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Mutant Information

Mutant Name	FN2653-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2653-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6243948 G-T Hetero SPLICE_SITE_REGION
SBS Chr1 21375655 C-T Hetero INTRON
SBS Chr1 23767130 T-C Hetero INTRON
SBS Chr1 26882449 C-G Homo INTRON
SBS Chr2 9194339 A-G Hetero INTERGENIC
SBS Chr2 17825428 C-G Hetero INTERGENIC
SBS Chr2 18188384 C-T Homo INTERGENIC
SBS Chr2 31671230 G-A Hetero INTERGENIC
SBS Chr3 9054086 C-T Hetero INTERGENIC
SBS Chr3 9141387 G-A Hetero INTRON
SBS Chr3 16460056 T-C Hetero INTERGENIC
SBS Chr3 17477559 C-T Hetero INTERGENIC
SBS Chr3 19099920 A-G Hetero INTERGENIC
SBS Chr3 30870323 A-G Hetero INTRON
SBS Chr4 3105458 A-C Hetero INTERGENIC
SBS Chr4 6943682 T-C Hetero INTERGENIC
SBS Chr4 9606577 T-C Hetero INTERGENIC
SBS Chr4 14596190 C-A Hetero INTERGENIC
SBS Chr4 14786872 G-A Homo INTERGENIC
SBS Chr4 15185689 A-C Homo SYNONYMOUS_CODING
SBS Chr5 6839666 G-A Hetero INTERGENIC
SBS Chr5 13757482 G-A Hetero INTERGENIC
SBS Chr5 14298630 G-A Hetero INTERGENIC
SBS Chr5 16857932 A-G Hetero INTERGENIC
SBS Chr5 21544598 G-T Hetero INTERGENIC
SBS Chr5 29273218 G-A Hetero INTERGENIC
SBS Chr6 7059338 G-T Hetero INTERGENIC
SBS Chr6 12941608 C-A Hetero INTERGENIC
SBS Chr6 16205824 A-T Hetero INTERGENIC
SBS Chr6 27911822 C-T Hetero INTERGENIC
SBS Chr7 12636424 C-A Hetero INTERGENIC
SBS Chr7 14578347 G-A Hetero INTERGENIC
SBS Chr7 16121615 G-A Hetero INTERGENIC
SBS Chr7 16121616 T-A Hetero INTERGENIC
SBS Chr7 18577567 G-T Hetero INTERGENIC
SBS Chr7 22075902 G-A Hetero INTERGENIC
SBS Chr8 4386183 G-A Hetero INTERGENIC
SBS Chr8 6897095 C-A Hetero INTERGENIC
SBS Chr8 7036822 G-A Hetero INTERGENIC
SBS Chr8 12039525 G-A Hetero INTERGENIC
SBS Chr8 25572367 T-A Hetero INTERGENIC
SBS Chr8 26470912 C-A Hetero INTRON
SBS Chr9 5246893 C-T Hetero INTERGENIC
SBS Chr9 7626364 T-A Hetero INTERGENIC
SBS Chr9 11884853 A-T Hetero INTERGENIC
SBS Chr10 1988028 T-A Hetero INTERGENIC
SBS Chr10 17385322 C-T Hetero INTERGENIC
SBS Chr10 19363434 G-A Homo INTERGENIC
SBS Chr10 21548801 A-G Hetero INTERGENIC
SBS Chr11 2192578 T-G Homo NON_SYNONYMOUS_CODING OsKitaake11g032000
SBS Chr12 4813367 T-G Hetero INTRON
SBS Chr12 9770950 C-T Hetero INTERGENIC
SBS Chr12 14780502 G-T Hetero INTERGENIC
SBS Chr12 16143656 C-A Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 917524 917525 1
Deletion Chr3 2897311 2897321 10
Deletion Chr3 5302174 5302175 1
Deletion Chr6 6391490 6391498 8
Deletion Chr10 6874093 6874094 1
Deletion Chr3 6938117 6938126 9
Deletion Chr9 8139424 8139430 6
Deletion Chr1 9470607 9470611 4
Deletion Chr9 9726485 9726486 1
Deletion Chr10 9744640 9744642 2
Deletion Chr2 10023242 10023254 12
Deletion Chr5 12083171 12083186 15
Deletion Chr1 12951035 12951046 11
Deletion Chr10 15448366 15448368 2 OsKitaake10g099500
Deletion Chr1 19082440 19082448 8
Deletion Chr10 19909462 19909463 1
Deletion Chr3 21725603 21725604 1
Deletion Chr11 22176363 22176376 13
Deletion Chr1 22928011 22928013 2
Deletion Chr7 22962539 22962542 3
Deletion Chr1 25019364 25019366 2
Deletion Chr4 26584349 26584365 16
Deletion Chr1 27641655 27641657 2
Deletion Chr8 27730310 27730329 19
Deletion Chr6 28262001 28266000 3999 OsKitaake06g258003

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 35778867 35778870 2
Insertion Chr1 36792049 36792052 2
Insertion Chr2 3527313 3527316 2
Insertion Chr2 7480780 7480783 2
Insertion Chr2 17642860 17642863 2 OsKitaake02g176900
Insertion Chr10 5110235 5110237 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 7656827 8334167
Inversion Chr8 7656830 8334169
Inversion Chr6 28261791 28634488 OsKitaake06g263300
Inversion Chr6 28265977 28634502 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 18127530 Chr6 28634546 OsKitaake06g263300
Translocation Chr7 18127605 Chr6 28266036 OsKitaake06g258003

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6243948	G-T	Hetero	SPLICE_SITE_REGION
SBS	Chr1	21375655	C-T	Hetero	INTRON
SBS	Chr1	23767130	T-C	Hetero	INTRON
SBS	Chr1	26882449	C-G	Homo	INTRON
SBS	Chr2	9194339	A-G	Hetero	INTERGENIC
SBS	Chr2	17825428	C-G	Hetero	INTERGENIC
SBS	Chr2	18188384	C-T	Homo	INTERGENIC
SBS	Chr2	31671230	G-A	Hetero	INTERGENIC
SBS	Chr3	9054086	C-T	Hetero	INTERGENIC
SBS	Chr3	9141387	G-A	Hetero	INTRON
SBS	Chr3	16460056	T-C	Hetero	INTERGENIC
SBS	Chr3	17477559	C-T	Hetero	INTERGENIC
SBS	Chr3	19099920	A-G	Hetero	INTERGENIC
SBS	Chr3	30870323	A-G	Hetero	INTRON
SBS	Chr4	3105458	A-C	Hetero	INTERGENIC
SBS	Chr4	6943682	T-C	Hetero	INTERGENIC
SBS	Chr4	9606577	T-C	Hetero	INTERGENIC
SBS	Chr4	14596190	C-A	Hetero	INTERGENIC
SBS	Chr4	14786872	G-A	Homo	INTERGENIC
SBS	Chr4	15185689	A-C	Homo	SYNONYMOUS_CODING
SBS	Chr5	6839666	G-A	Hetero	INTERGENIC
SBS	Chr5	13757482	G-A	Hetero	INTERGENIC
SBS	Chr5	14298630	G-A	Hetero	INTERGENIC
SBS	Chr5	16857932	A-G	Hetero	INTERGENIC
SBS	Chr5	21544598	G-T	Hetero	INTERGENIC
SBS	Chr5	29273218	G-A	Hetero	INTERGENIC
SBS	Chr6	7059338	G-T	Hetero	INTERGENIC
SBS	Chr6	12941608	C-A	Hetero	INTERGENIC
SBS	Chr6	16205824	A-T	Hetero	INTERGENIC
SBS	Chr6	27911822	C-T	Hetero	INTERGENIC
SBS	Chr7	12636424	C-A	Hetero	INTERGENIC
SBS	Chr7	14578347	G-A	Hetero	INTERGENIC
SBS	Chr7	16121615	G-A	Hetero	INTERGENIC
SBS	Chr7	16121616	T-A	Hetero	INTERGENIC
SBS	Chr7	18577567	G-T	Hetero	INTERGENIC
SBS	Chr7	22075902	G-A	Hetero	INTERGENIC
SBS	Chr8	4386183	G-A	Hetero	INTERGENIC
SBS	Chr8	6897095	C-A	Hetero	INTERGENIC
SBS	Chr8	7036822	G-A	Hetero	INTERGENIC
SBS	Chr8	12039525	G-A	Hetero	INTERGENIC
SBS	Chr8	25572367	T-A	Hetero	INTERGENIC
SBS	Chr8	26470912	C-A	Hetero	INTRON
SBS	Chr9	5246893	C-T	Hetero	INTERGENIC
SBS	Chr9	7626364	T-A	Hetero	INTERGENIC
SBS	Chr9	11884853	A-T	Hetero	INTERGENIC
SBS	Chr10	1988028	T-A	Hetero	INTERGENIC
SBS	Chr10	17385322	C-T	Hetero	INTERGENIC
SBS	Chr10	19363434	G-A	Homo	INTERGENIC
SBS	Chr10	21548801	A-G	Hetero	INTERGENIC
SBS	Chr11	2192578	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g032000
SBS	Chr12	4813367	T-G	Hetero	INTRON
SBS	Chr12	9770950	C-T	Hetero	INTERGENIC
SBS	Chr12	14780502	G-T	Hetero	INTERGENIC
SBS	Chr12	16143656	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	917524	917525	1
Deletion	Chr3	2897311	2897321	10
Deletion	Chr3	5302174	5302175	1
Deletion	Chr6	6391490	6391498	8
Deletion	Chr10	6874093	6874094	1
Deletion	Chr3	6938117	6938126	9
Deletion	Chr9	8139424	8139430	6
Deletion	Chr1	9470607	9470611	4
Deletion	Chr9	9726485	9726486	1
Deletion	Chr10	9744640	9744642	2
Deletion	Chr2	10023242	10023254	12
Deletion	Chr5	12083171	12083186	15
Deletion	Chr1	12951035	12951046	11
Deletion	Chr10	15448366	15448368	2	OsKitaake10g099500
Deletion	Chr1	19082440	19082448	8
Deletion	Chr10	19909462	19909463	1
Deletion	Chr3	21725603	21725604	1
Deletion	Chr11	22176363	22176376	13
Deletion	Chr1	22928011	22928013	2
Deletion	Chr7	22962539	22962542	3
Deletion	Chr1	25019364	25019366	2
Deletion	Chr4	26584349	26584365	16
Deletion	Chr1	27641655	27641657	2
Deletion	Chr8	27730310	27730329	19
Deletion	Chr6	28262001	28266000	3999	OsKitaake06g258003

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	7656827	8334167
Inversion	Chr8	7656830	8334169
Inversion	Chr6	28261791	28634488	OsKitaake06g263300
Inversion	Chr6	28265977	28634502	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes