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Mutant Information

Mutant Name	FN2654-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2654-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4065184 G-A Hetero UTR_5_PRIME
SBS Chr1 5762752 C-T Hetero UTR_5_PRIME
SBS Chr1 12040877 C-T Hetero INTERGENIC
SBS Chr1 13547828 T-A Hetero INTERGENIC
SBS Chr1 14495789 A-T Hetero INTRON
SBS Chr1 17404450 T-A Hetero INTERGENIC
SBS Chr1 22600334 C-T Hetero INTERGENIC
SBS Chr2 2612105 C-A Homo NON_SYNONYMOUS_CODING OsKitaake02g037400
SBS Chr2 5515686 A-G Homo SYNONYMOUS_CODING
SBS Chr2 6866076 A-T Homo INTERGENIC
SBS Chr2 13447026 C-T Hetero INTRON
SBS Chr3 28339241 C-T Hetero INTRON
SBS Chr4 2839058 C-T Homo INTERGENIC
SBS Chr4 6951861 C-A Hetero INTERGENIC
SBS Chr4 8970591 C-T Homo INTERGENIC
SBS Chr4 11940844 G-T Hetero INTERGENIC
SBS Chr4 16716304 C-A Hetero UTR_3_PRIME
SBS Chr4 17701099 G-A Hetero INTERGENIC
SBS Chr4 23503653 C-G Homo SYNONYMOUS_CODING
SBS Chr5 2709215 A-C Hetero INTERGENIC
SBS Chr5 6102866 C-T Hetero INTERGENIC
SBS Chr5 8913933 T-C Hetero INTERGENIC
SBS Chr5 19000136 A-G Hetero INTERGENIC
SBS Chr5 25034186 A-G Hetero UTR_5_PRIME
SBS Chr5 28088542 T-C Hetero INTRON
SBS Chr6 12204141 A-G Hetero INTERGENIC
SBS Chr6 18776249 C-T Hetero INTRON
SBS Chr6 20510128 A-G Hetero INTERGENIC
SBS Chr6 28100182 G-A Hetero UTR_3_PRIME
SBS Chr8 12107223 G-A Hetero INTERGENIC
SBS Chr8 13453169 C-T Hetero UTR_3_PRIME
SBS Chr8 17270010 A-T Hetero INTERGENIC
SBS Chr9 9334785 C-G Homo INTRON
SBS Chr9 9334792 A-G Homo INTRON
SBS Chr9 11842271 G-A Hetero INTERGENIC
SBS Chr9 14201660 C-T Hetero INTERGENIC
SBS Chr9 21692726 A-T Hetero INTRON
SBS Chr9 21692729 A-G Hetero INTRON
SBS Chr10 2399161 G-A Hetero INTERGENIC
SBS Chr10 3248946 C-T Hetero INTERGENIC
SBS Chr10 4010624 T-G Hetero INTERGENIC
SBS Chr10 9178311 C-T Hetero INTERGENIC
SBS Chr10 10227953 T-C Hetero INTERGENIC
SBS Chr10 10227954 A-G Hetero INTERGENIC
SBS Chr10 15787290 T-C Hetero INTERGENIC
SBS Chr10 15787298 G-A Hetero INTERGENIC
SBS Chr10 16859277 T-C Hetero INTRON
SBS Chr10 17411357 C-T Hetero INTERGENIC
SBS Chr10 18101532 G-A Hetero INTERGENIC
SBS Chr11 1559480 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g020600
SBS Chr11 19856778 C-G Hetero INTRON
SBS Chr11 20340088 G-A Hetero INTERGENIC
SBS Chr12 2017103 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g031800
SBS Chr12 9623750 G-A Hetero INTERGENIC
SBS Chr12 16454880 G-A Hetero INTERGENIC
SBS Chr12 19870969 C-T Hetero INTERGENIC
SBS Chr12 23402099 G-A Hetero INTERGENIC
SBS Chr12 26386755 C-T Hetero INTERGENIC

Deletions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 225341 225346 5
Deletion Chr1 2237555 2237557 2
Deletion Chr3 2856653 2856687 34
Deletion Chr1 3135097 3135099 2
Deletion Chr11 3963886 3963890 4
Deletion Chr2 5417413 5417424 11 OsKitaake02g074300
Deletion Chr3 5789999 5790009 10
Deletion Chr6 5911953 5911955 2
Deletion Chr3 9466480 9466504 24
Deletion Chr9 10965819 10965830 11
Deletion Chr8 11076190 11076191 1
Deletion Chr10 12397577 12397581 4
Deletion Chr7 12630316 12630317 1
Deletion Chr7 14688816 14688818 2
Deletion Chr5 14911001 14960000 48999 5
Deletion Chr10 15533567 15533570 3
Deletion Chr7 16847998 16848006 8
Deletion Chr1 16851823 16851825 2
Deletion Chr2 20238137 20238139 2 OsKitaake02g197400
Deletion Chr10 20712997 20712999 2
Deletion Chr5 23109312 23109315 3
Deletion Chr5 23878265 23878270 5
Deletion Chr3 24331001 24338000 6999 3
Deletion Chr6 24471617 24471618 1
Deletion Chr7 24482026 24482031 5
Deletion Chr8 25009579 25009580 1
Deletion Chr1 26975025 26975031 6
Deletion Chr3 28878639 28878645 6
Deletion Chr5 29379385 29379391 6
Deletion Chr2 35057627 35057630 3
Deletion Chr4 36693696 36693697 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 2131756 2131759 2
Insertion Chr11 6420656 6420659 2
Insertion Chr11 9626590 9626593 2
Insertion Chr11 11146371 11146374 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 39587 Chr3 24330984 2
Translocation Chr6 25185001 Chr3 25843886 OsKitaake03g272800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4065184	G-A	Hetero	UTR_5_PRIME
SBS	Chr1	5762752	C-T	Hetero	UTR_5_PRIME
SBS	Chr1	12040877	C-T	Hetero	INTERGENIC
SBS	Chr1	13547828	T-A	Hetero	INTERGENIC
SBS	Chr1	14495789	A-T	Hetero	INTRON
SBS	Chr1	17404450	T-A	Hetero	INTERGENIC
SBS	Chr1	22600334	C-T	Hetero	INTERGENIC
SBS	Chr2	2612105	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g037400
SBS	Chr2	5515686	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr2	6866076	A-T	Homo	INTERGENIC
SBS	Chr2	13447026	C-T	Hetero	INTRON
SBS	Chr3	28339241	C-T	Hetero	INTRON
SBS	Chr4	2839058	C-T	Homo	INTERGENIC
SBS	Chr4	6951861	C-A	Hetero	INTERGENIC
SBS	Chr4	8970591	C-T	Homo	INTERGENIC
SBS	Chr4	11940844	G-T	Hetero	INTERGENIC
SBS	Chr4	16716304	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	17701099	G-A	Hetero	INTERGENIC
SBS	Chr4	23503653	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr5	2709215	A-C	Hetero	INTERGENIC
SBS	Chr5	6102866	C-T	Hetero	INTERGENIC
SBS	Chr5	8913933	T-C	Hetero	INTERGENIC
SBS	Chr5	19000136	A-G	Hetero	INTERGENIC
SBS	Chr5	25034186	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	28088542	T-C	Hetero	INTRON
SBS	Chr6	12204141	A-G	Hetero	INTERGENIC
SBS	Chr6	18776249	C-T	Hetero	INTRON
SBS	Chr6	20510128	A-G	Hetero	INTERGENIC
SBS	Chr6	28100182	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	12107223	G-A	Hetero	INTERGENIC
SBS	Chr8	13453169	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	17270010	A-T	Hetero	INTERGENIC
SBS	Chr9	9334785	C-G	Homo	INTRON
SBS	Chr9	9334792	A-G	Homo	INTRON
SBS	Chr9	11842271	G-A	Hetero	INTERGENIC
SBS	Chr9	14201660	C-T	Hetero	INTERGENIC
SBS	Chr9	21692726	A-T	Hetero	INTRON
SBS	Chr9	21692729	A-G	Hetero	INTRON
SBS	Chr10	2399161	G-A	Hetero	INTERGENIC
SBS	Chr10	3248946	C-T	Hetero	INTERGENIC
SBS	Chr10	4010624	T-G	Hetero	INTERGENIC
SBS	Chr10	9178311	C-T	Hetero	INTERGENIC
SBS	Chr10	10227953	T-C	Hetero	INTERGENIC
SBS	Chr10	10227954	A-G	Hetero	INTERGENIC
SBS	Chr10	15787290	T-C	Hetero	INTERGENIC
SBS	Chr10	15787298	G-A	Hetero	INTERGENIC
SBS	Chr10	16859277	T-C	Hetero	INTRON
SBS	Chr10	17411357	C-T	Hetero	INTERGENIC
SBS	Chr10	18101532	G-A	Hetero	INTERGENIC
SBS	Chr11	1559480	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g020600
SBS	Chr11	19856778	C-G	Hetero	INTRON
SBS	Chr11	20340088	G-A	Hetero	INTERGENIC
SBS	Chr12	2017103	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g031800
SBS	Chr12	9623750	G-A	Hetero	INTERGENIC
SBS	Chr12	16454880	G-A	Hetero	INTERGENIC
SBS	Chr12	19870969	C-T	Hetero	INTERGENIC
SBS	Chr12	23402099	G-A	Hetero	INTERGENIC
SBS	Chr12	26386755	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	225341	225346	5
Deletion	Chr1	2237555	2237557	2
Deletion	Chr3	2856653	2856687	34
Deletion	Chr1	3135097	3135099	2
Deletion	Chr11	3963886	3963890	4
Deletion	Chr2	5417413	5417424	11	OsKitaake02g074300
Deletion	Chr3	5789999	5790009	10
Deletion	Chr6	5911953	5911955	2
Deletion	Chr3	9466480	9466504	24
Deletion	Chr9	10965819	10965830	11
Deletion	Chr8	11076190	11076191	1
Deletion	Chr10	12397577	12397581	4
Deletion	Chr7	12630316	12630317	1
Deletion	Chr7	14688816	14688818	2
Deletion	Chr5	14911001	14960000	48999	5
Deletion	Chr10	15533567	15533570	3
Deletion	Chr7	16847998	16848006	8
Deletion	Chr1	16851823	16851825	2
Deletion	Chr2	20238137	20238139	2	OsKitaake02g197400
Deletion	Chr10	20712997	20712999	2
Deletion	Chr5	23109312	23109315	3
Deletion	Chr5	23878265	23878270	5
Deletion	Chr3	24331001	24338000	6999	3
Deletion	Chr6	24471617	24471618	1
Deletion	Chr7	24482026	24482031	5
Deletion	Chr8	25009579	25009580	1
Deletion	Chr1	26975025	26975031	6
Deletion	Chr3	28878639	28878645	6
Deletion	Chr5	29379385	29379391	6
Deletion	Chr2	35057627	35057630	3
Deletion	Chr4	36693696	36693697	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	39587	Chr3	24330984	2
Translocation	Chr6	25185001	Chr3	25843886	OsKitaake03g272800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes