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Mutant Information

Mutant Name	FN2652-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2652-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11673637 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g140800
SBS Chr1 20312368 T-C Hetero INTERGENIC
SBS Chr1 39365212 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g424600
SBS Chr2 20411085 G-T Hetero INTERGENIC
SBS Chr2 32380012 G-A Hetero INTERGENIC
SBS Chr2 36235584 A-G Homo UTR_3_PRIME
SBS Chr3 6934474 G-A Hetero INTERGENIC
SBS Chr3 9821187 C-T Homo INTERGENIC
SBS Chr3 18173268 G-A Hetero INTERGENIC
SBS Chr3 25684533 A-G Hetero INTERGENIC
SBS Chr3 26535100 G-T Homo INTERGENIC
SBS Chr3 27155235 A-C Homo INTRON
SBS Chr3 31311245 G-A Hetero INTRON
SBS Chr4 9121563 G-A Hetero INTERGENIC
SBS Chr4 9563031 G-A Hetero INTERGENIC
SBS Chr5 682344 G-C Hetero INTERGENIC
SBS Chr5 6013893 G-A Hetero INTERGENIC
SBS Chr5 25507701 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g223200
SBS Chr6 21839149 C-T Hetero INTERGENIC
SBS Chr7 555720 G-A Hetero INTERGENIC
SBS Chr7 20982160 G-A Hetero INTERGENIC
SBS Chr7 23593766 C-T Hetero INTERGENIC
SBS Chr8 21737460 G-A Homo INTRON
SBS Chr8 21737462 G-A Homo INTRON
SBS Chr8 21799771 T-A Homo INTERGENIC
SBS Chr9 5674446 C-A Hetero INTERGENIC
SBS Chr9 11132658 G-T Hetero INTERGENIC
SBS Chr9 21051793 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g181000
SBS Chr9 21051794 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 21893066 C-G Hetero INTERGENIC
SBS Chr10 273638 T-A Homo INTERGENIC
SBS Chr11 4454045 G-A Hetero INTRON
SBS Chr11 9279742 C-A Hetero INTERGENIC
SBS Chr11 12358003 A-G Hetero INTERGENIC
SBS Chr11 13770095 C-T Hetero INTERGENIC
SBS Chr11 13770096 C-T Hetero INTERGENIC
SBS Chr11 14000766 A-G Hetero INTERGENIC
SBS Chr11 14657174 T-C Hetero INTERGENIC
SBS Chr11 20933871 A-G Hetero INTERGENIC
SBS Chr12 8579936 C-T Hetero INTERGENIC
SBS Chr12 11228819 C-T Homo INTERGENIC
SBS Chr12 16755911 A-C Hetero INTERGENIC
SBS Chr12 18853856 C-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 3145754 3145768 14
Deletion Chr7 3670316 3670317 1
Deletion Chr12 4148434 4148440 6
Deletion Chr2 7598171 7598196 25 OsKitaake02g100000
Deletion Chr7 9540560 9540576 16
Deletion Chr1 9647001 9659000 11999 OsKitaake01g123400
Deletion Chr12 11172973 11172990 17
Deletion Chr9 12280333 12280335 2
Deletion Chr4 13171382 13171383 1
Deletion Chr9 14373793 14373794 1
Deletion Chr1 16835322 16835323 1
Deletion Chr12 18734001 18778000 43999 2
Deletion Chr12 18782001 18836000 53999 OsKitaake12g138700
Deletion Chr3 19652846 19652847 1
Deletion Chr2 20079000 20079003 3
Deletion Chr11 25105189 25105190 1
Deletion Chr2 29512380 29512392 12
Deletion Chr4 31776284 31776287 3
Deletion Chr2 35685669 35685676 7 OsKitaake02g375200
Deletion Chr3 37070415 37070419 4
Deletion Chr1 37466102 37466104 2
Deletion Chr1 39680094 39680095 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 6671666 6671669 2
Insertion Chr5 29401543 29401546 2
Insertion Chr6 6132110 6132115 4
Insertion Chr8 23269457 23269462 4
Insertion Chr9 15338688 15338691 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 3459650 4243713 OsKitaake05g041700
Inversion Chr5 3459657 4243727 OsKitaake05g041700
Inversion Chr3 18436198 18483439 OsKitaake03g223900

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 4961907 Chr2 32213636 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11673637	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g140800
SBS	Chr1	20312368	T-C	Hetero	INTERGENIC
SBS	Chr1	39365212	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g424600
SBS	Chr2	20411085	G-T	Hetero	INTERGENIC
SBS	Chr2	32380012	G-A	Hetero	INTERGENIC
SBS	Chr2	36235584	A-G	Homo	UTR_3_PRIME
SBS	Chr3	6934474	G-A	Hetero	INTERGENIC
SBS	Chr3	9821187	C-T	Homo	INTERGENIC
SBS	Chr3	18173268	G-A	Hetero	INTERGENIC
SBS	Chr3	25684533	A-G	Hetero	INTERGENIC
SBS	Chr3	26535100	G-T	Homo	INTERGENIC
SBS	Chr3	27155235	A-C	Homo	INTRON
SBS	Chr3	31311245	G-A	Hetero	INTRON
SBS	Chr4	9121563	G-A	Hetero	INTERGENIC
SBS	Chr4	9563031	G-A	Hetero	INTERGENIC
SBS	Chr5	682344	G-C	Hetero	INTERGENIC
SBS	Chr5	6013893	G-A	Hetero	INTERGENIC
SBS	Chr5	25507701	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g223200
SBS	Chr6	21839149	C-T	Hetero	INTERGENIC
SBS	Chr7	555720	G-A	Hetero	INTERGENIC
SBS	Chr7	20982160	G-A	Hetero	INTERGENIC
SBS	Chr7	23593766	C-T	Hetero	INTERGENIC
SBS	Chr8	21737460	G-A	Homo	INTRON
SBS	Chr8	21737462	G-A	Homo	INTRON
SBS	Chr8	21799771	T-A	Homo	INTERGENIC
SBS	Chr9	5674446	C-A	Hetero	INTERGENIC
SBS	Chr9	11132658	G-T	Hetero	INTERGENIC
SBS	Chr9	21051793	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g181000
SBS	Chr9	21051794	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	21893066	C-G	Hetero	INTERGENIC
SBS	Chr10	273638	T-A	Homo	INTERGENIC
SBS	Chr11	4454045	G-A	Hetero	INTRON
SBS	Chr11	9279742	C-A	Hetero	INTERGENIC
SBS	Chr11	12358003	A-G	Hetero	INTERGENIC
SBS	Chr11	13770095	C-T	Hetero	INTERGENIC
SBS	Chr11	13770096	C-T	Hetero	INTERGENIC
SBS	Chr11	14000766	A-G	Hetero	INTERGENIC
SBS	Chr11	14657174	T-C	Hetero	INTERGENIC
SBS	Chr11	20933871	A-G	Hetero	INTERGENIC
SBS	Chr12	8579936	C-T	Hetero	INTERGENIC
SBS	Chr12	11228819	C-T	Homo	INTERGENIC
SBS	Chr12	16755911	A-C	Hetero	INTERGENIC
SBS	Chr12	18853856	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	3145754	3145768	14
Deletion	Chr7	3670316	3670317	1
Deletion	Chr12	4148434	4148440	6
Deletion	Chr2	7598171	7598196	25	OsKitaake02g100000
Deletion	Chr7	9540560	9540576	16
Deletion	Chr1	9647001	9659000	11999	OsKitaake01g123400
Deletion	Chr12	11172973	11172990	17
Deletion	Chr9	12280333	12280335	2
Deletion	Chr4	13171382	13171383	1
Deletion	Chr9	14373793	14373794	1
Deletion	Chr1	16835322	16835323	1
Deletion	Chr12	18734001	18778000	43999	2
Deletion	Chr12	18782001	18836000	53999	OsKitaake12g138700
Deletion	Chr3	19652846	19652847	1
Deletion	Chr2	20079000	20079003	3
Deletion	Chr11	25105189	25105190	1
Deletion	Chr2	29512380	29512392	12
Deletion	Chr4	31776284	31776287	3
Deletion	Chr2	35685669	35685676	7	OsKitaake02g375200
Deletion	Chr3	37070415	37070419	4
Deletion	Chr1	37466102	37466104	2
Deletion	Chr1	39680094	39680095	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3459650	4243713	OsKitaake05g041700
Inversion	Chr5	3459657	4243727	OsKitaake05g041700
Inversion	Chr3	18436198	18483439	OsKitaake03g223900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes