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Mutant Information

Mutant Name	FN2648-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2648-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 62

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8599431 C-G Homo INTERGENIC
SBS Chr1 10876175 G-A Hetero INTERGENIC
SBS Chr1 14941149 G-A Hetero INTERGENIC
SBS Chr1 23273629 C-T Homo INTERGENIC
SBS Chr1 31604767 G-A Hetero INTERGENIC
SBS Chr2 14814086 C-G Hetero INTERGENIC
SBS Chr2 15399155 G-A Hetero INTRON
SBS Chr2 18057959 C-T Hetero INTERGENIC
SBS Chr2 23669467 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g232400
SBS Chr2 26494092 G-A Hetero UTR_3_PRIME
SBS Chr2 27222355 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g273500
SBS Chr2 27222362 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g273500
SBS Chr2 31632999 G-A Homo INTERGENIC
SBS Chr2 36938882 G-C Homo INTRON
SBS Chr3 10623423 A-G Hetero INTERGENIC
SBS Chr3 12356168 A-G Homo INTERGENIC
SBS Chr3 16752567 C-T Homo INTERGENIC
SBS Chr3 22959225 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g248200
SBS Chr3 33432028 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g357500
SBS Chr3 37003615 G-A Hetero INTRON
SBS Chr4 2424255 C-T Hetero INTRON
SBS Chr4 13771644 C-A Hetero INTERGENIC
SBS Chr4 16027547 T-A Hetero INTERGENIC
SBS Chr4 26012597 G-A Hetero INTRON
SBS Chr4 27405302 G-A Homo INTERGENIC
SBS Chr4 31724718 G-A Hetero INTERGENIC
SBS Chr4 36694360 A-G Hetero INTERGENIC
SBS Chr5 5921893 C-T Hetero INTERGENIC
SBS Chr5 12159768 C-T Hetero INTERGENIC
SBS Chr5 23092514 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g192200
SBS Chr5 27492201 T-C Homo INTERGENIC
SBS Chr5 28690182 C-T Hetero INTERGENIC
SBS Chr5 29106934 C-T Hetero INTRON
SBS Chr5 29982794 A-T Hetero INTERGENIC
SBS Chr6 4608493 G-A Hetero INTERGENIC
SBS Chr6 6070251 T-C Hetero INTERGENIC
SBS Chr6 6162796 T-C Hetero INTERGENIC
SBS Chr6 12209370 G-A Hetero INTRON
SBS Chr6 16791153 C-A Hetero INTRON
SBS Chr6 19746776 A-T Hetero INTERGENIC
SBS Chr7 2909970 A-G Homo INTERGENIC
SBS Chr7 4693309 C-T Homo UTR_3_PRIME
SBS Chr7 9469695 G-T Hetero INTERGENIC
SBS Chr8 7406015 C-A Hetero INTERGENIC
SBS Chr8 7898921 G-A Homo INTERGENIC
SBS Chr8 17708969 G-A Homo INTERGENIC
SBS Chr8 19771266 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g145500
SBS Chr8 24740375 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g193100
SBS Chr8 29195881 T-A Hetero INTERGENIC
SBS Chr10 6712722 G-T Hetero INTERGENIC
SBS Chr10 7499579 G-A Homo UTR_3_PRIME
SBS Chr10 8078456 C-T Hetero INTRON
SBS Chr10 15457882 G-A Hetero INTERGENIC
SBS Chr11 4322050 A-C Hetero INTERGENIC
SBS Chr11 9896012 G-A Hetero INTERGENIC
SBS Chr11 14018875 G-C Hetero INTERGENIC
SBS Chr11 25926907 G-C Hetero INTERGENIC
SBS Chr12 1856872 C-T Hetero UTR_5_PRIME
SBS Chr12 8957491 C-T Hetero INTERGENIC
SBS Chr12 10365575 G-A Hetero UTR_3_PRIME
SBS Chr12 14126473 T-A Hetero UTR_3_PRIME
SBS Chr12 14267047 A-G Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1153869 1153898 29
Deletion Chr4 2049895 2049897 2
Deletion Chr1 7939329 7939331 2
Deletion Chr6 8819078 8819079 1
Deletion Chr3 9591414 9591418 4 OsKitaake03g130400
Deletion Chr5 10702235 10702246 11
Deletion Chr1 12654411 12654412 1
Deletion Chr3 12789734 12789738 4
Deletion Chr12 13775001 13832000 56999 5
Deletion Chr6 15758741 15758897 156
Deletion Chr5 17900413 17900415 2
Deletion Chr7 20791362 20791364 2
Deletion Chr8 22232001 22314000 81999 2
Deletion Chr11 24526151 24526152 1
Deletion Chr12 24733768 24733791 23
Deletion Chr5 25259341 25259343 2
Deletion Chr4 26521614 26521622 8
Deletion Chr1 26967445 26967447 2
Deletion Chr4 28552396 28552397 1
Deletion Chr1 32145761 32145768 7
Deletion Chr1 32161694 32161695 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 22411876 22411879 2
Insertion Chr10 10606822 10606825 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 2979888 3047888
Inversion Chr4 2979913 3047897
Inversion Chr9 14290716 15199101 OsKitaake09g106100
Inversion Chr9 14290723 15199108 OsKitaake09g106100
Inversion Chr2 28167975 28238981

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 16336654 Chr2 18057367 OsKitaake10g110200
Translocation Chr10 16337953 Chr2 18057366 OsKitaake10g110200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8599431	C-G	Homo	INTERGENIC
SBS	Chr1	10876175	G-A	Hetero	INTERGENIC
SBS	Chr1	14941149	G-A	Hetero	INTERGENIC
SBS	Chr1	23273629	C-T	Homo	INTERGENIC
SBS	Chr1	31604767	G-A	Hetero	INTERGENIC
SBS	Chr2	14814086	C-G	Hetero	INTERGENIC
SBS	Chr2	15399155	G-A	Hetero	INTRON
SBS	Chr2	18057959	C-T	Hetero	INTERGENIC
SBS	Chr2	23669467	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g232400
SBS	Chr2	26494092	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	27222355	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g273500
SBS	Chr2	27222362	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g273500
SBS	Chr2	31632999	G-A	Homo	INTERGENIC
SBS	Chr2	36938882	G-C	Homo	INTRON
SBS	Chr3	10623423	A-G	Hetero	INTERGENIC
SBS	Chr3	12356168	A-G	Homo	INTERGENIC
SBS	Chr3	16752567	C-T	Homo	INTERGENIC
SBS	Chr3	22959225	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g248200
SBS	Chr3	33432028	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g357500
SBS	Chr3	37003615	G-A	Hetero	INTRON
SBS	Chr4	2424255	C-T	Hetero	INTRON
SBS	Chr4	13771644	C-A	Hetero	INTERGENIC
SBS	Chr4	16027547	T-A	Hetero	INTERGENIC
SBS	Chr4	26012597	G-A	Hetero	INTRON
SBS	Chr4	27405302	G-A	Homo	INTERGENIC
SBS	Chr4	31724718	G-A	Hetero	INTERGENIC
SBS	Chr4	36694360	A-G	Hetero	INTERGENIC
SBS	Chr5	5921893	C-T	Hetero	INTERGENIC
SBS	Chr5	12159768	C-T	Hetero	INTERGENIC
SBS	Chr5	23092514	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g192200
SBS	Chr5	27492201	T-C	Homo	INTERGENIC
SBS	Chr5	28690182	C-T	Hetero	INTERGENIC
SBS	Chr5	29106934	C-T	Hetero	INTRON
SBS	Chr5	29982794	A-T	Hetero	INTERGENIC
SBS	Chr6	4608493	G-A	Hetero	INTERGENIC
SBS	Chr6	6070251	T-C	Hetero	INTERGENIC
SBS	Chr6	6162796	T-C	Hetero	INTERGENIC
SBS	Chr6	12209370	G-A	Hetero	INTRON
SBS	Chr6	16791153	C-A	Hetero	INTRON
SBS	Chr6	19746776	A-T	Hetero	INTERGENIC
SBS	Chr7	2909970	A-G	Homo	INTERGENIC
SBS	Chr7	4693309	C-T	Homo	UTR_3_PRIME
SBS	Chr7	9469695	G-T	Hetero	INTERGENIC
SBS	Chr8	7406015	C-A	Hetero	INTERGENIC
SBS	Chr8	7898921	G-A	Homo	INTERGENIC
SBS	Chr8	17708969	G-A	Homo	INTERGENIC
SBS	Chr8	19771266	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g145500
SBS	Chr8	24740375	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g193100
SBS	Chr8	29195881	T-A	Hetero	INTERGENIC
SBS	Chr10	6712722	G-T	Hetero	INTERGENIC
SBS	Chr10	7499579	G-A	Homo	UTR_3_PRIME
SBS	Chr10	8078456	C-T	Hetero	INTRON
SBS	Chr10	15457882	G-A	Hetero	INTERGENIC
SBS	Chr11	4322050	A-C	Hetero	INTERGENIC
SBS	Chr11	9896012	G-A	Hetero	INTERGENIC
SBS	Chr11	14018875	G-C	Hetero	INTERGENIC
SBS	Chr11	25926907	G-C	Hetero	INTERGENIC
SBS	Chr12	1856872	C-T	Hetero	UTR_5_PRIME
SBS	Chr12	8957491	C-T	Hetero	INTERGENIC
SBS	Chr12	10365575	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	14126473	T-A	Hetero	UTR_3_PRIME
SBS	Chr12	14267047	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1153869	1153898	29
Deletion	Chr4	2049895	2049897	2
Deletion	Chr1	7939329	7939331	2
Deletion	Chr6	8819078	8819079	1
Deletion	Chr3	9591414	9591418	4	OsKitaake03g130400
Deletion	Chr5	10702235	10702246	11
Deletion	Chr1	12654411	12654412	1
Deletion	Chr3	12789734	12789738	4
Deletion	Chr12	13775001	13832000	56999	5
Deletion	Chr6	15758741	15758897	156
Deletion	Chr5	17900413	17900415	2
Deletion	Chr7	20791362	20791364	2
Deletion	Chr8	22232001	22314000	81999	2
Deletion	Chr11	24526151	24526152	1
Deletion	Chr12	24733768	24733791	23
Deletion	Chr5	25259341	25259343	2
Deletion	Chr4	26521614	26521622	8
Deletion	Chr1	26967445	26967447	2
Deletion	Chr4	28552396	28552397	1
Deletion	Chr1	32145761	32145768	7
Deletion	Chr1	32161694	32161695	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2979888	3047888
Inversion	Chr4	2979913	3047897
Inversion	Chr9	14290716	15199101	OsKitaake09g106100
Inversion	Chr9	14290723	15199108	OsKitaake09g106100
Inversion	Chr2	28167975	28238981

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes