTRON
SBS Chr1 21194574 G-T Hetero INTERGENIC
SBS Chr1 24496302 A-T Hetero INTRON
SBS Chr1 42138698 C-T Hetero INTERGENIC
SBS Chr2 1753615 G-A Hetero INTERGENIC
SBS Chr2 1753616 T-A Hetero INTERGENIC
SBS Chr2 2593010 A-T Hetero INTERGENIC
SBS Chr2 8801907 G-A Hetero INTERGENIC
SBS Chr2 11219051 C-G Hetero UTR_5_PRIME
SBS Chr2 16181297 C-T Hetero INTERGENIC
SBS Chr2 18084722 T-C Hetero INTERGENIC
SBS Chr2 27827300 A-T Homo INTERGENIC
SBS Chr2 34472710 G-A Hetero INTERGENIC
SBS Chr3 4063986 C-T Hetero INTERGENIC
SBS Chr3 17028755 A-G Hetero INTERGENIC
SBS Chr3 25433876 C-T Homo INTERGENIC
SBS Chr3 28013120 A-T Homo SPLICE_SITE_REGION
SBS Chr3 28013289 G-C Homo INTRON
SBS Chr3 32944251 C-T Hetero INTERGENIC
SBS Chr3 34602681 G-T Hetero INTERGENIC
SBS Chr4 9546313 C-T Homo INTERGENIC
SBS Chr4 12697356 G-A Hetero INTERGENIC
SBS Chr4 33138871 A-G Homo UTR_3_PRIME
SBS Chr5 5799340 C-T Hetero INTERGENIC
SBS Chr5 22076590 G-A Hetero INTERGENIC
SBS Chr5 29667211 C-A Hetero INTERGENIC
SBS Chr5 29698027 A-T Hetero INTERGENIC
SBS Chr6 1405257 C-A Hetero INTERGENIC
SBS Chr6 6290346 C-T Homo INTERGENIC
SBS Chr6 12929462 G-A Hetero INTERGENIC
SBS Chr6 14100086 C-T Hetero INTERGENIC
SBS Chr7 11462224 T-C Hetero INTERGENIC
SBS Chr7 11747184 C-T Hetero INTERGENIC
SBS Chr7 23977678 T-A Hetero INTERGENIC
SBS Chr7 24707880 G-A Homo INTERGENIC
SBS Chr7 26942758 G-C Hetero UTR_5_PRIME
SBS Chr8 647841 T-C Homo INTERGENIC
SBS Chr8 9150042 A-G Hetero INTRON
SBS Chr8 11176224 A-G Hetero INTERGENIC
SBS Chr8 16500951 C-A Homo INTRON
SBS Chr8 22995304 G-T Homo NON_SYNONYMOUS_CODING OsKitaake08g176500
SBS Chr9 212553 A-C Hetero INTRON
SBS Chr9 14191227 T-C Hetero INTERGENIC
SBS Chr9 16984666 C-T Homo INTERGENIC
SBS Chr10 11117103 T-C Hetero INTERGENIC
SBS Chr11 19537778 A-G Hetero INTERGENIC
SBS Chr11 20576495 T-A Hetero INTERGENIC
SBS Chr11 20576499 G-A Hetero INTERGENIC
SBS Chr12 6292151 G-A Hetero INTERGENIC
SBS Chr12 8002031 T-G Hetero INTERGENIC
SBS Chr12 16173784 G-T Hetero INTERGENIC
SBS Chr12 22293729 T-C Homo INTERGENIC
SBS Chr12 25278633 C-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3076001 3146000 69999 6
Deletion Chr10 9397722 9397723 1
Deletion Chr11 10269212 10269214 2
Deletion Chr8 11065656 11065657 1
Deletion Chr10 11939445 11939449 4
Deletion Chr3 12009880 12009882 2 OsKitaake03g163300
Deletion Chr6 13252451 13252454 3
Deletion Chr4 13739215 13739218 3
Deletion Chr5 13954046 13954050 4
Deletion Chr7 14736625 14736627 2
Deletion Chr12 15358327 15358329 2
Deletion Chr1 16991744 16991751 7
Deletion Chr6 18099415 18099541 126
Deletion Chr6 19461922 19461923 1
Deletion Chr2 19538429 19538433 4
Deletion Chr7 20153232 20153243 11 OsKitaake07g165500
Deletion Chr5 20513545 20513547 2
Deletion Chr8 23202639 23202640 1
Deletion Chr3 24131147 24131163 16
Deletion Chr3 27727741 27727745 4
Deletion Chr7 28951797 28951809 12
Deletion Chr4 33139185 33139202 17

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 14627212 14627215 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 1876095 2010254 OsKitaake09g010700
Inversion Chr7 23724110 23726154 OsKitaake07g208400
Inversion Chr7 23724116 23726154 OsKitaake07g208400

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 1972349 Chr7 18672561
Translocation Chr9 1972527 Chr7 18672568

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10994663	T-A	Hetero	INTRON
SBS	Chr1	21194574	G-T	Hetero	INTERGENIC
SBS	Chr1	24496302	A-T	Hetero	INTRON
SBS	Chr1	42138698	C-T	Hetero	INTERGENIC
SBS	Chr2	1753615	G-A	Hetero	INTERGENIC
SBS	Chr2	1753616	T-A	Hetero	INTERGENIC
SBS	Chr2	2593010	A-T	Hetero	INTERGENIC
SBS	Chr2	8801907	G-A	Hetero	INTERGENIC
SBS	Chr2	11219051	C-G	Hetero	UTR_5_PRIME
SBS	Chr2	16181297	C-T	Hetero	INTERGENIC
SBS	Chr2	18084722	T-C	Hetero	INTERGENIC
SBS	Chr2	27827300	A-T	Homo	INTERGENIC
SBS	Chr2	34472710	G-A	Hetero	INTERGENIC
SBS	Chr3	4063986	C-T	Hetero	INTERGENIC
SBS	Chr3	17028755	A-G	Hetero	INTERGENIC
SBS	Chr3	25433876	C-T	Homo	INTERGENIC
SBS	Chr3	28013120	A-T	Homo	SPLICE_SITE_REGION
SBS	Chr3	28013289	G-C	Homo	INTRON
SBS	Chr3	32944251	C-T	Hetero	INTERGENIC
SBS	Chr3	34602681	G-T	Hetero	INTERGENIC
SBS	Chr4	9546313	C-T	Homo	INTERGENIC
SBS	Chr4	12697356	G-A	Hetero	INTERGENIC
SBS	Chr4	33138871	A-G	Homo	UTR_3_PRIME
SBS	Chr5	5799340	C-T	Hetero	INTERGENIC
SBS	Chr5	22076590	G-A	Hetero	INTERGENIC
SBS	Chr5	29667211	C-A	Hetero	INTERGENIC
SBS	Chr5	29698027	A-T	Hetero	INTERGENIC
SBS	Chr6	1405257	C-A	Hetero	INTERGENIC
SBS	Chr6	6290346	C-T	Homo	INTERGENIC
SBS	Chr6	12929462	G-A	Hetero	INTERGENIC
SBS	Chr6	14100086	C-T	Hetero	INTERGENIC
SBS	Chr7	11462224	T-C	Hetero	INTERGENIC
SBS	Chr7	11747184	C-T	Hetero	INTERGENIC
SBS	Chr7	23977678	T-A	Hetero	INTERGENIC
SBS	Chr7	24707880	G-A	Homo	INTERGENIC
SBS	Chr7	26942758	G-C	Hetero	UTR_5_PRIME
SBS	Chr8	647841	T-C	Homo	INTERGENIC
SBS	Chr8	9150042	A-G	Hetero	INTRON
SBS	Chr8	11176224	A-G	Hetero	INTERGENIC
SBS	Chr8	16500951	C-A	Homo	INTRON
SBS	Chr8	22995304	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g176500
SBS	Chr9	212553	A-C	Hetero	INTRON
SBS	Chr9	14191227	T-C	Hetero	INTERGENIC
SBS	Chr9	16984666	C-T	Homo	INTERGENIC
SBS	Chr10	11117103	T-C	Hetero	INTERGENIC
SBS	Chr11	19537778	A-G	Hetero	INTERGENIC
SBS	Chr11	20576495	T-A	Hetero	INTERGENIC
SBS	Chr11	20576499	G-A	Hetero	INTERGENIC
SBS	Chr12	6292151	G-A	Hetero	INTERGENIC
SBS	Chr12	8002031	T-G	Hetero	INTERGENIC
SBS	Chr12	16173784	G-T	Hetero	INTERGENIC
SBS	Chr12	22293729	T-C	Homo	INTERGENIC
SBS	Chr12	25278633	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3076001	3146000	69999	6
Deletion	Chr10	9397722	9397723	1
Deletion	Chr11	10269212	10269214	2
Deletion	Chr8	11065656	11065657	1
Deletion	Chr10	11939445	11939449	4
Deletion	Chr3	12009880	12009882	2	OsKitaake03g163300
Deletion	Chr6	13252451	13252454	3
Deletion	Chr4	13739215	13739218	3
Deletion	Chr5	13954046	13954050	4
Deletion	Chr7	14736625	14736627	2
Deletion	Chr12	15358327	15358329	2
Deletion	Chr1	16991744	16991751	7
Deletion	Chr6	18099415	18099541	126
Deletion	Chr6	19461922	19461923	1
Deletion	Chr2	19538429	19538433	4
Deletion	Chr7	20153232	20153243	11	OsKitaake07g165500
Deletion	Chr5	20513545	20513547	2
Deletion	Chr8	23202639	23202640	1
Deletion	Chr3	24131147	24131163	16
Deletion	Chr3	27727741	27727745	4
Deletion	Chr7	28951797	28951809	12
Deletion	Chr4	33139185	33139202	17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1876095	2010254	OsKitaake09g010700
Inversion	Chr7	23724110	23726154	OsKitaake07g208400
Inversion	Chr7	23724116	23726154	OsKitaake07g208400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes