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Mutant Information

Mutant Name	FN2649-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2649-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 71

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 190105 C-T Hetero INTERGENIC
SBS Chr1 6781341 T-A Hetero INTERGENIC
SBS Chr1 13546692 G-A Hetero INTERGENIC
SBS Chr1 26160633 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 32646878 C-A Hetero INTERGENIC
SBS Chr1 33135382 C-T Hetero INTERGENIC
SBS Chr1 38328398 C-T Hetero INTRON
SBS Chr1 41925812 T-A Hetero INTERGENIC
SBS Chr1 41925813 C-A Hetero INTERGENIC
SBS Chr2 25578545 A-G Homo INTRON
SBS Chr2 26308983 A-T Homo INTRON
SBS Chr2 28264888 T-G Hetero INTERGENIC
SBS Chr2 28264889 G-A Hetero INTERGENIC
SBS Chr2 28264891 G-A Hetero INTERGENIC
SBS Chr2 28279234 C-G Hetero INTERGENIC
SBS Chr2 29571172 T-A Hetero INTRON
SBS Chr2 30900290 C-T Hetero INTERGENIC
SBS Chr3 6314251 G-A Hetero INTERGENIC
SBS Chr3 9659965 G-A Hetero INTERGENIC
SBS Chr3 10530357 C-T Homo INTRON
SBS Chr3 15592929 G-A Hetero INTERGENIC
SBS Chr3 23029008 C-T Hetero INTERGENIC
SBS Chr3 28855760 C-A Hetero INTERGENIC
SBS Chr3 29465289 C-T Hetero INTERGENIC
SBS Chr3 32396158 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 32396159 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g343100
SBS Chr4 581073 A-G Hetero INTERGENIC
SBS Chr4 17870719 T-A Hetero INTERGENIC
SBS Chr4 26457329 C-T Hetero INTERGENIC
SBS Chr5 1913143 C-A Hetero INTERGENIC
SBS Chr5 3286910 G-A Hetero INTERGENIC
SBS Chr5 9339231 G-A Hetero INTERGENIC
SBS Chr5 9503106 T-C Hetero INTRON
SBS Chr5 20522757 T-A Hetero INTERGENIC
SBS Chr5 22838978 G-T Hetero INTERGENIC
SBS Chr5 29912385 C-G Homo INTRON
SBS Chr6 2735698 A-G Hetero INTERGENIC
SBS Chr6 20020849 A-G Hetero INTERGENIC
SBS Chr6 22430725 T-C Hetero INTERGENIC
SBS Chr6 29617455 C-T Hetero INTERGENIC
SBS Chr7 5948869 A-T Hetero INTERGENIC
SBS Chr7 9369176 A-G Hetero INTERGENIC
SBS Chr7 14744512 C-T Hetero INTERGENIC
SBS Chr7 16185315 G-A Hetero INTERGENIC
SBS Chr7 28916417 G-A Hetero INTERGENIC
SBS Chr8 2481638 C-T Hetero INTERGENIC
SBS Chr8 3369826 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g037800
SBS Chr8 3369827 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g037800
SBS Chr8 13271310 T-C Hetero INTERGENIC
SBS Chr8 13788877 C-A Hetero INTERGENIC
SBS Chr9 2410215 C-T Homo INTERGENIC
SBS Chr9 11371764 A-T Hetero INTERGENIC
SBS Chr9 14667797 G-A Hetero INTERGENIC
SBS Chr9 17035627 G-C Hetero INTERGENIC
SBS Chr9 17271517 C-A Hetero SYNONYMOUS_CODING
SBS Chr9 21867282 G-C Hetero INTRON
SBS Chr10 1344595 G-T Hetero INTERGENIC
SBS Chr10 18596611 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g132100
SBS Chr10 24002564 A-G Hetero INTERGENIC
SBS Chr11 1075463 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 1691626 T-C Hetero INTERGENIC
SBS Chr11 3075486 C-A Hetero INTERGENIC
SBS Chr11 3326345 T-G Hetero INTERGENIC
SBS Chr11 20169247 G-A Hetero INTERGENIC
SBS Chr11 20444408 T-C Homo INTERGENIC
SBS Chr11 20603314 G-A Hetero INTERGENIC
SBS Chr12 8515358 G-A Hetero INTERGENIC
SBS Chr12 9669300 C-T Hetero INTERGENIC
SBS Chr12 12300053 T-G Homo INTERGENIC
SBS Chr12 15342715 A-G Hetero INTERGENIC
SBS Chr12 18420210 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1145666 1145667 1
Deletion Chr11 2232236 2232237 1
Deletion Chr10 4457686 4457693 7
Deletion Chr12 9057067 9057069 2
Deletion Chr10 9567199 9567200 1 OsKitaake10g055800
Deletion Chr2 11476184 11476188 4
Deletion Chr10 11708407 11708408 1
Deletion Chr11 20027434 20027435 1
Deletion Chr8 20754112 20754120 8
Deletion Chr6 22121098 22121102 4
Deletion Chr1 23901929 23901935 6
Deletion Chr6 26237028 26237037 9
Deletion Chr4 27389031 27389048 17
Deletion Chr1 29369497 29369498 1
Deletion Chr2 34706763 34706765 2
Deletion Chr3 36958668 36958670 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19879671 19879674 2
Insertion Chr2 27539645 27539648 2
Insertion Chr6 3817465 3817468 2
Insertion Chr6 10037106 10037109 2
Insertion Chr9 14425984 14425986 1
Insertion Chr10 22567317 22567320 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 8051558 8292803 OsKitaake02g105600
Inversion Chr2 8051572 8320121

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 12077613 Chr4 26650797 2
Translocation Chr11 12089554 Chr4 26650798 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	190105	C-T	Hetero	INTERGENIC
SBS	Chr1	6781341	T-A	Hetero	INTERGENIC
SBS	Chr1	13546692	G-A	Hetero	INTERGENIC
SBS	Chr1	26160633	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	32646878	C-A	Hetero	INTERGENIC
SBS	Chr1	33135382	C-T	Hetero	INTERGENIC
SBS	Chr1	38328398	C-T	Hetero	INTRON
SBS	Chr1	41925812	T-A	Hetero	INTERGENIC
SBS	Chr1	41925813	C-A	Hetero	INTERGENIC
SBS	Chr2	25578545	A-G	Homo	INTRON
SBS	Chr2	26308983	A-T	Homo	INTRON
SBS	Chr2	28264888	T-G	Hetero	INTERGENIC
SBS	Chr2	28264889	G-A	Hetero	INTERGENIC
SBS	Chr2	28264891	G-A	Hetero	INTERGENIC
SBS	Chr2	28279234	C-G	Hetero	INTERGENIC
SBS	Chr2	29571172	T-A	Hetero	INTRON
SBS	Chr2	30900290	C-T	Hetero	INTERGENIC
SBS	Chr3	6314251	G-A	Hetero	INTERGENIC
SBS	Chr3	9659965	G-A	Hetero	INTERGENIC
SBS	Chr3	10530357	C-T	Homo	INTRON
SBS	Chr3	15592929	G-A	Hetero	INTERGENIC
SBS	Chr3	23029008	C-T	Hetero	INTERGENIC
SBS	Chr3	28855760	C-A	Hetero	INTERGENIC
SBS	Chr3	29465289	C-T	Hetero	INTERGENIC
SBS	Chr3	32396158	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	32396159	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g343100
SBS	Chr4	581073	A-G	Hetero	INTERGENIC
SBS	Chr4	17870719	T-A	Hetero	INTERGENIC
SBS	Chr4	26457329	C-T	Hetero	INTERGENIC
SBS	Chr5	1913143	C-A	Hetero	INTERGENIC
SBS	Chr5	3286910	G-A	Hetero	INTERGENIC
SBS	Chr5	9339231	G-A	Hetero	INTERGENIC
SBS	Chr5	9503106	T-C	Hetero	INTRON
SBS	Chr5	20522757	T-A	Hetero	INTERGENIC
SBS	Chr5	22838978	G-T	Hetero	INTERGENIC
SBS	Chr5	29912385	C-G	Homo	INTRON
SBS	Chr6	2735698	A-G	Hetero	INTERGENIC
SBS	Chr6	20020849	A-G	Hetero	INTERGENIC
SBS	Chr6	22430725	T-C	Hetero	INTERGENIC
SBS	Chr6	29617455	C-T	Hetero	INTERGENIC
SBS	Chr7	5948869	A-T	Hetero	INTERGENIC
SBS	Chr7	9369176	A-G	Hetero	INTERGENIC
SBS	Chr7	14744512	C-T	Hetero	INTERGENIC
SBS	Chr7	16185315	G-A	Hetero	INTERGENIC
SBS	Chr7	28916417	G-A	Hetero	INTERGENIC
SBS	Chr8	2481638	C-T	Hetero	INTERGENIC
SBS	Chr8	3369826	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g037800
SBS	Chr8	3369827	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g037800
SBS	Chr8	13271310	T-C	Hetero	INTERGENIC
SBS	Chr8	13788877	C-A	Hetero	INTERGENIC
SBS	Chr9	2410215	C-T	Homo	INTERGENIC
SBS	Chr9	11371764	A-T	Hetero	INTERGENIC
SBS	Chr9	14667797	G-A	Hetero	INTERGENIC
SBS	Chr9	17035627	G-C	Hetero	INTERGENIC
SBS	Chr9	17271517	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	21867282	G-C	Hetero	INTRON
SBS	Chr10	1344595	G-T	Hetero	INTERGENIC
SBS	Chr10	18596611	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g132100
SBS	Chr10	24002564	A-G	Hetero	INTERGENIC
SBS	Chr11	1075463	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	1691626	T-C	Hetero	INTERGENIC
SBS	Chr11	3075486	C-A	Hetero	INTERGENIC
SBS	Chr11	3326345	T-G	Hetero	INTERGENIC
SBS	Chr11	20169247	G-A	Hetero	INTERGENIC
SBS	Chr11	20444408	T-C	Homo	INTERGENIC
SBS	Chr11	20603314	G-A	Hetero	INTERGENIC
SBS	Chr12	8515358	G-A	Hetero	INTERGENIC
SBS	Chr12	9669300	C-T	Hetero	INTERGENIC
SBS	Chr12	12300053	T-G	Homo	INTERGENIC
SBS	Chr12	15342715	A-G	Hetero	INTERGENIC
SBS	Chr12	18420210	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1145666	1145667	1
Deletion	Chr11	2232236	2232237	1
Deletion	Chr10	4457686	4457693	7
Deletion	Chr12	9057067	9057069	2
Deletion	Chr10	9567199	9567200	1	OsKitaake10g055800
Deletion	Chr2	11476184	11476188	4
Deletion	Chr10	11708407	11708408	1
Deletion	Chr11	20027434	20027435	1
Deletion	Chr8	20754112	20754120	8
Deletion	Chr6	22121098	22121102	4
Deletion	Chr1	23901929	23901935	6
Deletion	Chr6	26237028	26237037	9
Deletion	Chr4	27389031	27389048	17
Deletion	Chr1	29369497	29369498	1
Deletion	Chr2	34706763	34706765	2
Deletion	Chr3	36958668	36958670	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8051558	8292803	OsKitaake02g105600
Inversion	Chr2	8051572	8320121

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes