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Mutant Information

Mutant Name	FN2650-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2650-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16587500 G-A Hetero INTERGENIC
SBS Chr1 23550690 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 28780583 A-G Hetero INTERGENIC
SBS Chr1 37153409 G-C Homo INTERGENIC
SBS Chr2 4744589 T-A Hetero INTRON
SBS Chr2 34903321 G-A Hetero INTERGENIC
SBS Chr3 5179699 C-T Hetero INTERGENIC
SBS Chr3 9645786 T-G Homo INTERGENIC
SBS Chr3 17220411 T-A Hetero INTERGENIC
SBS Chr3 28147618 T-A Hetero INTERGENIC
SBS Chr4 810483 C-T Hetero INTERGENIC
SBS Chr4 1671481 G-A Hetero INTERGENIC
SBS Chr4 7336556 A-G Hetero INTRON
SBS Chr4 15581306 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g074900
SBS Chr4 16909110 C-A Hetero INTERGENIC
SBS Chr4 18231803 C-G Hetero INTERGENIC
SBS Chr4 18466453 A-G Hetero INTERGENIC
SBS Chr4 21711084 G-A Hetero INTERGENIC
SBS Chr4 22486611 G-A Hetero INTERGENIC
SBS Chr4 25764945 A-G Hetero UTR_3_PRIME
SBS Chr4 27697330 A-T Hetero INTERGENIC
SBS Chr4 30580416 G-A Homo INTERGENIC
SBS Chr5 911211 G-C Hetero INTERGENIC
SBS Chr5 2610467 C-A Hetero INTERGENIC
SBS Chr5 7384763 A-C Hetero INTERGENIC
SBS Chr5 7536525 G-A Hetero INTERGENIC
SBS Chr5 15077373 A-G Homo INTERGENIC
SBS Chr5 16419297 G-A Homo INTERGENIC
SBS Chr5 19903370 C-T Hetero INTERGENIC
SBS Chr5 21214253 A-C Hetero INTERGENIC
SBS Chr6 9031932 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g108600
SBS Chr6 11087707 G-A Hetero INTERGENIC
SBS Chr6 11584594 C-A Hetero INTERGENIC
SBS Chr6 15523311 G-C Hetero INTERGENIC
SBS Chr6 18190900 C-T Hetero INTRON
SBS Chr6 24297053 A-T Homo INTERGENIC
SBS Chr6 26981087 T-C Hetero INTRON
SBS Chr7 8736118 C-G Hetero INTERGENIC
SBS Chr7 10325603 T-G Hetero INTERGENIC
SBS Chr7 10404372 G-A Hetero INTERGENIC
SBS Chr7 18658721 G-A Hetero INTERGENIC
SBS Chr7 18658724 G-A Hetero INTERGENIC
SBS Chr7 24196581 T-C Homo INTERGENIC
SBS Chr8 19245715 G-A Homo INTERGENIC
SBS Chr8 26707038 G-A Hetero UTR_3_PRIME
SBS Chr9 6790187 G-T Hetero INTERGENIC
SBS Chr9 11091367 A-G Hetero INTRON
SBS Chr9 12736060 C-T Hetero INTERGENIC
SBS Chr9 16329893 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g118100
SBS Chr10 5818984 C-G Hetero INTERGENIC
SBS Chr10 21613709 G-A Homo INTERGENIC
SBS Chr11 354195 G-C Homo INTERGENIC
SBS Chr11 354198 C-A Homo INTERGENIC
SBS Chr11 18372336 G-A Hetero INTERGENIC
SBS Chr11 19505088 T-A Hetero INTERGENIC
SBS Chr11 19505090 G-A Hetero INTERGENIC
SBS Chr11 25299533 G-T Hetero INTERGENIC
SBS Chr11 28245751 C-G Hetero INTERGENIC
SBS Chr12 7847763 C-T Hetero INTERGENIC
SBS Chr12 9021904 G-A Homo INTRON
SBS Chr12 9680426 C-T Homo INTERGENIC
SBS Chr12 10107931 G-A Hetero INTERGENIC
SBS Chr12 10799140 A-C Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 799324 799331 7
Deletion Chr8 1216979 1216981 2
Deletion Chr10 2586734 2586743 9
Deletion Chr5 2794326 2794333 7 OsKitaake05g032100
Deletion Chr11 3428586 3428588 2
Deletion Chr2 9681901 9681902 1
Deletion Chr5 11524285 11524287 2
Deletion Chr12 14101539 14101549 10
Deletion Chr12 14506252 14506253 1
Deletion Chr1 15428562 15428566 4
Deletion Chr9 16896304 16896306 2
Deletion Chr11 19000001 19451000 450999 35
Deletion Chr6 20767507 20767508 1
Deletion Chr2 22646196 22646198 2
Deletion Chr6 23357548 23357549 1
Deletion Chr5 28563412 28563413 1
Deletion Chr1 33045679 33045681 2
Deletion Chr4 36339316 36339319 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23632411 23632414 2
Insertion Chr1 29201755 29201759 3
Insertion Chr12 4279856 4279862 5

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 3387867 3433664
Inversion Chr11 7502691 7921272
Inversion Chr11 7502702 7921292
Inversion Chr1 9890475 10032088

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 21896692 Chr1 10032085 OsKitaake11g173200
Translocation Chr11 21896694 Chr1 10030978 OsKitaake11g173200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16587500	G-A	Hetero	INTERGENIC
SBS	Chr1	23550690	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	28780583	A-G	Hetero	INTERGENIC
SBS	Chr1	37153409	G-C	Homo	INTERGENIC
SBS	Chr2	4744589	T-A	Hetero	INTRON
SBS	Chr2	34903321	G-A	Hetero	INTERGENIC
SBS	Chr3	5179699	C-T	Hetero	INTERGENIC
SBS	Chr3	9645786	T-G	Homo	INTERGENIC
SBS	Chr3	17220411	T-A	Hetero	INTERGENIC
SBS	Chr3	28147618	T-A	Hetero	INTERGENIC
SBS	Chr4	810483	C-T	Hetero	INTERGENIC
SBS	Chr4	1671481	G-A	Hetero	INTERGENIC
SBS	Chr4	7336556	A-G	Hetero	INTRON
SBS	Chr4	15581306	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g074900
SBS	Chr4	16909110	C-A	Hetero	INTERGENIC
SBS	Chr4	18231803	C-G	Hetero	INTERGENIC
SBS	Chr4	18466453	A-G	Hetero	INTERGENIC
SBS	Chr4	21711084	G-A	Hetero	INTERGENIC
SBS	Chr4	22486611	G-A	Hetero	INTERGENIC
SBS	Chr4	25764945	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	27697330	A-T	Hetero	INTERGENIC
SBS	Chr4	30580416	G-A	Homo	INTERGENIC
SBS	Chr5	911211	G-C	Hetero	INTERGENIC
SBS	Chr5	2610467	C-A	Hetero	INTERGENIC
SBS	Chr5	7384763	A-C	Hetero	INTERGENIC
SBS	Chr5	7536525	G-A	Hetero	INTERGENIC
SBS	Chr5	15077373	A-G	Homo	INTERGENIC
SBS	Chr5	16419297	G-A	Homo	INTERGENIC
SBS	Chr5	19903370	C-T	Hetero	INTERGENIC
SBS	Chr5	21214253	A-C	Hetero	INTERGENIC
SBS	Chr6	9031932	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g108600
SBS	Chr6	11087707	G-A	Hetero	INTERGENIC
SBS	Chr6	11584594	C-A	Hetero	INTERGENIC
SBS	Chr6	15523311	G-C	Hetero	INTERGENIC
SBS	Chr6	18190900	C-T	Hetero	INTRON
SBS	Chr6	24297053	A-T	Homo	INTERGENIC
SBS	Chr6	26981087	T-C	Hetero	INTRON
SBS	Chr7	8736118	C-G	Hetero	INTERGENIC
SBS	Chr7	10325603	T-G	Hetero	INTERGENIC
SBS	Chr7	10404372	G-A	Hetero	INTERGENIC
SBS	Chr7	18658721	G-A	Hetero	INTERGENIC
SBS	Chr7	18658724	G-A	Hetero	INTERGENIC
SBS	Chr7	24196581	T-C	Homo	INTERGENIC
SBS	Chr8	19245715	G-A	Homo	INTERGENIC
SBS	Chr8	26707038	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	6790187	G-T	Hetero	INTERGENIC
SBS	Chr9	11091367	A-G	Hetero	INTRON
SBS	Chr9	12736060	C-T	Hetero	INTERGENIC
SBS	Chr9	16329893	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g118100
SBS	Chr10	5818984	C-G	Hetero	INTERGENIC
SBS	Chr10	21613709	G-A	Homo	INTERGENIC
SBS	Chr11	354195	G-C	Homo	INTERGENIC
SBS	Chr11	354198	C-A	Homo	INTERGENIC
SBS	Chr11	18372336	G-A	Hetero	INTERGENIC
SBS	Chr11	19505088	T-A	Hetero	INTERGENIC
SBS	Chr11	19505090	G-A	Hetero	INTERGENIC
SBS	Chr11	25299533	G-T	Hetero	INTERGENIC
SBS	Chr11	28245751	C-G	Hetero	INTERGENIC
SBS	Chr12	7847763	C-T	Hetero	INTERGENIC
SBS	Chr12	9021904	G-A	Homo	INTRON
SBS	Chr12	9680426	C-T	Homo	INTERGENIC
SBS	Chr12	10107931	G-A	Hetero	INTERGENIC
SBS	Chr12	10799140	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	799324	799331	7
Deletion	Chr8	1216979	1216981	2
Deletion	Chr10	2586734	2586743	9
Deletion	Chr5	2794326	2794333	7	OsKitaake05g032100
Deletion	Chr11	3428586	3428588	2
Deletion	Chr2	9681901	9681902	1
Deletion	Chr5	11524285	11524287	2
Deletion	Chr12	14101539	14101549	10
Deletion	Chr12	14506252	14506253	1
Deletion	Chr1	15428562	15428566	4
Deletion	Chr9	16896304	16896306	2
Deletion	Chr11	19000001	19451000	450999	35
Deletion	Chr6	20767507	20767508	1
Deletion	Chr2	22646196	22646198	2
Deletion	Chr6	23357548	23357549	1
Deletion	Chr5	28563412	28563413	1
Deletion	Chr1	33045679	33045681	2
Deletion	Chr4	36339316	36339319	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3387867	3433664
Inversion	Chr11	7502691	7921272
Inversion	Chr11	7502702	7921292
Inversion	Chr1	9890475	10032088

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes