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| Mutant Information |
|---|
| Mutant Name | FN2652-S-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2652-S-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1143902 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 1978822 | C-A | Hetero | INTRON | |
| SBS | Chr1 | 18544942 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 7727109 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 25651210 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 36472605 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14158596 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14158599 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 17112883 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17454816 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19690066 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 22261298 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1722680 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4585207 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 13488208 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 27475196 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 30523167 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 35345566 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 7399065 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 9897419 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 28908043 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17457241 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 27968305 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 3031247 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13211475 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g087100 |
| SBS | Chr10 | 1658449 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 21863087 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g176400 |
| SBS | Chr11 | 114440 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8494117 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 9888103 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 29010197 | T-C | Hetero | INTERGENIC |
Deletions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 5883069 | 5883072 | 3 | |
| Deletion | Chr5 | 20534001 | 21027000 | 492999 | 57 |
| Deletion | Chr7 | 24854001 | 24872000 | 17999 | 5 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 22766864 | 22766872 | 7 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 4518417 | 4574843 | |
| Inversion | Chr7 | 5839183 | 5893722 | OsKitaake07g071100 |
| Inversion | Chr7 | 5839192 | 5893728 | OsKitaake07g071100 |
| Inversion | Chr8 | 18108664 | 18234077 | |
| Inversion | Chr8 | 18108668 | 18234080 |