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Mutant Information

Mutant Name	FN2646-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2646-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 65

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5992 G-T Homo INTERGENIC
SBS Chr1 6463900 T-A Homo INTERGENIC
SBS Chr1 20560497 C-T Hetero INTERGENIC
SBS Chr1 24394035 G-C Hetero INTERGENIC
SBS Chr1 24394036 C-G Hetero INTERGENIC
SBS Chr1 35775913 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 39916035 T-A Homo INTERGENIC
SBS Chr1 42728704 G-A Hetero INTERGENIC
SBS Chr2 11306279 C-T Hetero INTRON
SBS Chr2 17787798 G-T Hetero INTERGENIC
SBS Chr2 32005275 G-T Hetero INTERGENIC
SBS Chr2 36481636 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g387200
SBS Chr2 36481640 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g387200
SBS Chr3 4076450 G-A Hetero INTERGENIC
SBS Chr3 4076451 G-A Hetero INTERGENIC
SBS Chr3 13804378 A-G Hetero INTERGENIC
SBS Chr3 13884749 G-C Hetero INTERGENIC
SBS Chr3 19876088 C-T Hetero INTERGENIC
SBS Chr3 20503461 G-A Hetero INTERGENIC
SBS Chr3 25311083 T-C Hetero INTERGENIC
SBS Chr3 27829597 A-T Hetero INTERGENIC
SBS Chr3 32685041 C-T Homo INTERGENIC
SBS Chr3 32725938 A-G Hetero INTERGENIC
SBS Chr3 33616902 T-C Hetero INTRON
SBS Chr4 4082218 G-C Hetero INTERGENIC
SBS Chr4 14077306 T-G Homo INTERGENIC
SBS Chr4 14749150 T-C Homo INTERGENIC
SBS Chr4 16396850 C-A Hetero INTERGENIC
SBS Chr4 21029728 G-A Hetero INTERGENIC
SBS Chr5 6340630 C-A Hetero INTERGENIC
SBS Chr5 6835450 C-T Hetero INTERGENIC
SBS Chr5 11441089 A-G Hetero INTERGENIC
SBS Chr5 12451901 C-A Hetero INTERGENIC
SBS Chr5 14604220 G-A Hetero INTERGENIC
SBS Chr5 17316331 G-A Hetero INTERGENIC
SBS Chr5 20990380 T-C Hetero INTERGENIC
SBS Chr6 14863063 C-A Hetero INTERGENIC
SBS Chr6 18511862 C-T Hetero INTERGENIC
SBS Chr6 23823981 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 28842567 A-G Hetero INTERGENIC
SBS Chr7 2069360 C-T Hetero INTERGENIC
SBS Chr7 2246727 A-T Hetero INTERGENIC
SBS Chr7 2246728 T-A Hetero INTERGENIC
SBS Chr7 2246729 A-T Hetero INTERGENIC
SBS Chr7 11633293 C-T Hetero INTERGENIC
SBS Chr7 11807071 C-T Hetero INTERGENIC
SBS Chr7 15052291 G-T Hetero INTERGENIC
SBS Chr7 25788275 C-T Hetero INTERGENIC
SBS Chr8 1581191 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g019800
SBS Chr8 2778602 C-A Hetero INTERGENIC
SBS Chr8 5807132 C-T Hetero INTERGENIC
SBS Chr8 8071995 C-T Hetero INTERGENIC
SBS Chr8 17886508 G-C Hetero INTERGENIC
SBS Chr8 24618686 C-G Hetero INTRON
SBS Chr8 26165911 A-G Hetero INTRON
SBS Chr9 9307542 C-A Hetero INTRON
SBS Chr9 21519257 C-T Hetero INTERGENIC
SBS Chr10 14529222 T-A Hetero INTERGENIC
SBS Chr11 13305642 C-A Hetero INTERGENIC
SBS Chr12 4724677 C-T Hetero INTERGENIC
SBS Chr12 5599631 G-A Homo INTERGENIC
SBS Chr12 8531822 C-T Hetero INTERGENIC
SBS Chr12 10171187 C-T Hetero INTERGENIC
SBS Chr12 15551942 C-T Hetero INTERGENIC
SBS Chr12 16424211 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3689942 3689951 9 OsKitaake01g049300
Deletion Chr8 5400918 5400919 1
Deletion Chr2 10678384 10678388 4
Deletion Chr2 11440235 11440239 4
Deletion Chr6 11690981 11690982 1
Deletion Chr4 11940072 11940083 11
Deletion Chr7 13101077 13101091 14
Deletion Chr9 15090296 15090297 1
Deletion Chr9 15589941 15589947 6
Deletion Chr6 15756872 15757027 155
Deletion Chr9 17855854 17855858 4
Deletion Chr6 20895114 20895140 26
Deletion Chr9 21222090 21222092 2
Deletion Chr5 24767480 24767481 1
Deletion Chr4 27111983 27111994 11
Deletion Chr1 34918714 34918722 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 6696771 6696774 2
Insertion Chr2 36353340 36353342 1
Insertion Chr3 20702514 20702517 2
Insertion Chr7 17581410 17581413 2
Insertion Chr12 3509665 3509668 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 14630344 14694109
Inversion Chr10 14630354 14694116
Inversion Chr2 21026053 21753925
Inversion Chr2 21026061 21753940

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 7744296 Chr9 9297371 OsKitaake09g055500
Translocation Chr11 7744304 Chr9 9292104

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5992	G-T	Homo	INTERGENIC
SBS	Chr1	6463900	T-A	Homo	INTERGENIC
SBS	Chr1	20560497	C-T	Hetero	INTERGENIC
SBS	Chr1	24394035	G-C	Hetero	INTERGENIC
SBS	Chr1	24394036	C-G	Hetero	INTERGENIC
SBS	Chr1	35775913	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	39916035	T-A	Homo	INTERGENIC
SBS	Chr1	42728704	G-A	Hetero	INTERGENIC
SBS	Chr2	11306279	C-T	Hetero	INTRON
SBS	Chr2	17787798	G-T	Hetero	INTERGENIC
SBS	Chr2	32005275	G-T	Hetero	INTERGENIC
SBS	Chr2	36481636	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g387200
SBS	Chr2	36481640	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g387200
SBS	Chr3	4076450	G-A	Hetero	INTERGENIC
SBS	Chr3	4076451	G-A	Hetero	INTERGENIC
SBS	Chr3	13804378	A-G	Hetero	INTERGENIC
SBS	Chr3	13884749	G-C	Hetero	INTERGENIC
SBS	Chr3	19876088	C-T	Hetero	INTERGENIC
SBS	Chr3	20503461	G-A	Hetero	INTERGENIC
SBS	Chr3	25311083	T-C	Hetero	INTERGENIC
SBS	Chr3	27829597	A-T	Hetero	INTERGENIC
SBS	Chr3	32685041	C-T	Homo	INTERGENIC
SBS	Chr3	32725938	A-G	Hetero	INTERGENIC
SBS	Chr3	33616902	T-C	Hetero	INTRON
SBS	Chr4	4082218	G-C	Hetero	INTERGENIC
SBS	Chr4	14077306	T-G	Homo	INTERGENIC
SBS	Chr4	14749150	T-C	Homo	INTERGENIC
SBS	Chr4	16396850	C-A	Hetero	INTERGENIC
SBS	Chr4	21029728	G-A	Hetero	INTERGENIC
SBS	Chr5	6340630	C-A	Hetero	INTERGENIC
SBS	Chr5	6835450	C-T	Hetero	INTERGENIC
SBS	Chr5	11441089	A-G	Hetero	INTERGENIC
SBS	Chr5	12451901	C-A	Hetero	INTERGENIC
SBS	Chr5	14604220	G-A	Hetero	INTERGENIC
SBS	Chr5	17316331	G-A	Hetero	INTERGENIC
SBS	Chr5	20990380	T-C	Hetero	INTERGENIC
SBS	Chr6	14863063	C-A	Hetero	INTERGENIC
SBS	Chr6	18511862	C-T	Hetero	INTERGENIC
SBS	Chr6	23823981	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	28842567	A-G	Hetero	INTERGENIC
SBS	Chr7	2069360	C-T	Hetero	INTERGENIC
SBS	Chr7	2246727	A-T	Hetero	INTERGENIC
SBS	Chr7	2246728	T-A	Hetero	INTERGENIC
SBS	Chr7	2246729	A-T	Hetero	INTERGENIC
SBS	Chr7	11633293	C-T	Hetero	INTERGENIC
SBS	Chr7	11807071	C-T	Hetero	INTERGENIC
SBS	Chr7	15052291	G-T	Hetero	INTERGENIC
SBS	Chr7	25788275	C-T	Hetero	INTERGENIC
SBS	Chr8	1581191	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g019800
SBS	Chr8	2778602	C-A	Hetero	INTERGENIC
SBS	Chr8	5807132	C-T	Hetero	INTERGENIC
SBS	Chr8	8071995	C-T	Hetero	INTERGENIC
SBS	Chr8	17886508	G-C	Hetero	INTERGENIC
SBS	Chr8	24618686	C-G	Hetero	INTRON
SBS	Chr8	26165911	A-G	Hetero	INTRON
SBS	Chr9	9307542	C-A	Hetero	INTRON
SBS	Chr9	21519257	C-T	Hetero	INTERGENIC
SBS	Chr10	14529222	T-A	Hetero	INTERGENIC
SBS	Chr11	13305642	C-A	Hetero	INTERGENIC
SBS	Chr12	4724677	C-T	Hetero	INTERGENIC
SBS	Chr12	5599631	G-A	Homo	INTERGENIC
SBS	Chr12	8531822	C-T	Hetero	INTERGENIC
SBS	Chr12	10171187	C-T	Hetero	INTERGENIC
SBS	Chr12	15551942	C-T	Hetero	INTERGENIC
SBS	Chr12	16424211	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3689942	3689951	9	OsKitaake01g049300
Deletion	Chr8	5400918	5400919	1
Deletion	Chr2	10678384	10678388	4
Deletion	Chr2	11440235	11440239	4
Deletion	Chr6	11690981	11690982	1
Deletion	Chr4	11940072	11940083	11
Deletion	Chr7	13101077	13101091	14
Deletion	Chr9	15090296	15090297	1
Deletion	Chr9	15589941	15589947	6
Deletion	Chr6	15756872	15757027	155
Deletion	Chr9	17855854	17855858	4
Deletion	Chr6	20895114	20895140	26
Deletion	Chr9	21222090	21222092	2
Deletion	Chr5	24767480	24767481	1
Deletion	Chr4	27111983	27111994	11
Deletion	Chr1	34918714	34918722	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	14630344	14694109
Inversion	Chr10	14630354	14694116
Inversion	Chr2	21026053	21753925
Inversion	Chr2	21026061	21753940

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes