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Mutant Information

Mutant Name	FN2647-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2647-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 112

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4047507	A-G	Hetero	UTR_5_PRIME
SBS	Chr1	7632826	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g095900
SBS	Chr1	8468856	T-C	Hetero	INTERGENIC
SBS	Chr1	14902451	G-A	Hetero	INTRON
SBS	Chr1	16093871	G-A	Hetero	INTERGENIC
SBS	Chr1	27047842	T-C	Hetero	INTERGENIC
SBS	Chr1	36686341	G-A	Hetero	UTR_5_PRIME
SBS	Chr1	40809108	C-G	Hetero	INTERGENIC
SBS	Chr2	10052019	C-T	Hetero	INTERGENIC
SBS	Chr2	19552283	G-A	Homo	INTERGENIC
SBS	Chr2	19634059	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	30502908	C-T	Hetero	INTERGENIC
SBS	Chr2	34353582	G-T	Hetero	INTRON
SBS	Chr3	923209	T-C	Hetero	INTERGENIC
SBS	Chr3	10038325	G-A	Homo	INTERGENIC
SBS	Chr3	20166044	C-T	Hetero	INTERGENIC
SBS	Chr3	21706286	C-A	Hetero	INTERGENIC
SBS	Chr3	23236167	A-T	Hetero	INTRON
SBS	Chr3	24140880	C-T	Hetero	INTERGENIC
SBS	Chr3	27097484	C-T	Hetero	INTERGENIC
SBS	Chr3	29277699	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g305100
SBS	Chr3	31497555	C-T	Hetero	INTERGENIC
SBS	Chr3	32119586	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	37760904	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	1412449	C-A	Hetero	INTERGENIC
SBS	Chr4	1747629	G-T	Hetero	INTERGENIC
SBS	Chr4	6477374	G-A	Homo	INTERGENIC
SBS	Chr4	7348274	C-T	Homo	INTERGENIC
SBS	Chr4	8586863	A-G	Hetero	INTERGENIC
SBS	Chr4	14573717	A-T	Homo	INTERGENIC
SBS	Chr4	14573718	A-T	Homo	INTERGENIC
SBS	Chr4	16838158	C-T	Hetero	INTERGENIC
SBS	Chr4	17033549	A-T	Homo	INTERGENIC
SBS	Chr4	33911258	C-A	Hetero	INTERGENIC
SBS	Chr4	34924599	G-T	Hetero	INTERGENIC
SBS	Chr4	35154104	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	36740408	T-C	Hetero	INTRON
SBS	Chr5	2438290	C-T	Hetero	INTRON
SBS	Chr5	7949810	T-A	Hetero	INTERGENIC
SBS	Chr5	10366036	G-A	Homo	INTERGENIC
SBS	Chr5	13664937	A-G	Hetero	INTRON
SBS	Chr5	17038028	G-A	Hetero	INTERGENIC
SBS	Chr5	18373352	G-A	Hetero	INTERGENIC
SBS	Chr5	21090594	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g169700
SBS	Chr5	22093005	G-A	Homo	INTERGENIC
SBS	Chr5	25667896	T-A	Hetero	INTERGENIC
SBS	Chr6	6688479	G-A	Hetero	INTERGENIC
SBS	Chr6	7317147	C-A	Hetero	INTERGENIC
SBS	Chr6	10954475	T-C	Hetero	START_GAINED
SBS	Chr6	11947603	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g129700
SBS	Chr6	13122372	G-A	Hetero	INTERGENIC
SBS	Chr6	13521816	T-C	Hetero	INTERGENIC
SBS	Chr6	17947325	C-A	Hetero	INTERGENIC
SBS	Chr6	18870785	G-A	Hetero	INTERGENIC
SBS	Chr6	20020602	G-C	Hetero	INTERGENIC
SBS	Chr6	21231222	G-T	Hetero	INTERGENIC
SBS	Chr6	23472788	A-T	Hetero	INTERGENIC
SBS	Chr7	717412	G-T	Homo	INTERGENIC
SBS	Chr7	908647	T-A	Hetero	INTERGENIC
SBS	Chr7	10835806	C-T	Hetero	INTERGENIC
SBS	Chr7	11386039	G-A	Hetero	INTERGENIC
SBS	Chr7	17275652	C-T	Hetero	INTERGENIC
SBS	Chr7	18237584	C-G	Hetero	UTR_5_PRIME
SBS	Chr7	20294907	A-T	Hetero	INTERGENIC
SBS	Chr7	26825612	G-A	Hetero	INTERGENIC
SBS	Chr8	2182261	A-T	Hetero	INTERGENIC
SBS	Chr8	5531150	C-A	Hetero	INTERGENIC
SBS	Chr8	12149103	C-A	Hetero	INTERGENIC
SBS	Chr8	13131151	C-T	Hetero	INTERGENIC
SBS	Chr8	15849100	C-G	Hetero	INTERGENIC
SBS	Chr8	17673769	C-G	Hetero	INTERGENIC
SBS	Chr8	18662736	G-T	Hetero	INTERGENIC
SBS	Chr8	19644783	A-G	Hetero	INTERGENIC
SBS	Chr8	22433445	C-G	Hetero	INTERGENIC
SBS	Chr8	23743604	T-A	Hetero	STOP_GAINED	OsKitaake08g183200
SBS	Chr8	24450034	C-T	Hetero	INTERGENIC
SBS	Chr9	7956917	G-A	Hetero	INTERGENIC
SBS	Chr9	10237740	C-G	Hetero	INTERGENIC
SBS	Chr9	11215441	G-A	Homo	INTERGENIC
SBS	Chr9	13620699	A-G	Hetero	INTERGENIC
SBS	Chr9	15362184	T-C	Hetero	INTERGENIC
SBS	Chr9	15362188	T-A	Hetero	INTERGENIC
SBS	Chr9	15362192	G-T	Hetero	INTERGENIC
SBS	Chr9	21792249	A-T	Homo	INTERGENIC
SBS	Chr9	21883715	G-A	Homo	INTRON
SBS	Chr9	22028122	C-G	Homo	INTERGENIC
SBS	Chr10	310701	A-T	Hetero	INTRON
SBS	Chr10	1188113	G-T	Hetero	UTR_3_PRIME
SBS	Chr10	6084444	T-A	Homo	INTRON
SBS	Chr10	6309542	G-A	Hetero	INTERGENIC
SBS	Chr10	12791570	C-A	Hetero	INTRON
SBS	Chr10	13440171	A-G	Homo	INTERGENIC
SBS	Chr10	19081889	G-A	Hetero	INTRON
SBS	Chr10	20726372	C-T	Hetero	INTERGENIC
SBS	Chr10	21780325	A-G	Hetero	INTERGENIC
SBS	Chr11	946334	A-G	Hetero	INTERGENIC
SBS	Chr11	3337593	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g046300
SBS	Chr11	5344144	G-T	Hetero	INTERGENIC
SBS	Chr11	14144272	G-T	Hetero	INTERGENIC
SBS	Chr11	15588351	C-T	Hetero	INTERGENIC
SBS	Chr11	20131359	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g157442
SBS	Chr11	21885542	T-C	Hetero	INTRON
SBS	Chr11	21939277	C-A	Hetero	INTERGENIC
SBS	Chr12	7257419	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g080600
SBS	Chr12	9081843	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g090132
SBS	Chr12	12046911	G-A	Hetero	INTERGENIC
SBS	Chr12	14028463	A-C	Homo	INTERGENIC
SBS	Chr12	14724258	T-C	Hetero	INTERGENIC
SBS	Chr12	19943088	A-T	Hetero	INTERGENIC
SBS	Chr12	21146365	C-G	Homo	INTERGENIC
SBS	Chr12	24416167	G-A	Hetero	INTERGENIC
SBS	Chr12	24435514	T-C	Hetero	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2981837	2981842	5
Deletion	Chr12	2987496	2987498	2
Deletion	Chr1	6658418	6658419	1
Deletion	Chr9	7797284	7797291	7
Deletion	Chr9	8326586	8326590	4
Deletion	Chr8	10169073	10169075	2
Deletion	Chr6	10483979	10483987	8
Deletion	Chr11	10864116	10864118	2
Deletion	Chr3	11405568	11405570	2
Deletion	Chr11	13318709	13318712	3
Deletion	Chr2	15347077	15347090	13
Deletion	Chr10	17814518	17814526	8
Deletion	Chr6	18125001	18210000	84999	4
Deletion	Chr4	18154945	18154949	4
Deletion	Chr6	19541985	19541991	6
Deletion	Chr4	20099734	20099744	10
Deletion	Chr6	20348241	20348244	3
Deletion	Chr3	22940297	22940299	2
Deletion	Chr11	23173815	23173817	2
Deletion	Chr10	23782227	23782228	1
Deletion	Chr5	25285018	25285020	2
Deletion	Chr6	25998104	25998112	8
Deletion	Chr5	28310109	28310114	5
Deletion	Chr8	28551148	28551156	8
Deletion	Chr4	30372410	30372415	5
Deletion	Chr2	31016093	31016119	26

Insertions: 8

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	37849493	37849496	2
Insertion	Chr1	41466522	41466527	4
Insertion	Chr2	36300796	36300799	2
Insertion	Chr3	2398235	2398238	2
Insertion	Chr7	1254156	1254159	2
Insertion	Chr9	1077197	1077200	2
Insertion	Chr11	1940349	1940354	4
Insertion	Chr11	11204776	11204778	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7557149	8398657
Inversion	Chr9	8104413	8121030	OsKitaake09g045700
Inversion	Chr9	8104429	8121029	OsKitaake09g045700
Inversion	Chr8	28140987	28647706
Inversion	Chr3	37757807	37786433
Inversion	Chr3	37757820	37758198

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	15004852	Chr8	28647711
Translocation	Chr10	15004866	Chr8	28649801
Translocation	Chr8	23261620	Chr7	22956155
Translocation	Chr8	28141011	Chr1	18432932

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes