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Mutant Information

Mutant Name	FN2651-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2651-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 75

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8350256 C-T Hetero INTERGENIC
SBS Chr1 10358280 C-T Hetero INTERGENIC
SBS Chr1 17624922 G-T Hetero INTERGENIC
SBS Chr1 19503683 A-T Hetero INTERGENIC
SBS Chr1 19980603 A-G Hetero INTERGENIC
SBS Chr1 20460048 G-A Hetero INTERGENIC
SBS Chr1 20460049 G-A Hetero INTERGENIC
SBS Chr1 25327405 A-T Hetero INTERGENIC
SBS Chr1 36142089 T-A Hetero INTERGENIC
SBS Chr2 10621079 G-T Hetero INTERGENIC
SBS Chr4 7093531 C-A Hetero INTERGENIC
SBS Chr4 14466555 G-A Hetero UTR_3_PRIME
SBS Chr4 14466556 G-A Hetero UTR_3_PRIME
SBS Chr4 14934565 G-T Hetero STOP_GAINED OsKitaake04g071000
SBS Chr4 26670868 C-A Homo NON_SYNONYMOUS_CODING OsKitaake04g192400
SBS Chr4 27433896 A-G Homo INTERGENIC
SBS Chr5 10132893 T-C Hetero INTERGENIC
SBS Chr5 11398453 G-A Hetero INTERGENIC
SBS Chr5 13265074 C-A Hetero INTERGENIC
SBS Chr5 15075624 C-T Hetero INTERGENIC
SBS Chr5 28920187 C-A Hetero INTERGENIC
SBS Chr6 2967679 A-G Hetero INTERGENIC
SBS Chr6 19987737 C-T Hetero INTERGENIC
SBS Chr6 20550446 G-T Hetero INTERGENIC
SBS Chr8 3815008 G-T Hetero INTERGENIC
SBS Chr8 14940150 C-A Hetero INTERGENIC
SBS Chr8 19000615 C-T Hetero INTERGENIC
SBS Chr8 20831591 C-T Homo INTERGENIC
SBS Chr8 27980732 C-T Homo INTRON
SBS Chr9 6352049 T-C Hetero INTERGENIC
SBS Chr9 10395865 G-A Hetero INTERGENIC
SBS Chr10 3325123 T-A Homo INTERGENIC
SBS Chr10 4400941 A-G Hetero INTERGENIC
SBS Chr10 8758454 A-G Hetero INTERGENIC
SBS Chr10 9946720 T-C Hetero INTERGENIC
SBS Chr10 12010554 C-A Hetero INTERGENIC
SBS Chr11 12875358 G-A Hetero INTERGENIC
SBS Chr11 19101779 C-A Hetero INTERGENIC
SBS Chr11 27208106 C-T Hetero INTERGENIC
SBS Chr12 11935364 T-C Hetero INTERGENIC
SBS Chr12 19878516 T-A Hetero INTERGENIC
SBS Chr1 19503683 A-T Hetero INTERGENIC
SBS Chr1 20460048 G-A Hetero INTERGENIC
SBS Chr1 20460049 G-A Hetero INTERGENIC
SBS Chr1 25327405 A-T Hetero INTERGENIC
SBS Chr1 36142089 T-A Hetero INTERGENIC
SBS Chr2 10621079 G-T Hetero INTERGENIC
SBS Chr2 10868431 A-G Hetero INTERGENIC
SBS Chr2 24492807 G-A Homo SYNONYMOUS_CODING
SBS Chr2 34942299 T-C Hetero INTRON
SBS Chr4 6599641 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g033500
SBS Chr4 14466555 G-A Hetero UTR_3_PRIME
SBS Chr4 14466556 G-A Hetero UTR_3_PRIME
SBS Chr4 14934565 G-T Hetero STOP_GAINED OsKitaake04g071000
SBS Chr4 23431520 T-C Hetero INTERGENIC
SBS Chr4 26670868 C-A Homo NON_SYNONYMOUS_CODING OsKitaake04g192400
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr4 27433896 A-G Homo INTERGENIC
SBS Chr5 13265074 C-A Hetero INTERGENIC
SBS Chr5 15075624 C-T Hetero INTERGENIC
SBS Chr5 28920187 C-A Hetero INTERGENIC
SBS Chr6 2967679 A-G Hetero INTERGENIC
SBS Chr6 19115874 G-A Homo INTRON
SBS Chr6 27246312 C-A Hetero INTERGENIC
SBS Chr7 21137434 C-A Hetero UTR_3_PRIME
SBS Chr8 14940150 C-A Hetero INTERGENIC
SBS Chr8 20831591 C-T Homo INTERGENIC
SBS Chr8 27980732 C-T Homo INTRON
SBS Chr9 6352049 T-C Hetero INTERGENIC
SBS Chr10 3325123 T-A Homo INTERGENIC
SBS Chr10 9946720 T-C Hetero INTERGENIC
SBS Chr10 12502188 G-A Hetero UTR_3_PRIME
SBS Chr11 16284673 G-A Hetero INTERGENIC
SBS Chr11 19101779 C-A Hetero INTERGENIC
SBS Chr12 19878516 T-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3644735 3644736 1
Deletion Chr11 4411203 4411206 3
Deletion Chr9 6212367 6212368 1
Deletion Chr11 7219424 7219435 11 2
Deletion Chr4 9158229 9158231 2
Deletion Chr2 11262347 11262348 1
Deletion Chr12 11394612 11394613 1
Deletion Chr12 11946742 11946743 1
Deletion Chr4 12304104 12304106 2
Deletion Chr4 12409061 12409066 5
Deletion Chr6 13446072 13446080 8 2
Deletion Chr6 14800155 14800156 1 2
Deletion Chr3 16784617 16784618 1 2
Deletion Chr11 17851009 17851015 6
Deletion Chr7 19501882 19501884 2
Deletion Chr1 22930771 22930773 2 2
Deletion Chr7 23540833 23540834 1
Deletion Chr4 28065023 28065025 2 2
Deletion Chr3 33307941 33307948 7
Deletion Chr3 33375543 33375553 10
Deletion Chr1 42164565 42164580 15 OsKitaake01g463400
Deletion Chr1 43733073 43733077 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 32961813 32961820 6
Insertion Chr5 10666261 10666265 3
Insertion Chr2 10699739 10699742 2
Insertion Chr4 9496147 9496149 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 252033 Chr2 6027923

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8350256	C-T	Hetero	INTERGENIC
SBS	Chr1	10358280	C-T	Hetero	INTERGENIC
SBS	Chr1	17624922	G-T	Hetero	INTERGENIC
SBS	Chr1	19503683	A-T	Hetero	INTERGENIC
SBS	Chr1	19980603	A-G	Hetero	INTERGENIC
SBS	Chr1	20460048	G-A	Hetero	INTERGENIC
SBS	Chr1	20460049	G-A	Hetero	INTERGENIC
SBS	Chr1	25327405	A-T	Hetero	INTERGENIC
SBS	Chr1	36142089	T-A	Hetero	INTERGENIC
SBS	Chr2	10621079	G-T	Hetero	INTERGENIC
SBS	Chr4	7093531	C-A	Hetero	INTERGENIC
SBS	Chr4	14466555	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	14466556	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	14934565	G-T	Hetero	STOP_GAINED	OsKitaake04g071000
SBS	Chr4	26670868	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g192400
SBS	Chr4	27433896	A-G	Homo	INTERGENIC
SBS	Chr5	10132893	T-C	Hetero	INTERGENIC
SBS	Chr5	11398453	G-A	Hetero	INTERGENIC
SBS	Chr5	13265074	C-A	Hetero	INTERGENIC
SBS	Chr5	15075624	C-T	Hetero	INTERGENIC
SBS	Chr5	28920187	C-A	Hetero	INTERGENIC
SBS	Chr6	2967679	A-G	Hetero	INTERGENIC
SBS	Chr6	19987737	C-T	Hetero	INTERGENIC
SBS	Chr6	20550446	G-T	Hetero	INTERGENIC
SBS	Chr8	3815008	G-T	Hetero	INTERGENIC
SBS	Chr8	14940150	C-A	Hetero	INTERGENIC
SBS	Chr8	19000615	C-T	Hetero	INTERGENIC
SBS	Chr8	20831591	C-T	Homo	INTERGENIC
SBS	Chr8	27980732	C-T	Homo	INTRON
SBS	Chr9	6352049	T-C	Hetero	INTERGENIC
SBS	Chr9	10395865	G-A	Hetero	INTERGENIC
SBS	Chr10	3325123	T-A	Homo	INTERGENIC
SBS	Chr10	4400941	A-G	Hetero	INTERGENIC
SBS	Chr10	8758454	A-G	Hetero	INTERGENIC
SBS	Chr10	9946720	T-C	Hetero	INTERGENIC
SBS	Chr10	12010554	C-A	Hetero	INTERGENIC
SBS	Chr11	12875358	G-A	Hetero	INTERGENIC
SBS	Chr11	19101779	C-A	Hetero	INTERGENIC
SBS	Chr11	27208106	C-T	Hetero	INTERGENIC
SBS	Chr12	11935364	T-C	Hetero	INTERGENIC
SBS	Chr12	19878516	T-A	Hetero	INTERGENIC
SBS	Chr1	19503683	A-T	Hetero	INTERGENIC
SBS	Chr1	20460048	G-A	Hetero	INTERGENIC
SBS	Chr1	20460049	G-A	Hetero	INTERGENIC
SBS	Chr1	25327405	A-T	Hetero	INTERGENIC
SBS	Chr1	36142089	T-A	Hetero	INTERGENIC
SBS	Chr2	10621079	G-T	Hetero	INTERGENIC
SBS	Chr2	10868431	A-G	Hetero	INTERGENIC
SBS	Chr2	24492807	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	34942299	T-C	Hetero	INTRON
SBS	Chr4	6599641	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g033500
SBS	Chr4	14466555	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	14466556	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	14934565	G-T	Hetero	STOP_GAINED	OsKitaake04g071000
SBS	Chr4	23431520	T-C	Hetero	INTERGENIC
SBS	Chr4	26670868	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g192400
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr4	27433896	A-G	Homo	INTERGENIC
SBS	Chr5	13265074	C-A	Hetero	INTERGENIC
SBS	Chr5	15075624	C-T	Hetero	INTERGENIC
SBS	Chr5	28920187	C-A	Hetero	INTERGENIC
SBS	Chr6	2967679	A-G	Hetero	INTERGENIC
SBS	Chr6	19115874	G-A	Homo	INTRON
SBS	Chr6	27246312	C-A	Hetero	INTERGENIC
SBS	Chr7	21137434	C-A	Hetero	UTR_3_PRIME
SBS	Chr8	14940150	C-A	Hetero	INTERGENIC
SBS	Chr8	20831591	C-T	Homo	INTERGENIC
SBS	Chr8	27980732	C-T	Homo	INTRON
SBS	Chr9	6352049	T-C	Hetero	INTERGENIC
SBS	Chr10	3325123	T-A	Homo	INTERGENIC
SBS	Chr10	9946720	T-C	Hetero	INTERGENIC
SBS	Chr10	12502188	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	16284673	G-A	Hetero	INTERGENIC
SBS	Chr11	19101779	C-A	Hetero	INTERGENIC
SBS	Chr12	19878516	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3644735	3644736	1
Deletion	Chr11	4411203	4411206	3
Deletion	Chr9	6212367	6212368	1
Deletion	Chr11	7219424	7219435	11	2
Deletion	Chr4	9158229	9158231	2
Deletion	Chr2	11262347	11262348	1
Deletion	Chr12	11394612	11394613	1
Deletion	Chr12	11946742	11946743	1
Deletion	Chr4	12304104	12304106	2
Deletion	Chr4	12409061	12409066	5
Deletion	Chr6	13446072	13446080	8	2
Deletion	Chr6	14800155	14800156	1	2
Deletion	Chr3	16784617	16784618	1	2
Deletion	Chr11	17851009	17851015	6
Deletion	Chr7	19501882	19501884	2
Deletion	Chr1	22930771	22930773	2	2
Deletion	Chr7	23540833	23540834	1
Deletion	Chr4	28065023	28065025	2	2
Deletion	Chr3	33307941	33307948	7
Deletion	Chr3	33375543	33375553	10
Deletion	Chr1	42164565	42164580	15	OsKitaake01g463400
Deletion	Chr1	43733073	43733077	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	252033	Chr2	6027923

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes