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Mutant Information

Mutant Name	FN2646-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2646-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 67

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5992 G-T Homo INTERGENIC
SBS Chr1 6463900 T-A Homo INTERGENIC
SBS Chr1 24394035 G-C Hetero INTERGENIC
SBS Chr1 24394036 C-G Hetero INTERGENIC
SBS Chr1 30963280 A-T Hetero INTERGENIC
SBS Chr1 39916035 T-A Homo INTERGENIC
SBS Chr1 40432268 A-G Hetero INTERGENIC
SBS Chr2 5323643 C-G Hetero INTERGENIC
SBS Chr2 20040585 C-T Hetero INTERGENIC
SBS Chr2 26467181 G-A Hetero INTERGENIC
SBS Chr2 32005275 G-T Hetero INTERGENIC
SBS Chr2 36481636 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g387200
SBS Chr2 36481640 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g387200
SBS Chr3 4076450 G-A Hetero INTERGENIC
SBS Chr3 4076451 G-A Hetero INTERGENIC
SBS Chr3 16256247 G-T Hetero INTERGENIC
SBS Chr3 19876088 C-T Hetero INTERGENIC
SBS Chr3 25311083 T-C Hetero INTERGENIC
SBS Chr3 25785383 T-C Hetero INTERGENIC
SBS Chr3 27829597 A-T Hetero INTERGENIC
SBS Chr3 30937011 G-A Hetero INTERGENIC
SBS Chr3 32685041 C-T Homo INTERGENIC
SBS Chr3 33616902 T-C Hetero INTRON
SBS Chr4 4082218 G-C Hetero INTERGENIC
SBS Chr4 14077306 T-G Homo INTERGENIC
SBS Chr4 14749150 T-C Homo INTERGENIC
SBS Chr4 16675074 A-G Hetero INTRON
SBS Chr4 17233664 G-A Hetero INTERGENIC
SBS Chr4 21029728 G-A Hetero INTERGENIC
SBS Chr4 31636619 C-T Hetero INTERGENIC
SBS Chr5 4547304 G-C Hetero INTERGENIC
SBS Chr5 6340630 C-A Hetero INTERGENIC
SBS Chr5 11441089 A-G Hetero INTERGENIC
SBS Chr5 20990380 T-C Hetero INTERGENIC
SBS Chr6 14863063 C-A Hetero INTERGENIC
SBS Chr6 18511862 C-T Hetero INTERGENIC
SBS Chr6 23823981 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 2246727 A-T Hetero INTERGENIC
SBS Chr7 2246728 T-A Hetero INTERGENIC
SBS Chr7 2246729 A-T Hetero INTERGENIC
SBS Chr7 9364605 C-T Hetero INTERGENIC
SBS Chr7 9655958 T-C Hetero INTERGENIC
SBS Chr7 10902690 G-A Hetero UTR_5_PRIME
SBS Chr7 10980257 C-T Hetero INTERGENIC
SBS Chr7 11633293 C-T Hetero INTERGENIC
SBS Chr7 11807071 C-T Hetero INTERGENIC
SBS Chr8 2778602 C-A Hetero INTERGENIC
SBS Chr8 5807132 C-T Hetero INTERGENIC
SBS Chr8 8071995 C-T Hetero INTERGENIC
SBS Chr8 8703776 G-T Hetero INTERGENIC
SBS Chr8 24092805 C-T Hetero INTERGENIC
SBS Chr8 26253052 C-T Hetero INTERGENIC
SBS Chr8 28349350 C-T Hetero UTR_3_PRIME
SBS Chr8 29087291 G-A Hetero INTERGENIC
SBS Chr9 2853464 C-A Hetero INTERGENIC
SBS Chr9 4538077 C-T Hetero INTERGENIC
SBS Chr9 5247583 G-T Hetero INTERGENIC
SBS Chr9 9307542 C-A Hetero INTRON
SBS Chr10 2391383 C-T Hetero INTERGENIC
SBS Chr10 14529222 T-A Hetero INTERGENIC
SBS Chr11 3045154 T-A Hetero INTERGENIC
SBS Chr11 5400657 C-T Hetero INTERGENIC
SBS Chr11 9599534 T-A Hetero INTERGENIC
SBS Chr12 5599631 G-A Homo INTERGENIC
SBS Chr12 9686918 G-T Hetero INTERGENIC
SBS Chr12 12461504 A-G Hetero INTERGENIC
SBS Chr12 18240187 A-G Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3689942 3689951 9 OsKitaake01g049300
Deletion Chr8 5400918 5400919 1
Deletion Chr2 10678384 10678388 4
Deletion Chr2 11440235 11440239 4
Deletion Chr6 11690981 11690982 1
Deletion Chr4 11940072 11940083 11
Deletion Chr9 15090296 15090297 1
Deletion Chr9 15589941 15589947 6
Deletion Chr9 17855854 17855858 4
Deletion Chr9 21222090 21222092 2
Deletion Chr5 24767480 24767481 1
Deletion Chr8 26222893 26222895 2
Deletion Chr4 27111983 27111994 11
Deletion Chr1 34918714 34918722 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 6696771 6696774 2
Insertion Chr2 10216098 10216103 4
Insertion Chr3 7585156 7585160 3
Insertion Chr3 20702514 20702517 2
Insertion Chr12 3509665 3509668 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 14630344 14694109
Inversion Chr10 14630354 14694116
Inversion Chr2 21026053 21753925
Inversion Chr2 21026061 21753940

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 7744296 Chr9 9297371 OsKitaake09g055500
Translocation Chr11 7744304 Chr9 9292104

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5992	G-T	Homo	INTERGENIC
SBS	Chr1	6463900	T-A	Homo	INTERGENIC
SBS	Chr1	24394035	G-C	Hetero	INTERGENIC
SBS	Chr1	24394036	C-G	Hetero	INTERGENIC
SBS	Chr1	30963280	A-T	Hetero	INTERGENIC
SBS	Chr1	39916035	T-A	Homo	INTERGENIC
SBS	Chr1	40432268	A-G	Hetero	INTERGENIC
SBS	Chr2	5323643	C-G	Hetero	INTERGENIC
SBS	Chr2	20040585	C-T	Hetero	INTERGENIC
SBS	Chr2	26467181	G-A	Hetero	INTERGENIC
SBS	Chr2	32005275	G-T	Hetero	INTERGENIC
SBS	Chr2	36481636	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g387200
SBS	Chr2	36481640	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g387200
SBS	Chr3	4076450	G-A	Hetero	INTERGENIC
SBS	Chr3	4076451	G-A	Hetero	INTERGENIC
SBS	Chr3	16256247	G-T	Hetero	INTERGENIC
SBS	Chr3	19876088	C-T	Hetero	INTERGENIC
SBS	Chr3	25311083	T-C	Hetero	INTERGENIC
SBS	Chr3	25785383	T-C	Hetero	INTERGENIC
SBS	Chr3	27829597	A-T	Hetero	INTERGENIC
SBS	Chr3	30937011	G-A	Hetero	INTERGENIC
SBS	Chr3	32685041	C-T	Homo	INTERGENIC
SBS	Chr3	33616902	T-C	Hetero	INTRON
SBS	Chr4	4082218	G-C	Hetero	INTERGENIC
SBS	Chr4	14077306	T-G	Homo	INTERGENIC
SBS	Chr4	14749150	T-C	Homo	INTERGENIC
SBS	Chr4	16675074	A-G	Hetero	INTRON
SBS	Chr4	17233664	G-A	Hetero	INTERGENIC
SBS	Chr4	21029728	G-A	Hetero	INTERGENIC
SBS	Chr4	31636619	C-T	Hetero	INTERGENIC
SBS	Chr5	4547304	G-C	Hetero	INTERGENIC
SBS	Chr5	6340630	C-A	Hetero	INTERGENIC
SBS	Chr5	11441089	A-G	Hetero	INTERGENIC
SBS	Chr5	20990380	T-C	Hetero	INTERGENIC
SBS	Chr6	14863063	C-A	Hetero	INTERGENIC
SBS	Chr6	18511862	C-T	Hetero	INTERGENIC
SBS	Chr6	23823981	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	2246727	A-T	Hetero	INTERGENIC
SBS	Chr7	2246728	T-A	Hetero	INTERGENIC
SBS	Chr7	2246729	A-T	Hetero	INTERGENIC
SBS	Chr7	9364605	C-T	Hetero	INTERGENIC
SBS	Chr7	9655958	T-C	Hetero	INTERGENIC
SBS	Chr7	10902690	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	10980257	C-T	Hetero	INTERGENIC
SBS	Chr7	11633293	C-T	Hetero	INTERGENIC
SBS	Chr7	11807071	C-T	Hetero	INTERGENIC
SBS	Chr8	2778602	C-A	Hetero	INTERGENIC
SBS	Chr8	5807132	C-T	Hetero	INTERGENIC
SBS	Chr8	8071995	C-T	Hetero	INTERGENIC
SBS	Chr8	8703776	G-T	Hetero	INTERGENIC
SBS	Chr8	24092805	C-T	Hetero	INTERGENIC
SBS	Chr8	26253052	C-T	Hetero	INTERGENIC
SBS	Chr8	28349350	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	29087291	G-A	Hetero	INTERGENIC
SBS	Chr9	2853464	C-A	Hetero	INTERGENIC
SBS	Chr9	4538077	C-T	Hetero	INTERGENIC
SBS	Chr9	5247583	G-T	Hetero	INTERGENIC
SBS	Chr9	9307542	C-A	Hetero	INTRON
SBS	Chr10	2391383	C-T	Hetero	INTERGENIC
SBS	Chr10	14529222	T-A	Hetero	INTERGENIC
SBS	Chr11	3045154	T-A	Hetero	INTERGENIC
SBS	Chr11	5400657	C-T	Hetero	INTERGENIC
SBS	Chr11	9599534	T-A	Hetero	INTERGENIC
SBS	Chr12	5599631	G-A	Homo	INTERGENIC
SBS	Chr12	9686918	G-T	Hetero	INTERGENIC
SBS	Chr12	12461504	A-G	Hetero	INTERGENIC
SBS	Chr12	18240187	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3689942	3689951	9	OsKitaake01g049300
Deletion	Chr8	5400918	5400919	1
Deletion	Chr2	10678384	10678388	4
Deletion	Chr2	11440235	11440239	4
Deletion	Chr6	11690981	11690982	1
Deletion	Chr4	11940072	11940083	11
Deletion	Chr9	15090296	15090297	1
Deletion	Chr9	15589941	15589947	6
Deletion	Chr9	17855854	17855858	4
Deletion	Chr9	21222090	21222092	2
Deletion	Chr5	24767480	24767481	1
Deletion	Chr8	26222893	26222895	2
Deletion	Chr4	27111983	27111994	11
Deletion	Chr1	34918714	34918722	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	14630344	14694109
Inversion	Chr10	14630354	14694116
Inversion	Chr2	21026053	21753925
Inversion	Chr2	21026061	21753940

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes